Wall clock time and date at job start Mon Mar 30 2020 06:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47303 * 2 1 4 4 C 1.52996 * 115.54795 * 65.35258 * 3 2 1 5 5 N 1.46897 * 109.47142 * 64.74265 * 4 3 2 6 6 C 1.46900 * 111.00350 * 176.79941 * 5 4 3 7 7 H 1.09003 * 109.46887 * 324.99916 * 6 5 4 8 8 C 1.50701 * 109.46801 * 84.99929 * 6 5 4 9 9 H 1.07995 * 120.00322 * 29.07968 * 8 6 5 10 10 C 1.37882 * 119.99883 * 209.08017 * 8 6 5 11 11 N 1.31512 * 119.99811 * 6.27306 * 10 8 6 12 12 Si 1.86796 * 120.00108 * 186.27145 * 10 8 6 13 13 H 1.48502 * 109.46952 * 89.99930 * 12 10 8 14 14 H 1.48500 * 109.47379 * 209.99943 * 12 10 8 15 15 H 1.48502 * 109.47356 * 330.00441 * 12 10 8 16 16 C 1.50693 * 109.47411 * 204.99882 * 6 5 4 17 17 C 1.38241 * 120.00196 * 313.30870 * 16 6 5 18 18 C 1.38237 * 119.99938 * 179.78529 * 17 16 6 19 19 C 1.38234 * 120.00025 * 0.44652 * 18 17 16 20 20 C 1.38237 * 119.99962 * 359.80892 * 19 18 17 21 21 C 1.38237 * 120.00215 * 359.97438 * 20 19 18 22 22 C 1.52996 * 117.49845 * 211.02726 * 3 2 1 23 23 C 1.53001 * 117.49757 * 279.68662 * 3 2 1 24 24 H 1.09009 * 109.46889 * 303.11417 * 1 2 3 25 25 H 1.09001 * 109.47130 * 63.11090 * 1 2 3 26 26 H 1.09001 * 109.47680 * 183.11603 * 1 2 3 27 27 H 1.09007 * 109.46844 * 240.00107 * 2 1 3 28 28 H 1.08998 * 109.47303 * 120.00246 * 2 1 3 29 29 H 1.09002 * 109.47659 * 304.74119 * 4 3 2 30 30 H 1.09001 * 109.47181 * 184.73803 * 4 3 2 31 31 H 1.00899 * 111.00313 * 52.84732 * 5 4 3 32 32 H 0.97003 * 119.99923 * 179.97438 * 11 10 8 33 33 H 1.08005 * 119.99523 * 359.97438 * 17 16 6 34 34 H 1.08000 * 119.99298 * 180.27416 * 18 17 16 35 35 H 1.08001 * 119.99646 * 179.83331 * 19 18 17 36 36 H 1.08000 * 119.99598 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.00030 * 179.97438 * 21 20 19 38 38 H 1.08998 * 117.49700 * 215.00207 * 22 3 2 39 39 H 1.09003 * 117.50030 * 0.02562 * 22 3 2 40 40 H 1.09004 * 117.50289 * 359.97120 * 23 3 2 41 41 H 1.09000 * 117.50141 * 144.99696 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7172 2.2565 1.2546 5 7 2.4093 1.6702 2.4101 6 6 2.1835 2.4708 3.6209 7 1 2.1315 3.5264 3.3540 8 6 0.8877 2.0513 4.2660 9 1 0.5314 1.0382 4.1529 10 6 0.1572 2.9611 5.0007 11 7 0.5245 4.2233 5.0370 12 14 -1.3544 2.4007 5.9444 13 1 -0.9576 1.9879 7.3145 14 1 -2.3290 3.5181 6.0268 15 1 -1.9782 1.2505 5.2421 16 6 3.3193 2.2523 4.5868 17 6 3.7599 0.9701 4.8571 18 6 4.8048 0.7700 5.7397 19 6 5.4030 1.8513 6.3592 20 6 4.9590 3.1331 6.0930 21 6 3.9170 3.3336 5.2069 22 6 3.3719 1.7208 -0.6995 23 6 2.0602 2.1846 -1.3378 24 1 -0.3633 0.5615 0.8608 25 1 -0.3633 0.4648 -0.9166 26 1 -0.3634 -1.0261 0.0559 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.6415 2.2427 1.4300 30 1 2.0496 3.2853 1.1157 31 1 3.3956 1.5644 2.2255 32 1 0.0104 4.8634 5.5536 33 1 3.2897 0.1250 4.3762 34 1 5.1518 -0.2314 5.9474 35 1 6.2176 1.6947 7.0509 36 1 5.4261 3.9778 6.5773 37 1 3.5699 4.3349 4.9993 38 1 4.0183 2.4839 -0.2659 39 1 3.8847 0.8764 -1.1601 40 1 1.7106 1.6451 -2.2181 41 1 1.8436 3.2528 -1.3242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233086180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:41 Heat of formation + Delta-G solvation = 35.055291 kcal Electronic energy + Delta-G solvation = -19479.273468 eV Core-core repulsion = 16745.002003 eV Total energy + Delta-G solvation = -2734.271465 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.62606 -38.05661 -34.82725 -32.16355 -31.46855 -30.19272 -29.96076 -26.66855 -24.75869 -23.40110 -22.44639 -21.91139 -21.45489 -19.84737 -18.30123 -16.54814 -15.89696 -15.34557 -14.77025 -14.63770 -14.19810 -14.05983 -13.66551 -13.26638 -13.09249 -12.60182 -12.32391 -12.23661 -11.96660 -11.76728 -11.68370 -11.32009 -11.16350 -10.95609 -10.92098 -10.71556 -10.34293 -10.19415 -10.09742 -9.77253 -9.61273 -9.47014 -9.30250 -8.51600 -8.02881 -7.68591 -7.24708 -6.05109 -4.07350 2.30662 2.32852 3.30202 3.36778 3.40126 4.06528 4.40043 4.72019 4.97207 5.08061 5.20598 5.27186 5.39216 5.65348 5.67154 5.76608 5.80656 5.85234 5.87181 5.94933 6.00154 6.11093 6.27093 6.28301 6.36254 6.39503 6.45980 6.53031 6.61577 6.62593 6.74433 6.87069 6.92471 7.00133 7.28195 7.33489 7.40382 7.73253 7.86337 7.92772 8.17742 8.22855 8.73042 9.04563 9.55869 11.00118 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.007990 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.319913 B = 3503.663931 C = 4818.671533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.108 4.108 4 C 0.110 3.890 5 N -0.678 5.678 6 C 0.236 3.764 7 H 0.038 0.962 8 C -0.485 4.485 9 H 0.064 0.936 10 C 0.062 3.938 11 N -0.889 5.889 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.272 1.272 16 C -0.036 4.036 17 C -0.108 4.108 18 C -0.135 4.135 19 C -0.152 4.152 20 C -0.132 4.132 21 C -0.112 4.112 22 C -0.181 4.181 23 C -0.180 4.180 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.015 0.985 31 H 0.314 0.686 32 H 0.261 0.739 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.335 -4.262 -6.859 9.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.109 4.109 4 C -0.020 4.020 5 N -0.307 5.307 6 C 0.129 3.871 7 H 0.056 0.944 8 C -0.523 4.523 9 H 0.082 0.918 10 C -0.140 4.140 11 N -0.527 5.527 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.214 1.214 15 H -0.197 1.197 16 C -0.038 4.038 17 C -0.126 4.126 18 C -0.153 4.153 19 C -0.170 4.170 20 C -0.150 4.150 21 C -0.130 4.130 22 C -0.218 4.218 23 C -0.218 4.218 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.033 0.967 31 H 0.130 0.870 32 H 0.071 0.929 33 H 0.138 0.862 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.135 0.865 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.741 -4.517 -6.638 9.324 hybrid contribution -0.265 0.688 0.603 0.953 sum 4.476 -3.829 -6.035 8.433 Atomic orbital electron populations 1.21704 0.95864 1.00927 1.01952 1.20894 0.95700 0.93242 1.01379 1.21657 0.99380 0.96790 0.93023 1.21278 1.00592 0.92719 0.87372 1.60681 1.13574 1.53454 1.03005 1.18385 0.91098 0.93242 0.84382 0.94416 1.21003 1.03576 0.97309 1.30432 0.91759 1.25003 0.97625 0.94755 0.96651 1.69911 1.40316 1.01714 1.40769 0.86581 0.82535 0.78315 0.80539 1.20686 1.21397 1.19726 1.20716 0.93028 0.92123 0.97917 1.20994 0.96131 0.97502 0.97963 1.20999 0.97964 0.97728 0.98652 1.20820 1.01242 0.93188 1.01763 1.20981 0.98301 0.96346 0.99382 1.21111 0.95202 0.99433 0.97284 1.22978 0.90935 1.03114 1.04800 1.22974 1.01785 1.00393 0.96600 0.91450 0.93702 0.93513 0.93505 0.90371 0.90130 0.96705 0.87005 0.92909 0.86192 0.87612 0.87808 0.87656 0.86469 0.89349 0.89371 0.89347 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.80 37.16 0.36 -1.73 16 2 C -0.07 -1.08 5.74 -26.73 -0.15 -1.23 16 3 C -0.11 -1.64 1.64 -154.51 -0.25 -1.89 16 4 C 0.11 2.06 5.17 -3.83 -0.02 2.04 16 5 N -0.68 -13.66 5.70 -109.19 -0.62 -14.28 16 6 C 0.24 5.59 2.28 -70.02 -0.16 5.43 16 7 H 0.04 1.01 6.80 -51.93 -0.35 0.66 16 8 C -0.48 -12.79 8.33 -34.44 -0.29 -13.07 16 9 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 10 C 0.06 1.68 5.45 -17.82 -0.10 1.58 16 11 N -0.89 -24.75 12.85 55.43 0.71 -24.04 16 12 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 C -0.04 -0.82 4.64 -104.62 -0.49 -1.30 16 17 C -0.11 -2.20 9.09 -39.58 -0.36 -2.56 16 18 C -0.14 -2.46 10.05 -39.58 -0.40 -2.86 16 19 C -0.15 -2.69 10.05 -39.58 -0.40 -3.09 16 20 C -0.13 -2.50 10.05 -39.58 -0.40 -2.90 16 21 C -0.11 -2.43 9.67 -39.58 -0.38 -2.81 16 22 C -0.18 -2.44 9.94 -26.70 -0.27 -2.71 16 23 C -0.18 -2.39 9.95 -26.69 -0.27 -2.65 16 24 H 0.07 1.11 6.87 -51.92 -0.36 0.76 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.60 8.09 -51.92 -0.42 0.18 16 28 H 0.08 1.23 8.04 -51.93 -0.42 0.82 16 29 H 0.08 1.69 6.83 -51.93 -0.35 1.33 16 30 H 0.01 0.29 7.93 -51.93 -0.41 -0.12 16 31 H 0.31 5.97 8.12 -39.29 -0.32 5.65 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.12 2.42 7.93 -52.48 -0.42 2.00 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.10 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.12 2.66 7.99 -52.49 -0.42 2.25 16 38 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 339.02 15.07 5.11 5.11 Total: -1.00 -26.96 339.02 -10.20 -37.16 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.82 Total: 9.54 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: -3.56 Total: -29.75 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.09 Total: -38.32 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -26.96 -10.20 -37.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233086180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.217 kcal (2) G-P(sol) polarization free energy of solvation -26.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds