Wall clock time and date at job start Mon Mar 30 2020 07:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 110.67594 * 2 1 4 4 C 1.54894 * 110.75622 * 236.76415 * 2 1 3 5 5 C 1.54259 * 104.19759 * 203.56277 * 4 2 1 6 6 C 1.53874 * 106.59969 * 23.60991 * 5 4 2 7 7 C 1.54260 * 106.63999 * 359.97438 * 6 5 4 8 8 H 1.08999 * 110.48539 * 95.09200 * 7 6 5 9 9 N 1.46898 * 110.49002 * 217.73552 * 7 6 5 10 10 C 1.46902 * 110.99909 * 273.54963 * 9 7 6 11 11 H 1.08997 * 109.47003 * 34.99953 * 10 9 7 12 12 C 1.50701 * 109.46975 * 274.99902 * 10 9 7 13 13 H 1.08001 * 119.99759 * 295.08226 * 12 10 9 14 14 C 1.37872 * 120.00308 * 115.08801 * 12 10 9 15 15 N 1.31510 * 120.00178 * 184.91424 * 14 12 10 16 16 Si 1.86803 * 119.99843 * 4.90904 * 14 12 10 17 17 H 1.48499 * 109.46792 * 84.72030 * 16 14 12 18 18 H 1.48496 * 109.47286 * 204.71704 * 16 14 12 19 19 H 1.48505 * 109.47191 * 324.72033 * 16 14 12 20 20 C 1.50698 * 109.46941 * 154.99957 * 10 9 7 21 21 C 1.38224 * 120.00243 * 44.78795 * 20 10 9 22 22 C 1.38243 * 120.00025 * 179.76860 * 21 20 10 23 23 C 1.38233 * 119.99802 * 0.48257 * 22 21 20 24 24 C 1.38237 * 119.99886 * 359.79335 * 23 22 21 25 25 C 1.38231 * 120.00116 * 359.95249 * 24 23 22 26 26 H 1.09002 * 109.47516 * 181.77657 * 1 2 3 27 27 H 1.08997 * 109.47093 * 301.78259 * 1 2 3 28 28 H 1.09002 * 109.47280 * 61.77890 * 1 2 3 29 29 H 1.08999 * 110.48369 * 84.88116 * 4 2 1 30 30 H 1.08996 * 110.48623 * 322.24483 * 4 2 1 31 31 H 1.09006 * 110.03198 * 264.32539 * 5 4 2 32 32 H 1.08997 * 110.03611 * 142.89759 * 5 4 2 33 33 H 1.08994 * 110.03415 * 119.28854 * 6 5 4 34 34 H 1.09006 * 110.02887 * 240.66727 * 6 5 4 35 35 H 1.00899 * 111.00209 * 149.59627 * 9 7 6 36 36 H 0.97006 * 120.00041 * 179.97438 * 15 14 12 37 37 H 1.08007 * 120.00287 * 359.97438 * 21 20 10 38 38 H 1.08000 * 120.00073 * 180.25837 * 22 21 20 39 39 H 1.08004 * 119.99767 * 179.77191 * 23 22 21 40 40 H 1.07999 * 119.99681 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.00002 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0197 0.0000 4 6 2.0789 -0.7939 -1.2115 5 6 3.4948 -1.2215 -0.7734 6 6 3.4974 -1.2225 0.7653 7 6 2.0834 -0.7949 1.2097 8 1 1.4643 -1.6701 1.4062 9 7 2.1559 0.0629 2.4000 10 6 2.1841 -0.7425 3.6283 11 1 2.7414 -1.6615 3.4474 12 6 0.7744 -1.0823 4.0385 13 1 0.0948 -0.2977 4.3367 14 6 0.3522 -2.3948 4.0333 15 7 -0.9035 -2.6828 4.2975 16 14 1.5640 -3.7641 3.6509 17 1 2.2881 -4.1446 4.8903 18 1 0.8293 -4.9427 3.1252 19 1 2.5378 -3.2935 2.6333 20 6 2.8521 0.0420 4.7280 21 6 2.5272 1.3710 4.9245 22 6 3.1364 2.0893 5.9364 23 6 4.0779 1.4810 6.7454 24 6 4.4070 0.1534 6.5453 25 6 3.7939 -0.5662 5.5368 26 1 -0.3634 -1.0272 0.0319 27 1 -0.3633 0.5413 0.8735 28 1 -0.3634 0.4860 -0.9055 29 1 2.1289 -0.1564 -2.0942 30 1 1.4592 -1.6691 -1.4065 31 1 4.2320 -0.5110 -1.1476 32 1 3.7156 -2.2211 -1.1478 33 1 3.7193 -2.2225 1.1377 34 1 4.2364 -0.5131 1.1379 35 1 1.3925 0.7224 2.4175 36 1 -1.2006 -3.6062 4.2934 37 1 1.7948 1.8475 4.2895 38 1 2.8795 3.1266 6.0926 39 1 4.5566 2.0432 7.5337 40 1 5.1429 -0.3217 7.1771 41 1 4.0513 -1.6033 5.3802 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252211714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:56 Heat of formation + Delta-G solvation = -11.672069 kcal Electronic energy + Delta-G solvation = -19901.024044 eV Core-core repulsion = 17164.726329 eV Total energy + Delta-G solvation = -2736.297715 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.29314 -39.36857 -36.33726 -34.10693 -32.21444 -31.79487 -31.53463 -28.91349 -27.35642 -25.56485 -24.25291 -23.20906 -21.66156 -20.84085 -20.51454 -19.18076 -17.64122 -16.96436 -16.68562 -16.04974 -15.73739 -15.51892 -14.89196 -14.73260 -14.64731 -14.53566 -14.07160 -13.87878 -13.72437 -13.61081 -13.06068 -12.93307 -12.82866 -12.37390 -12.09510 -12.03797 -11.85661 -11.78761 -11.65052 -11.49091 -11.26679 -11.20452 -11.12961 -10.80530 -9.63524 -9.41393 -8.98346 -8.39195 -6.42795 0.68639 0.75520 1.22812 1.24425 1.31933 2.22130 2.93031 3.18080 3.58634 3.72068 3.81701 4.08802 4.17036 4.29415 4.39803 4.41920 4.52740 4.56557 4.64610 4.65768 4.71406 4.77085 4.82875 4.91958 4.93574 5.00910 5.10821 5.16829 5.25888 5.29663 5.31275 5.35723 5.41223 5.42111 5.51531 5.60207 5.75550 5.81229 5.98999 6.11044 6.33568 6.49321 6.64828 6.82554 7.24626 8.76910 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.008553 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.295290 B = 3273.058608 C = 4044.733827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.087 0.913 4 C -0.113 4.113 5 C -0.115 4.115 6 C -0.118 4.118 7 C 0.084 3.916 8 H 0.016 0.984 9 N -0.666 5.666 10 C 0.210 3.790 11 H 0.044 0.956 12 C -0.522 4.522 13 H 0.036 0.964 14 C 0.029 3.971 15 N -0.938 5.938 16 Si 0.917 3.083 17 H -0.268 1.268 18 H -0.288 1.288 19 H -0.239 1.239 20 C -0.048 4.048 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.143 4.143 24 C -0.121 4.121 25 C -0.155 4.155 26 H 0.034 0.966 27 H 0.039 0.961 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.037 0.963 34 H 0.068 0.932 35 H 0.330 0.670 36 H 0.265 0.735 37 H 0.109 0.891 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.141 0.859 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.242 5.824 -6.075 13.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.106 0.894 4 C -0.151 4.151 5 C -0.152 4.152 6 C -0.156 4.156 7 C -0.027 4.027 8 H 0.034 0.966 9 N -0.295 5.295 10 C 0.102 3.898 11 H 0.062 0.938 12 C -0.561 4.561 13 H 0.054 0.946 14 C -0.170 4.170 15 N -0.577 5.577 16 Si 0.742 3.258 17 H -0.193 1.193 18 H -0.214 1.214 19 H -0.163 1.163 20 C -0.049 4.049 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.161 4.161 24 C -0.139 4.139 25 C -0.174 4.174 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.147 0.853 36 H 0.074 0.926 37 H 0.127 0.873 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.158 0.842 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.810 5.746 -6.097 13.676 hybrid contribution -1.275 -1.503 0.382 2.007 sum 9.535 4.243 -5.714 11.898 Atomic orbital electron populations 1.21696 0.95419 1.00827 1.01600 1.22195 0.94883 0.99708 0.94093 0.89432 1.22352 0.95765 0.99599 0.97342 1.22063 0.97671 1.01814 0.93692 1.22206 0.96974 0.99745 0.96724 1.22347 0.95429 0.94542 0.90365 0.96554 1.61151 1.49123 1.17911 1.01335 1.18515 0.92545 0.91928 0.86839 0.93800 1.21659 0.96507 0.93060 1.44911 0.94605 1.25791 0.96176 1.00852 0.94184 1.70031 1.17043 1.19811 1.50823 0.86235 0.80359 0.79108 0.80065 1.19279 1.21436 1.16313 1.20250 0.93547 0.94568 0.96496 1.20932 1.00270 0.94030 0.98752 1.21394 0.97028 1.00554 0.95237 1.21324 0.99009 0.95081 1.00644 1.21301 1.00107 0.95095 0.97407 1.21108 0.98566 0.99693 0.98008 0.94637 0.94206 0.90529 0.89373 0.92253 0.90207 0.91515 0.94429 0.91293 0.85254 0.92556 0.87309 0.84228 0.83499 0.84162 0.87715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 9.26 71.98 0.67 -3.68 16 2 C -0.09 -2.74 2.89 -9.48 -0.03 -2.77 16 3 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 4 C -0.11 -2.83 6.27 31.67 0.20 -2.63 16 5 C -0.11 -2.92 6.80 31.32 0.21 -2.70 16 6 C -0.12 -3.95 6.35 31.32 0.20 -3.75 16 7 C 0.08 3.18 2.41 46.01 0.11 3.29 16 8 H 0.02 0.75 6.32 -2.39 -0.02 0.73 16 9 N -0.67 -27.35 5.60 -471.56 -2.64 -29.99 16 10 C 0.21 9.79 2.02 43.42 0.09 9.88 16 11 H 0.04 2.11 3.91 -2.39 -0.01 2.10 16 12 C -0.52 -29.02 8.53 25.60 0.22 -28.80 16 13 H 0.04 2.23 8.06 -2.91 -0.02 2.21 16 14 C 0.03 1.69 5.47 84.65 0.46 2.15 16 15 N -0.94 -57.82 13.96 21.44 0.30 -57.52 16 16 Si 0.92 44.07 26.25 68.60 1.80 45.87 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 19 H -0.24 -10.75 5.33 99.48 0.53 -10.22 16 20 C -0.05 -2.05 4.93 -19.87 -0.10 -2.15 16 21 C -0.12 -4.73 9.28 22.27 0.21 -4.52 16 22 C -0.12 -3.97 10.05 22.27 0.22 -3.74 16 23 C -0.14 -4.17 10.05 22.27 0.22 -3.94 16 24 C -0.12 -3.88 10.05 22.27 0.22 -3.65 16 25 C -0.16 -6.10 9.67 22.27 0.22 -5.89 16 26 H 0.03 1.22 8.13 -2.39 -0.02 1.20 16 27 H 0.04 1.38 7.94 -2.39 -0.02 1.36 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 1.53 8.05 -2.39 -0.02 1.51 16 31 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.04 1.34 7.34 -2.39 -0.02 1.32 16 34 H 0.07 2.32 8.04 -2.38 -0.02 2.30 16 35 H 0.33 13.75 7.41 -89.69 -0.66 13.09 16 36 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 37 H 0.11 4.22 7.42 -2.91 -0.02 4.20 16 38 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 39 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 40 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 41 H 0.10 4.06 8.00 -2.91 -0.02 4.04 16 Total: -1.00 -64.04 323.18 2.74 -61.30 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.15 Total: 33.25 kcal Atomic # 6 Polarization: -56.03 SS G_CDS: 3.12 Total: -52.91 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -2.34 Total: -87.51 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.80 Total: 45.87 kcal Total: -64.04 2.74 -61.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252211714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.628 kcal (2) G-P(sol) polarization free energy of solvation -64.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds