Wall clock time and date at job start Mon Mar 30 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38253 * 120.00275 * 2 1 4 4 C 1.38208 * 120.00483 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99639 * 359.74319 * 4 3 2 6 6 C 1.50698 * 119.99957 * 180.27741 * 5 4 3 7 7 C 1.38212 * 119.99916 * 0.50952 * 5 4 3 8 8 C 1.50707 * 120.00009 * 179.76405 * 7 5 4 9 9 N 1.46904 * 109.46900 * 91.26257 * 8 7 5 10 10 C 1.47443 * 111.00258 * 74.04487 * 9 8 7 11 11 C 1.54310 * 107.36938 * 236.66223 * 10 9 8 12 12 C 1.55401 * 102.90113 * 337.89456 * 11 10 9 13 13 H 1.09004 * 110.90344 * 277.37812 * 12 11 10 14 14 C 1.50699 * 111.02798 * 153.64100 * 12 11 10 15 15 H 1.08002 * 119.99761 * 247.60854 * 14 12 11 16 16 C 1.37875 * 120.00181 * 67.59764 * 14 12 11 17 17 N 1.31515 * 120.00228 * 0.02562 * 16 14 12 18 18 Si 1.86808 * 119.99926 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47158 * 60.00319 * 18 16 14 20 20 H 1.48502 * 109.46876 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46861 * 300.00156 * 18 16 14 22 22 C 1.47848 * 110.99636 * 313.20071 * 9 8 7 23 23 C 1.38215 * 119.99862 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.47765 * 270.02204 * 1 2 3 25 25 H 1.09000 * 109.47358 * 30.02425 * 1 2 3 26 26 H 1.09001 * 109.47058 * 150.02009 * 1 2 3 27 27 H 1.08005 * 119.99560 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.00391 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.47178 * 265.58993 * 6 5 4 30 30 H 1.08997 * 109.47238 * 25.58912 * 6 5 4 31 31 H 1.09005 * 109.47270 * 145.58724 * 6 5 4 32 32 H 1.08998 * 109.47049 * 331.26142 * 8 7 5 33 33 H 1.08994 * 109.47274 * 211.26305 * 8 7 5 34 34 H 1.09006 * 109.88282 * 356.14415 * 10 9 8 35 35 H 1.08993 * 109.88829 * 117.16962 * 10 9 8 36 36 H 1.08997 * 110.71067 * 96.17920 * 11 10 9 37 37 H 1.08997 * 110.70474 * 219.41426 * 11 10 9 38 38 H 0.96993 * 119.99930 * 179.97438 * 17 16 14 39 39 H 1.09001 * 110.37185 * 265.18869 * 22 9 8 40 40 H 1.08999 * 110.37804 * 27.53681 * 22 9 8 41 41 H 1.08002 * 120.00040 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0000 0.0064 6 6 5.7786 0.0000 0.0133 7 6 3.5806 -1.1970 0.0012 8 6 4.3341 -2.5021 0.0022 9 7 4.5462 -2.9439 1.3871 10 6 3.2954 -3.4570 1.9756 11 6 3.0193 -2.6400 3.2551 12 6 4.4246 -2.0896 3.6255 13 1 5.0009 -2.8334 4.1758 14 6 4.3138 -0.8079 4.4104 15 1 4.6462 0.1226 3.9745 16 6 3.7878 -0.8232 5.6847 17 7 3.3833 -1.9564 6.2156 18 14 3.6498 0.7657 6.6574 19 1 2.7829 1.7219 5.9230 20 1 3.0568 0.4811 7.9888 21 1 5.0006 1.3569 6.8337 22 6 5.0409 -1.8328 2.2277 23 6 2.1980 -1.1970 0.0005 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6583 2.1326 -0.0004 28 1 4.1204 2.1326 0.0010 29 1 6.1466 -0.0814 -1.0094 30 1 6.1399 0.9278 0.4567 31 1 6.1393 -0.8465 0.5977 32 1 5.2983 -2.3654 -0.4873 33 1 3.7575 -3.2550 -0.5350 34 1 2.4743 -3.3299 1.2700 35 1 3.4089 -4.5116 2.2262 36 1 2.3280 -1.8228 3.0491 37 1 2.6333 -3.2823 4.0467 38 1 3.0136 -1.9672 7.1123 39 1 6.1293 -1.8545 2.2832 40 1 4.6992 -0.8763 1.8322 41 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260058097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:42 Heat of formation + Delta-G solvation = 21.388776 kcal Electronic energy + Delta-G solvation = -20269.975886 eV Core-core repulsion = 17535.111796 eV Total energy + Delta-G solvation = -2734.864090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.03771 -37.48957 -34.01006 -33.06359 -31.51729 -29.42128 -29.25643 -27.93602 -25.60315 -24.47921 -23.87448 -21.72438 -20.48346 -19.59017 -19.01896 -16.51766 -15.77078 -15.48832 -14.96180 -14.73335 -14.54295 -14.07849 -13.46126 -13.26574 -13.07201 -12.73450 -12.54637 -12.39899 -12.20246 -12.01596 -11.68628 -11.44335 -11.17582 -11.01151 -10.91233 -10.74778 -10.67375 -10.57955 -10.31723 -10.10992 -9.54835 -9.13001 -8.81095 -8.46946 -8.34486 -8.00333 -7.55716 -5.98106 -4.00127 1.65287 1.72341 3.33167 3.37530 3.40342 4.01406 4.45480 4.84851 5.00100 5.08690 5.20695 5.26641 5.35451 5.42212 5.51282 5.66066 5.75202 5.79575 5.86567 5.88947 5.96813 6.00227 6.05561 6.19665 6.21668 6.33491 6.43146 6.51936 6.57387 6.65555 6.74608 6.87750 6.91014 7.00617 7.20224 7.23487 7.35533 7.65845 7.72891 7.79158 7.92261 8.06968 8.48866 9.01817 9.63338 11.12046 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016722 B = 0.007924 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.069267 B = 3532.707426 C = 3924.234960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.073 4.073 6 C -0.127 4.127 7 C -0.103 4.103 8 C 0.085 3.915 9 N -0.522 5.522 10 C 0.035 3.965 11 C -0.116 4.116 12 C 0.051 3.949 13 H 0.036 0.964 14 C -0.508 4.508 15 H 0.053 0.947 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.887 3.113 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.026 3.974 23 C -0.104 4.104 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.260 0.740 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 2.542 -13.566 13.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.136 4.136 5 C -0.073 4.073 6 C -0.184 4.184 7 C -0.105 4.105 8 C -0.043 4.043 9 N -0.244 5.244 10 C -0.093 4.093 11 C -0.155 4.155 12 C 0.032 3.968 13 H 0.054 0.946 14 C -0.546 4.546 15 H 0.071 0.929 16 C -0.137 4.137 17 N -0.528 5.528 18 Si 0.715 3.285 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.100 4.100 23 C -0.122 4.122 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.616 2.025 -13.409 13.657 hybrid contribution -0.864 1.579 0.744 1.948 sum -2.479 3.604 -12.665 13.399 Atomic orbital electron populations 1.20746 0.91665 1.02028 1.02313 1.19799 0.95729 0.93267 1.00604 1.20887 0.94175 0.97171 1.01582 1.20935 0.94141 0.97299 1.01240 1.19675 0.95928 0.92575 0.99167 1.21127 0.91468 1.03893 1.01868 1.20431 0.94038 0.96241 0.99804 1.21397 0.98799 0.91353 0.92758 1.63998 1.27450 1.32238 1.00759 1.22946 0.89897 0.99298 0.97142 1.22704 1.00804 0.97884 0.94070 1.19752 0.91109 0.96248 0.89730 0.94580 1.20971 1.41173 0.93323 0.99177 0.92869 1.24943 0.95407 0.95873 0.97503 1.69952 1.42036 1.25072 1.15710 0.86739 0.78364 0.84166 0.79229 1.20370 1.21337 1.20258 1.23640 0.98393 0.92594 0.95420 1.20859 0.93505 0.97188 1.00683 0.91192 0.92020 0.91945 0.86689 0.86523 0.91888 0.91779 0.89731 0.90423 0.91100 0.94302 0.92054 0.93469 0.91547 0.93077 0.92434 0.91758 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 36.01 0.36 -1.01 16 2 C -0.09 -1.44 5.88 -104.63 -0.62 -2.06 16 3 C -0.12 -1.81 9.70 -39.59 -0.38 -2.20 16 4 C -0.12 -1.83 9.68 -39.59 -0.38 -2.21 16 5 C -0.07 -1.17 4.38 -104.63 -0.46 -1.63 16 6 C -0.13 -1.81 8.41 36.00 0.30 -1.50 16 7 C -0.10 -1.71 4.09 -104.62 -0.43 -2.14 16 8 C 0.09 1.37 5.17 -4.97 -0.03 1.34 16 9 N -0.52 -10.02 5.41 -232.69 -1.26 -11.28 16 10 C 0.03 0.69 6.40 -2.84 -0.02 0.67 16 11 C -0.12 -2.76 5.91 -24.77 -0.15 -2.90 16 12 C 0.05 1.30 2.84 -89.49 -0.25 1.04 16 13 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 14 C -0.51 -14.16 8.50 -34.44 -0.29 -14.45 16 15 H 0.05 1.48 7.77 -52.49 -0.41 1.07 16 16 C 0.06 1.81 5.37 -17.82 -0.10 1.72 16 17 N -0.89 -25.93 12.61 55.43 0.70 -25.24 16 18 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.03 0.56 4.25 -2.30 -0.01 0.55 16 23 C -0.10 -1.68 8.48 -39.58 -0.34 -2.02 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 26 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 27 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 28 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 31 H 0.08 1.31 4.30 -51.93 -0.22 1.08 16 32 H 0.08 1.14 6.72 -51.93 -0.35 0.79 16 33 H 0.07 1.03 7.87 -51.93 -0.41 0.62 16 34 H 0.04 0.69 5.37 -51.93 -0.28 0.42 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.05 1.18 8.03 -51.93 -0.42 0.77 16 37 H 0.07 1.70 7.84 -51.93 -0.41 1.29 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.06 1.21 7.57 -51.93 -0.39 0.82 16 40 H 0.06 1.38 3.56 -51.93 -0.19 1.20 16 41 H 0.12 1.75 6.80 -52.49 -0.36 1.40 16 LS Contribution 315.03 15.07 4.75 4.75 Total: -1.00 -29.48 315.03 -9.98 -39.46 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.36 Total: 2.46 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -2.78 Total: -26.81 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.56 Total: -36.51 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.48 -9.98 -39.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260058097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.848 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds