Wall clock time and date at job start Mon Mar 30 2020 07:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 110.67594 * 2 1 4 4 C 1.54894 * 110.75622 * 236.76415 * 2 1 3 5 5 C 1.54259 * 104.19759 * 203.56277 * 4 2 1 6 6 C 1.53874 * 106.59969 * 23.60991 * 5 4 2 7 7 C 1.54260 * 106.63999 * 359.97438 * 6 5 4 8 8 H 1.08999 * 110.48539 * 95.09200 * 7 6 5 9 9 N 1.46898 * 110.49002 * 217.73552 * 7 6 5 10 10 C 1.46902 * 110.99909 * 273.54963 * 9 7 6 11 11 H 1.08997 * 109.47003 * 34.99953 * 10 9 7 12 12 C 1.50701 * 109.46975 * 274.99902 * 10 9 7 13 13 H 1.08001 * 119.99759 * 295.08226 * 12 10 9 14 14 C 1.37872 * 120.00308 * 115.08801 * 12 10 9 15 15 N 1.31510 * 120.00178 * 184.91424 * 14 12 10 16 16 Si 1.86803 * 119.99843 * 4.90904 * 14 12 10 17 17 H 1.48499 * 109.46792 * 84.72030 * 16 14 12 18 18 H 1.48496 * 109.47286 * 204.71704 * 16 14 12 19 19 H 1.48505 * 109.47191 * 324.72033 * 16 14 12 20 20 C 1.50698 * 109.46941 * 154.99957 * 10 9 7 21 21 C 1.38224 * 120.00243 * 44.78795 * 20 10 9 22 22 C 1.38243 * 120.00025 * 179.76860 * 21 20 10 23 23 C 1.38233 * 119.99802 * 0.48257 * 22 21 20 24 24 C 1.38237 * 119.99886 * 359.79335 * 23 22 21 25 25 C 1.38231 * 120.00116 * 359.95249 * 24 23 22 26 26 H 1.09002 * 109.47516 * 181.77657 * 1 2 3 27 27 H 1.08997 * 109.47093 * 301.78259 * 1 2 3 28 28 H 1.09002 * 109.47280 * 61.77890 * 1 2 3 29 29 H 1.08999 * 110.48369 * 84.88116 * 4 2 1 30 30 H 1.08996 * 110.48623 * 322.24483 * 4 2 1 31 31 H 1.09006 * 110.03198 * 264.32539 * 5 4 2 32 32 H 1.08997 * 110.03611 * 142.89759 * 5 4 2 33 33 H 1.08994 * 110.03415 * 119.28854 * 6 5 4 34 34 H 1.09006 * 110.02887 * 240.66727 * 6 5 4 35 35 H 1.00899 * 111.00209 * 149.59627 * 9 7 6 36 36 H 0.97006 * 120.00041 * 179.97438 * 15 14 12 37 37 H 1.08007 * 120.00287 * 359.97438 * 21 20 10 38 38 H 1.08000 * 120.00073 * 180.25837 * 22 21 20 39 39 H 1.08004 * 119.99767 * 179.77191 * 23 22 21 40 40 H 1.07999 * 119.99681 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.00002 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0197 0.0000 4 6 2.0789 -0.7939 -1.2115 5 6 3.4948 -1.2215 -0.7734 6 6 3.4974 -1.2225 0.7653 7 6 2.0834 -0.7949 1.2097 8 1 1.4643 -1.6701 1.4062 9 7 2.1559 0.0629 2.4000 10 6 2.1841 -0.7425 3.6283 11 1 2.7414 -1.6615 3.4474 12 6 0.7744 -1.0823 4.0385 13 1 0.0948 -0.2977 4.3367 14 6 0.3522 -2.3948 4.0333 15 7 -0.9035 -2.6828 4.2975 16 14 1.5640 -3.7641 3.6509 17 1 2.2881 -4.1446 4.8903 18 1 0.8293 -4.9427 3.1252 19 1 2.5378 -3.2935 2.6333 20 6 2.8521 0.0420 4.7280 21 6 2.5272 1.3710 4.9245 22 6 3.1364 2.0893 5.9364 23 6 4.0779 1.4810 6.7454 24 6 4.4070 0.1534 6.5453 25 6 3.7939 -0.5662 5.5368 26 1 -0.3634 -1.0272 0.0319 27 1 -0.3633 0.5413 0.8735 28 1 -0.3634 0.4860 -0.9055 29 1 2.1289 -0.1564 -2.0942 30 1 1.4592 -1.6691 -1.4065 31 1 4.2320 -0.5110 -1.1476 32 1 3.7156 -2.2211 -1.1478 33 1 3.7193 -2.2225 1.1377 34 1 4.2364 -0.5131 1.1379 35 1 1.3925 0.7224 2.4175 36 1 -1.2006 -3.6062 4.2934 37 1 1.7948 1.8475 4.2895 38 1 2.8795 3.1266 6.0926 39 1 4.5566 2.0432 7.5337 40 1 5.1429 -0.3217 7.1771 41 1 4.0513 -1.6033 5.3802 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252211714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:56 Heat of formation + Delta-G solvation = 3.750123 kcal Electronic energy + Delta-G solvation = -19900.355288 eV Core-core repulsion = 17164.726329 eV Total energy + Delta-G solvation = -2735.628959 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.80701 -38.00930 -34.68766 -32.09193 -30.91906 -30.34839 -30.11047 -27.26210 -25.79157 -24.12072 -22.62775 -21.77439 -20.23684 -19.43396 -19.05164 -17.16246 -16.19227 -15.54621 -14.89022 -14.48511 -14.32651 -14.10499 -13.44174 -13.24119 -13.18966 -12.80155 -12.67568 -12.42191 -12.08507 -11.96708 -11.64162 -11.31614 -11.04576 -10.99631 -10.76479 -10.61006 -10.37269 -10.29056 -10.10744 -10.08846 -9.82513 -9.70234 -9.34724 -8.74000 -8.20223 -7.89939 -7.28079 -6.24449 -4.26179 2.12948 2.20268 3.16913 3.23934 3.26423 4.25602 4.56359 4.97496 5.02012 5.06834 5.15355 5.40856 5.54715 5.58911 5.68746 5.72955 5.83838 5.94404 5.98111 6.00559 6.05732 6.10358 6.23833 6.26144 6.29512 6.37980 6.45097 6.48639 6.57066 6.65811 6.68888 6.75290 6.77559 6.88346 6.96498 7.16068 7.25933 7.44335 7.56781 7.78448 8.07847 8.29546 8.56759 8.80993 9.37787 10.87917 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.008553 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.295290 B = 3273.058608 C = 4044.733827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 H 0.077 0.923 4 C -0.118 4.118 5 C -0.121 4.121 6 C -0.120 4.120 7 C 0.094 3.906 8 H 0.054 0.946 9 N -0.678 5.678 10 C 0.200 3.800 11 H 0.054 0.946 12 C -0.531 4.531 13 H 0.077 0.923 14 C 0.081 3.919 15 N -0.888 5.888 16 Si 0.862 3.138 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.255 1.255 20 C -0.014 4.014 21 C -0.104 4.104 22 C -0.125 4.125 23 C -0.151 4.151 24 C -0.123 4.123 25 C -0.133 4.133 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.333 0.667 36 H 0.266 0.734 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.666 4.652 -5.480 10.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 H 0.095 0.905 4 C -0.156 4.156 5 C -0.159 4.159 6 C -0.158 4.158 7 C -0.017 4.017 8 H 0.072 0.928 9 N -0.308 5.308 10 C 0.092 3.908 11 H 0.072 0.928 12 C -0.570 4.570 13 H 0.095 0.905 14 C -0.123 4.123 15 N -0.525 5.525 16 Si 0.690 3.310 17 H -0.199 1.199 18 H -0.214 1.214 19 H -0.180 1.180 20 C -0.015 4.015 21 C -0.123 4.123 22 C -0.143 4.143 23 C -0.170 4.170 24 C -0.141 4.141 25 C -0.152 4.152 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.151 0.849 36 H 0.076 0.924 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.209 4.559 -5.491 10.878 hybrid contribution -0.474 -1.282 0.120 1.372 sum 7.736 3.277 -5.372 9.972 Atomic orbital electron populations 1.21731 0.95073 1.02044 1.01047 1.22214 0.95216 0.99368 0.94629 0.90452 1.22355 0.96255 0.99547 0.97455 1.22076 0.96963 1.00355 0.96483 1.22233 0.98588 1.00889 0.94090 1.22199 0.94394 0.95490 0.89572 0.92810 1.61122 1.49675 1.18370 1.01664 1.18722 0.95121 0.91526 0.85397 0.92814 1.21501 0.94878 0.94249 1.46377 0.90527 1.25084 0.94825 0.98469 0.93926 1.69893 1.15056 1.19420 1.48125 0.87127 0.82120 0.82069 0.79714 1.19891 1.21351 1.17963 1.20272 0.91668 0.93517 0.96027 1.20837 0.99668 0.94295 0.97479 1.21024 0.97685 0.99214 0.96421 1.20834 1.00166 0.95306 1.00657 1.20924 1.00277 0.94630 0.98256 1.20939 0.97933 0.99375 0.96935 0.92730 0.92171 0.93539 0.92281 0.91947 0.92323 0.92689 0.92919 0.91062 0.84868 0.92437 0.86721 0.87297 0.87456 0.87327 0.87389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.26 37.16 0.34 -1.88 16 2 C -0.10 -1.50 2.89 -88.58 -0.26 -1.76 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.12 -1.64 6.27 -25.07 -0.16 -1.80 16 5 C -0.12 -1.70 6.80 -25.62 -0.17 -1.88 16 6 C -0.12 -2.06 6.35 -25.62 -0.16 -2.22 16 7 C 0.09 1.77 2.41 -66.02 -0.16 1.61 16 8 H 0.05 1.19 6.32 -51.93 -0.33 0.86 16 9 N -0.68 -13.56 5.60 -100.40 -0.56 -14.12 16 10 C 0.20 4.51 2.02 -70.02 -0.14 4.37 16 11 H 0.05 1.26 3.91 -51.93 -0.20 1.06 16 12 C -0.53 -14.00 8.53 -34.44 -0.29 -14.29 16 13 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 14 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 15 N -0.89 -26.05 13.96 55.43 0.77 -25.28 16 16 Si 0.86 20.63 26.25 -169.99 -4.46 16.17 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.25 -5.76 5.33 56.52 0.30 -5.45 16 20 C -0.01 -0.29 4.93 -104.63 -0.52 -0.81 16 21 C -0.10 -2.04 9.28 -39.58 -0.37 -2.41 16 22 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 23 C -0.15 -2.49 10.05 -39.58 -0.40 -2.89 16 24 C -0.12 -2.13 10.05 -39.58 -0.40 -2.53 16 25 C -0.13 -2.66 9.67 -39.58 -0.38 -3.05 16 26 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 27 H 0.06 1.01 7.94 -51.93 -0.41 0.60 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.96 7.34 -51.93 -0.38 0.57 16 34 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 35 H 0.33 6.64 7.41 -39.29 -0.29 6.35 16 36 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.11 2.16 7.42 -52.48 -0.39 1.78 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.11 2.10 8.00 -52.49 -0.42 1.68 16 LS Contribution 323.18 15.07 4.87 4.87 Total: -1.00 -28.01 323.18 -9.66 -37.67 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.72 Total: 10.64 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -3.56 Total: -29.94 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.21 Total: -39.40 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.46 Total: 16.17 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.01 -9.66 -37.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252211714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.418 kcal (2) G-P(sol) polarization free energy of solvation -28.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds