Wall clock time and date at job start Mon Mar 30 2020 07:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46214 * 2 1 4 4 C 1.53038 * 109.46476 * 119.96969 * 2 1 3 5 5 C 1.53117 * 109.27833 * 179.19456 * 4 2 1 6 6 C 1.53120 * 109.15769 * 302.34140 * 5 4 2 7 7 C 1.53042 * 109.27893 * 57.66049 * 6 5 4 8 8 N 1.46844 * 109.52070 * 300.81668 * 7 6 5 9 9 C 1.46898 * 111.00001 * 185.83721 * 8 7 6 10 10 H 1.08997 * 109.47320 * 284.04160 * 9 8 7 11 11 C 1.50701 * 109.47189 * 164.04244 * 9 8 7 12 12 H 1.08010 * 120.00192 * 335.31272 * 11 9 8 13 13 C 1.37871 * 120.00191 * 155.30514 * 11 9 8 14 14 N 1.31512 * 120.00327 * 172.09117 * 13 11 9 15 15 Si 1.86797 * 120.00034 * 352.09922 * 13 11 9 16 16 H 1.48493 * 109.47576 * 89.90099 * 15 13 11 17 17 H 1.48505 * 109.47414 * 209.90696 * 15 13 11 18 18 H 1.48507 * 109.46741 * 329.89897 * 15 13 11 19 19 C 1.50698 * 109.46991 * 44.04945 * 9 8 7 20 20 C 1.38244 * 119.99729 * 229.49932 * 19 9 8 21 21 C 1.38229 * 119.99995 * 179.97438 * 20 19 9 22 22 C 1.38237 * 120.00001 * 359.97438 * 21 20 19 23 23 C 1.38229 * 120.00110 * 0.27977 * 22 21 20 24 24 C 1.38230 * 120.00702 * 49.47174 * 19 9 8 25 25 H 1.09002 * 109.47554 * 173.07050 * 1 2 3 26 26 H 1.09005 * 109.47254 * 293.06509 * 1 2 3 27 27 H 1.08999 * 109.47523 * 53.06104 * 1 2 3 28 28 H 1.08998 * 109.50129 * 299.13637 * 4 2 1 29 29 H 1.08996 * 109.50059 * 59.25371 * 4 2 1 30 30 H 1.09002 * 109.52678 * 62.24785 * 5 4 2 31 31 H 1.08997 * 109.52133 * 182.38073 * 5 4 2 32 32 H 1.09004 * 109.49955 * 177.59423 * 6 5 4 33 33 H 1.08995 * 109.50729 * 297.67638 * 6 5 4 34 34 H 1.08997 * 109.46439 * 180.80098 * 7 6 5 35 35 H 1.08995 * 109.46165 * 60.83046 * 7 6 5 36 36 H 0.96998 * 120.00455 * 180.02562 * 14 13 11 37 37 H 1.07999 * 119.99771 * 359.97438 * 20 19 9 38 38 H 1.08000 * 120.00072 * 180.02562 * 21 20 19 39 39 H 1.08006 * 120.00221 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00157 * 179.71873 * 23 22 21 41 41 H 1.08005 * 119.99736 * 0.02562 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5709 -0.7359 1.2356 6 6 4.0547 -1.4189 -0.0467 7 6 3.4864 -0.6778 -1.2592 8 7 2.0192 -0.6918 -1.1994 9 6 1.4372 -0.1107 -2.4166 10 1 1.5309 0.9747 -2.3817 11 6 -0.0195 -0.4865 -2.5057 12 1 -0.3795 -1.3749 -2.0079 13 6 -0.8927 0.3037 -3.2226 14 7 -2.1262 -0.1017 -3.4317 15 14 -0.3238 1.9502 -3.8969 16 1 0.2355 1.7606 -5.2594 17 1 -1.4766 2.8842 -3.9606 18 1 0.7221 2.5150 -3.0066 19 6 2.1671 -0.6395 -3.6243 20 6 2.6288 0.2348 -4.5905 21 6 3.2988 -0.2502 -5.6980 22 6 3.5075 -1.6093 -5.8392 23 6 3.0413 -2.4840 -4.8758 24 6 2.3754 -1.9987 -3.7658 25 1 -0.3634 -1.0201 -0.1240 26 1 -0.3634 0.4026 0.9455 27 1 -0.3634 0.6176 -0.8214 28 1 1.6895 -0.1980 2.1399 29 1 1.6659 -1.7446 1.2577 30 1 3.9457 0.2871 1.2670 31 1 3.9379 -1.2852 2.1025 32 1 5.1438 -1.3947 -0.0832 33 1 3.7129 -2.4538 -0.0590 34 1 3.8173 -1.1701 -2.1736 35 1 3.8402 0.3531 -1.2533 36 1 -2.7404 0.4541 -3.9364 37 1 2.4661 1.2967 -4.4799 38 1 3.6599 0.4329 -6.4526 39 1 4.0307 -1.9883 -6.7048 40 1 3.2004 -3.5463 -4.9884 41 1 2.0147 -2.6818 -3.0110 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252200029.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:19 Heat of formation + Delta-G solvation = 13.519157 kcal Electronic energy + Delta-G solvation = -20554.272288 eV Core-core repulsion = 17819.066946 eV Total energy + Delta-G solvation = -2735.205342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92216 -39.23572 -35.85278 -34.01122 -33.36285 -31.75215 -31.31878 -28.92065 -27.91304 -24.63482 -23.96849 -23.43989 -22.24025 -21.35627 -20.42819 -18.89806 -17.57089 -16.97016 -16.41765 -16.06769 -15.74908 -15.22507 -15.09852 -14.89306 -14.76411 -14.40890 -14.17744 -13.94021 -13.78787 -13.30043 -13.04139 -12.93219 -12.72341 -12.57026 -12.32791 -12.09680 -11.86299 -11.79209 -11.67631 -11.50526 -11.23815 -11.06640 -11.01911 -10.53620 -9.66682 -9.33286 -8.92462 -8.26108 -6.14832 0.61383 0.68034 1.26181 1.27556 1.33076 2.30385 2.94030 3.13600 3.27328 3.99697 4.03278 4.08653 4.14141 4.21362 4.29017 4.37033 4.40441 4.52839 4.64526 4.65339 4.73878 4.80482 4.86811 4.93228 5.00943 5.04827 5.12547 5.15678 5.22317 5.26761 5.31916 5.32603 5.43196 5.56555 5.60929 5.69660 5.74222 5.85104 5.97372 6.11626 6.28120 6.53945 6.73972 6.80573 7.36826 8.89270 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014763 B = 0.011392 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.127706 B = 2457.300778 C = 3724.310816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.092 3.908 3 H 0.015 0.985 4 C -0.105 4.105 5 C -0.114 4.114 6 C -0.108 4.108 7 C 0.048 3.952 8 N -0.524 5.524 9 C 0.214 3.786 10 H -0.002 1.002 11 C -0.453 4.453 12 H 0.052 0.948 13 C 0.025 3.975 14 N -0.938 5.938 15 Si 0.902 3.098 16 H -0.264 1.264 17 H -0.291 1.291 18 H -0.256 1.256 19 C -0.059 4.059 20 C -0.162 4.162 21 C -0.124 4.124 22 C -0.136 4.136 23 C -0.125 4.125 24 C -0.105 4.105 25 H 0.041 0.959 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.011 0.989 36 H 0.263 0.737 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.994 -1.089 3.072 14.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.017 4.017 3 H 0.033 0.967 4 C -0.142 4.142 5 C -0.152 4.152 6 C -0.146 4.146 7 C -0.080 4.080 8 N -0.249 5.249 9 C 0.107 3.893 10 H 0.015 0.985 11 C -0.492 4.492 12 H 0.070 0.930 13 C -0.173 4.173 14 N -0.579 5.579 15 Si 0.729 3.271 16 H -0.189 1.189 17 H -0.217 1.217 18 H -0.181 1.181 19 C -0.060 4.060 20 C -0.181 4.181 21 C -0.142 4.142 22 C -0.154 4.154 23 C -0.143 4.143 24 C -0.123 4.123 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.156 0.844 39 H 0.167 0.833 40 H 0.160 0.840 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.670 -1.518 3.039 14.086 hybrid contribution -0.466 1.874 -0.612 2.025 sum 13.204 0.356 2.427 13.430 Atomic orbital electron populations 1.22020 0.94686 1.01889 0.99928 1.21504 0.95398 0.93954 0.90804 0.96670 1.21613 0.96211 1.00761 0.95663 1.21565 0.94873 1.00684 0.98074 1.21546 1.00043 0.99614 0.93353 1.22226 0.87987 0.97835 0.99964 1.61941 1.06027 1.55296 1.01648 1.18702 0.93100 0.91797 0.85722 0.98496 1.20827 0.90430 1.09189 1.28732 0.92963 1.25410 0.94957 1.00458 0.96440 1.69998 1.06577 1.38845 1.42441 0.86412 0.78078 0.82353 0.80292 1.18880 1.21713 1.18069 1.20377 0.93898 0.94678 0.97082 1.21104 1.01654 0.98660 0.96692 1.21280 0.99053 0.96778 0.97119 1.21328 1.01380 0.92794 0.99931 1.21436 0.98265 1.00716 0.93839 1.20933 0.98509 0.94575 0.98297 0.93996 0.93465 0.92586 0.90628 0.91939 0.92473 0.89861 0.90117 0.91647 0.90998 0.97106 0.92806 0.88561 0.84405 0.83307 0.84021 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.46 7.68 71.98 0.55 -4.90 16 2 C 0.09 3.49 2.39 44.94 0.11 3.60 16 3 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 4 C -0.10 -3.08 5.37 30.65 0.16 -2.92 16 5 C -0.11 -2.82 6.00 30.67 0.18 -2.63 16 6 C -0.11 -2.87 6.09 30.65 0.19 -2.69 16 7 C 0.05 1.63 4.93 86.33 0.43 2.06 16 8 N -0.52 -21.29 4.14 -854.80 -3.54 -24.83 16 9 C 0.21 10.01 1.21 43.42 0.05 10.06 16 10 H 0.00 -0.12 5.04 -2.39 -0.01 -0.13 16 11 C -0.45 -24.70 5.31 25.60 0.14 -24.56 16 12 H 0.05 3.19 6.83 -2.91 -0.02 3.17 16 13 C 0.03 1.43 4.99 84.65 0.42 1.85 16 14 N -0.94 -57.41 13.96 21.44 0.30 -57.11 16 15 Si 0.90 44.37 25.03 68.60 1.72 46.09 16 16 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 18 H -0.26 -12.04 6.14 99.48 0.61 -11.43 16 19 C -0.06 -2.55 3.21 -19.87 -0.06 -2.61 16 20 C -0.16 -6.51 8.63 22.27 0.19 -6.32 16 21 C -0.12 -4.08 10.05 22.27 0.22 -3.86 16 22 C -0.14 -4.01 10.05 22.27 0.22 -3.79 16 23 C -0.12 -4.00 10.05 22.27 0.22 -3.77 16 24 C -0.10 -4.13 7.69 22.27 0.17 -3.96 16 25 H 0.04 1.93 6.92 -2.39 -0.02 1.92 16 26 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 27 H 0.06 2.78 5.32 -2.39 -0.01 2.76 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.76 8.14 -2.38 -0.02 1.75 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 2.53 5.39 -2.39 -0.01 2.52 16 35 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.10 3.92 6.57 -2.91 -0.02 3.90 16 38 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 39 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 41 H 0.11 4.61 8.00 -2.91 -0.02 4.58 16 Total: -1.00 -63.10 306.95 2.58 -60.53 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.89 Total: 19.76 kcal Atomic # 6 Polarization: -47.65 SS G_CDS: 3.20 Total: -44.44 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -3.24 Total: -81.94 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.72 Total: 46.09 kcal Total: -63.10 2.58 -60.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252200029.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.046 kcal (2) G-P(sol) polarization free energy of solvation -63.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds