Wall clock time and date at job start Mon Mar 30 2020 06:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47303 * 2 1 4 4 C 1.52996 * 115.54795 * 65.35258 * 3 2 1 5 5 N 1.46897 * 109.47142 * 64.74265 * 4 3 2 6 6 C 1.46900 * 111.00350 * 176.79941 * 5 4 3 7 7 H 1.09003 * 109.46887 * 324.99916 * 6 5 4 8 8 C 1.50701 * 109.46801 * 84.99929 * 6 5 4 9 9 H 1.07995 * 120.00322 * 29.07968 * 8 6 5 10 10 C 1.37882 * 119.99883 * 209.08017 * 8 6 5 11 11 N 1.31512 * 119.99811 * 6.27306 * 10 8 6 12 12 Si 1.86796 * 120.00108 * 186.27145 * 10 8 6 13 13 H 1.48502 * 109.46952 * 89.99930 * 12 10 8 14 14 H 1.48500 * 109.47379 * 209.99943 * 12 10 8 15 15 H 1.48502 * 109.47356 * 330.00441 * 12 10 8 16 16 C 1.50693 * 109.47411 * 204.99882 * 6 5 4 17 17 C 1.38241 * 120.00196 * 313.30870 * 16 6 5 18 18 C 1.38237 * 119.99938 * 179.78529 * 17 16 6 19 19 C 1.38234 * 120.00025 * 0.44652 * 18 17 16 20 20 C 1.38237 * 119.99962 * 359.80892 * 19 18 17 21 21 C 1.38237 * 120.00215 * 359.97438 * 20 19 18 22 22 C 1.52996 * 117.49845 * 211.02726 * 3 2 1 23 23 C 1.53001 * 117.49757 * 279.68662 * 3 2 1 24 24 H 1.09009 * 109.46889 * 303.11417 * 1 2 3 25 25 H 1.09001 * 109.47130 * 63.11090 * 1 2 3 26 26 H 1.09001 * 109.47680 * 183.11603 * 1 2 3 27 27 H 1.09007 * 109.46844 * 240.00107 * 2 1 3 28 28 H 1.08998 * 109.47303 * 120.00246 * 2 1 3 29 29 H 1.09002 * 109.47659 * 304.74119 * 4 3 2 30 30 H 1.09001 * 109.47181 * 184.73803 * 4 3 2 31 31 H 1.00899 * 111.00313 * 52.84732 * 5 4 3 32 32 H 0.97003 * 119.99923 * 179.97438 * 11 10 8 33 33 H 1.08005 * 119.99523 * 359.97438 * 17 16 6 34 34 H 1.08000 * 119.99298 * 180.27416 * 18 17 16 35 35 H 1.08001 * 119.99646 * 179.83331 * 19 18 17 36 36 H 1.08000 * 119.99598 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.00030 * 179.97438 * 21 20 19 38 38 H 1.08998 * 117.49700 * 215.00207 * 22 3 2 39 39 H 1.09003 * 117.50030 * 0.02562 * 22 3 2 40 40 H 1.09004 * 117.50289 * 359.97120 * 23 3 2 41 41 H 1.09000 * 117.50141 * 144.99696 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7172 2.2565 1.2546 5 7 2.4093 1.6702 2.4101 6 6 2.1835 2.4708 3.6209 7 1 2.1315 3.5264 3.3540 8 6 0.8877 2.0513 4.2660 9 1 0.5314 1.0382 4.1529 10 6 0.1572 2.9611 5.0007 11 7 0.5245 4.2233 5.0370 12 14 -1.3544 2.4007 5.9444 13 1 -0.9576 1.9879 7.3145 14 1 -2.3290 3.5181 6.0268 15 1 -1.9782 1.2505 5.2421 16 6 3.3193 2.2523 4.5868 17 6 3.7599 0.9701 4.8571 18 6 4.8048 0.7700 5.7397 19 6 5.4030 1.8513 6.3592 20 6 4.9590 3.1331 6.0930 21 6 3.9170 3.3336 5.2069 22 6 3.3719 1.7208 -0.6995 23 6 2.0602 2.1846 -1.3378 24 1 -0.3633 0.5615 0.8608 25 1 -0.3633 0.4648 -0.9166 26 1 -0.3634 -1.0261 0.0559 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.6415 2.2427 1.4300 30 1 2.0496 3.2853 1.1157 31 1 3.3956 1.5644 2.2255 32 1 0.0104 4.8634 5.5536 33 1 3.2897 0.1250 4.3762 34 1 5.1518 -0.2314 5.9474 35 1 6.2176 1.6947 7.0509 36 1 5.4261 3.9778 6.5773 37 1 3.5699 4.3349 4.9993 38 1 4.0183 2.4839 -0.2659 39 1 3.8847 0.8764 -1.1601 40 1 1.7106 1.6451 -2.2181 41 1 1.8436 3.2528 -1.3242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233086180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:40 Heat of formation + Delta-G solvation = 21.936714 kcal Electronic energy + Delta-G solvation = -19479.842332 eV Core-core repulsion = 16745.002003 eV Total energy + Delta-G solvation = -2734.840329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.14501 -39.38625 -36.51659 -34.13085 -32.61992 -31.78552 -31.50908 -28.48483 -26.48300 -24.60076 -24.07943 -23.16606 -22.91423 -21.57266 -19.58772 -18.48362 -17.49373 -16.76107 -16.60191 -15.98355 -15.77966 -15.62258 -15.09203 -14.80405 -14.49200 -14.21395 -13.91623 -13.81522 -13.44788 -13.29447 -12.96929 -12.89758 -12.85321 -12.62443 -12.30075 -12.10167 -11.92219 -11.83220 -11.56501 -11.43347 -11.34117 -10.87051 -10.62122 -10.46402 -9.58119 -9.31116 -9.02080 -8.09964 -6.19682 0.74012 0.77383 1.37492 1.38814 1.48205 2.40184 2.89536 3.08531 3.26599 3.63300 3.87590 4.03205 4.11844 4.24020 4.30450 4.32787 4.44205 4.58482 4.60557 4.75118 4.77838 4.80064 4.87788 4.91632 4.97410 5.04862 5.10570 5.19851 5.25628 5.30989 5.36040 5.41089 5.46580 5.55312 5.60039 5.72751 5.79890 5.83333 6.09592 6.18736 6.37013 6.47857 6.94905 7.02657 7.46551 8.92787 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.007990 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.319913 B = 3503.663931 C = 4818.671533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.069 4.069 3 C -0.125 4.125 4 C 0.117 3.883 5 N -0.669 5.669 6 C 0.246 3.754 7 H -0.005 1.005 8 C -0.491 4.491 9 H 0.052 0.948 10 C 0.015 3.985 11 N -0.918 5.918 12 Si 0.947 3.053 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.268 1.268 16 C -0.062 4.062 17 C -0.118 4.118 18 C -0.128 4.128 19 C -0.142 4.142 20 C -0.132 4.132 21 C -0.136 4.136 22 C -0.170 4.170 23 C -0.166 4.166 24 H 0.033 0.967 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.050 0.950 30 H -0.003 1.003 31 H 0.322 0.678 32 H 0.259 0.741 33 H 0.117 0.883 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.131 0.869 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.883 -6.216 -6.989 11.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.126 4.126 4 C -0.012 4.012 5 N -0.298 5.298 6 C 0.138 3.862 7 H 0.013 0.987 8 C -0.530 4.530 9 H 0.070 0.930 10 C -0.184 4.184 11 N -0.557 5.557 12 Si 0.774 3.226 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.192 1.192 16 C -0.063 4.063 17 C -0.136 4.136 18 C -0.146 4.146 19 C -0.159 4.159 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.207 4.207 23 C -0.204 4.204 24 H 0.052 0.948 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.015 0.985 31 H 0.139 0.861 32 H 0.068 0.932 33 H 0.136 0.864 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.149 0.851 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.296 -6.483 -6.780 11.297 hybrid contribution -0.660 1.295 0.630 1.585 sum 5.636 -5.188 -6.150 9.823 Atomic orbital electron populations 1.21667 0.96051 1.01333 1.01089 1.20849 0.95510 0.92484 1.01781 1.21483 1.01870 0.97105 0.92131 1.21139 0.98517 0.92671 0.88917 1.60585 1.14150 1.52488 1.02598 1.18081 0.91263 0.91016 0.85885 0.98692 1.21173 1.04920 0.96547 1.30360 0.92991 1.25669 1.00214 0.94862 0.97650 1.70042 1.41432 1.02490 1.41728 0.85714 0.79714 0.78002 0.79214 1.20526 1.21049 1.19200 1.20586 0.93734 0.93512 0.98451 1.21034 0.97271 0.96268 0.99053 1.21398 0.96382 0.99844 0.96931 1.21290 1.01399 0.92046 1.01206 1.21279 0.97082 0.98327 0.98276 1.21065 0.97120 0.98165 0.99185 1.23041 0.90399 1.03506 1.03714 1.23058 1.01226 1.00203 0.95907 0.94813 0.92324 0.92143 0.90734 0.92170 0.93149 0.98492 0.86115 0.93158 0.86448 0.83952 0.83631 0.85105 0.89070 0.90098 0.87090 0.86938 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 9.80 71.98 0.71 -3.34 16 2 C -0.07 -1.91 5.74 30.59 0.18 -1.73 16 3 C -0.13 -3.76 1.64 -52.18 -0.09 -3.84 16 4 C 0.12 4.66 5.17 86.30 0.45 5.11 16 5 N -0.67 -28.33 5.70 -499.37 -2.85 -31.18 16 6 C 0.25 12.34 2.28 43.42 0.10 12.44 16 7 H 0.00 -0.27 6.80 -2.39 -0.02 -0.29 16 8 C -0.49 -27.18 8.33 25.60 0.21 -26.96 16 9 H 0.05 2.93 7.82 -2.91 -0.02 2.91 16 10 C 0.02 0.86 5.45 84.66 0.46 1.32 16 11 N -0.92 -53.65 12.85 21.45 0.28 -53.38 16 12 Si 0.95 44.87 29.54 68.60 2.03 46.90 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 15 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 16 C -0.06 -2.84 4.64 -19.87 -0.09 -2.94 16 17 C -0.12 -4.75 9.09 22.27 0.20 -4.55 16 18 C -0.13 -4.25 10.05 22.27 0.22 -4.02 16 19 C -0.14 -4.49 10.05 22.27 0.22 -4.27 16 20 C -0.13 -4.79 10.05 22.27 0.22 -4.56 16 21 C -0.14 -6.12 9.67 22.27 0.22 -5.90 16 22 C -0.17 -4.28 9.94 30.62 0.30 -3.98 16 23 C -0.17 -4.15 9.95 30.62 0.30 -3.84 16 24 H 0.03 1.15 6.87 -2.38 -0.02 1.13 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.67 8.09 -2.38 -0.02 1.65 16 28 H 0.06 1.87 8.04 -2.39 -0.02 1.85 16 29 H 0.05 2.28 6.83 -2.39 -0.02 2.27 16 30 H 0.00 -0.13 7.93 -2.39 -0.02 -0.15 16 31 H 0.32 12.67 8.12 -89.69 -0.73 11.94 16 32 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 33 H 0.12 4.71 7.93 -2.91 -0.02 4.69 16 34 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 35 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 36 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 37 H 0.09 4.46 7.99 -2.91 -0.02 4.43 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 41 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -61.40 339.02 3.33 -58.07 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.26 Total: 30.64 kcal Atomic # 6 Polarization: -54.68 SS G_CDS: 3.62 Total: -51.05 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.57 Total: -84.55 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -61.40 3.33 -58.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233086180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.005 kcal (2) G-P(sol) polarization free energy of solvation -61.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds