Wall clock time and date at job start Mon Mar 30 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38253 * 120.00275 * 2 1 4 4 C 1.38208 * 120.00483 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99639 * 359.74319 * 4 3 2 6 6 C 1.50698 * 119.99957 * 180.27741 * 5 4 3 7 7 C 1.38212 * 119.99916 * 0.50952 * 5 4 3 8 8 C 1.50707 * 120.00009 * 179.76405 * 7 5 4 9 9 N 1.46904 * 109.46900 * 91.26257 * 8 7 5 10 10 C 1.47443 * 111.00258 * 74.04487 * 9 8 7 11 11 C 1.54310 * 107.36938 * 236.66223 * 10 9 8 12 12 C 1.55401 * 102.90113 * 337.89456 * 11 10 9 13 13 H 1.09004 * 110.90344 * 277.37812 * 12 11 10 14 14 C 1.50699 * 111.02798 * 153.64100 * 12 11 10 15 15 H 1.08002 * 119.99761 * 247.60854 * 14 12 11 16 16 C 1.37875 * 120.00181 * 67.59764 * 14 12 11 17 17 N 1.31515 * 120.00228 * 0.02562 * 16 14 12 18 18 Si 1.86808 * 119.99926 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47158 * 60.00319 * 18 16 14 20 20 H 1.48502 * 109.46876 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46861 * 300.00156 * 18 16 14 22 22 C 1.47848 * 110.99636 * 313.20071 * 9 8 7 23 23 C 1.38215 * 119.99862 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.47765 * 270.02204 * 1 2 3 25 25 H 1.09000 * 109.47358 * 30.02425 * 1 2 3 26 26 H 1.09001 * 109.47058 * 150.02009 * 1 2 3 27 27 H 1.08005 * 119.99560 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.00391 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.47178 * 265.58993 * 6 5 4 30 30 H 1.08997 * 109.47238 * 25.58912 * 6 5 4 31 31 H 1.09005 * 109.47270 * 145.58724 * 6 5 4 32 32 H 1.08998 * 109.47049 * 331.26142 * 8 7 5 33 33 H 1.08994 * 109.47274 * 211.26305 * 8 7 5 34 34 H 1.09006 * 109.88282 * 356.14415 * 10 9 8 35 35 H 1.08993 * 109.88829 * 117.16962 * 10 9 8 36 36 H 1.08997 * 110.71067 * 96.17920 * 11 10 9 37 37 H 1.08997 * 110.70474 * 219.41426 * 11 10 9 38 38 H 0.96993 * 119.99930 * 179.97438 * 17 16 14 39 39 H 1.09001 * 110.37185 * 265.18869 * 22 9 8 40 40 H 1.08999 * 110.37804 * 27.53681 * 22 9 8 41 41 H 1.08002 * 120.00040 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0000 0.0064 6 6 5.7786 0.0000 0.0133 7 6 3.5806 -1.1970 0.0012 8 6 4.3341 -2.5021 0.0022 9 7 4.5462 -2.9439 1.3871 10 6 3.2954 -3.4570 1.9756 11 6 3.0193 -2.6400 3.2551 12 6 4.4246 -2.0896 3.6255 13 1 5.0009 -2.8334 4.1758 14 6 4.3138 -0.8079 4.4104 15 1 4.6462 0.1226 3.9745 16 6 3.7878 -0.8232 5.6847 17 7 3.3833 -1.9564 6.2156 18 14 3.6498 0.7657 6.6574 19 1 2.7829 1.7219 5.9230 20 1 3.0568 0.4811 7.9888 21 1 5.0006 1.3569 6.8337 22 6 5.0409 -1.8328 2.2277 23 6 2.1980 -1.1970 0.0005 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6583 2.1326 -0.0004 28 1 4.1204 2.1326 0.0010 29 1 6.1466 -0.0814 -1.0094 30 1 6.1399 0.9278 0.4567 31 1 6.1393 -0.8465 0.5977 32 1 5.2983 -2.3654 -0.4873 33 1 3.7575 -3.2550 -0.5350 34 1 2.4743 -3.3299 1.2700 35 1 3.4089 -4.5116 2.2262 36 1 2.3280 -1.8228 3.0491 37 1 2.6333 -3.2823 4.0467 38 1 3.0136 -1.9672 7.1123 39 1 6.1293 -1.8545 2.2832 40 1 4.6992 -0.8763 1.8322 41 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260058097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:42 Heat of formation + Delta-G solvation = 5.115797 kcal Electronic energy + Delta-G solvation = -20270.681535 eV Core-core repulsion = 17535.111796 eV Total energy + Delta-G solvation = -2735.569739 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34490 -38.99373 -35.51265 -34.67139 -33.11793 -30.95607 -30.49765 -29.56007 -27.22536 -25.84606 -25.40306 -23.00622 -21.94403 -21.48220 -20.39391 -18.55281 -17.08119 -16.74676 -16.68200 -16.23756 -16.14727 -15.59470 -14.71330 -14.69018 -14.26815 -14.18370 -14.05311 -13.69487 -13.56313 -13.49450 -13.12455 -12.99390 -12.74352 -12.64914 -12.44905 -12.31443 -12.20502 -12.03321 -11.84257 -11.68241 -11.41323 -11.05241 -10.86925 -10.48723 -9.69467 -9.18910 -9.09776 -8.13998 -6.23053 0.47208 0.53042 1.38101 1.39425 1.46934 2.40777 2.82286 3.16942 3.34496 3.83845 3.95316 4.05689 4.12402 4.16693 4.23684 4.37802 4.50392 4.50584 4.67347 4.72111 4.74509 4.80423 4.83556 4.86036 4.89157 4.91327 4.96122 5.08737 5.16644 5.25628 5.29365 5.35751 5.43092 5.56909 5.58745 5.72403 5.75421 5.80495 5.92551 6.09002 6.20683 6.32451 6.39389 6.85833 7.43837 8.95596 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016722 B = 0.007924 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.069267 B = 3532.707426 C = 3924.234960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.107 4.107 3 C -0.129 4.129 4 C -0.131 4.131 5 C -0.089 4.089 6 C -0.124 4.124 7 C -0.120 4.120 8 C 0.086 3.914 9 N -0.523 5.523 10 C 0.045 3.955 11 C -0.103 4.103 12 C 0.040 3.960 13 H -0.001 1.001 14 C -0.523 4.523 15 H 0.050 0.950 16 C 0.015 3.985 17 N -0.919 5.919 18 Si 0.949 3.051 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.269 1.269 22 C 0.042 3.958 23 C -0.120 4.120 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.029 0.971 37 H 0.039 0.961 38 H 0.260 0.740 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.189 3.613 -14.967 15.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.107 4.107 3 C -0.148 4.148 4 C -0.149 4.149 5 C -0.090 4.090 6 C -0.180 4.180 7 C -0.121 4.121 8 C -0.041 4.041 9 N -0.245 5.245 10 C -0.083 4.083 11 C -0.142 4.142 12 C 0.021 3.979 13 H 0.017 0.983 14 C -0.562 4.562 15 H 0.068 0.932 16 C -0.184 4.184 17 N -0.558 5.558 18 Si 0.775 3.225 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.084 4.084 23 C -0.138 4.138 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.154 0.846 28 H 0.152 0.848 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.874 3.096 -14.828 15.264 hybrid contribution -0.785 1.256 1.151 1.875 sum -2.659 4.352 -13.678 14.598 Atomic orbital electron populations 1.20779 0.89796 1.03687 1.02275 1.20191 0.97338 0.93144 1.00015 1.21249 0.94409 0.98120 1.00982 1.21263 0.94659 0.97948 1.01000 1.19979 0.96964 0.92794 0.99256 1.21103 0.90396 1.03446 1.03097 1.20532 0.94379 0.96505 1.00717 1.21499 1.00087 0.91840 0.90716 1.63960 1.27035 1.31528 1.02023 1.22840 0.91056 0.98810 0.95566 1.22442 0.99181 0.97236 0.95391 1.19715 0.92045 0.94596 0.91578 0.98269 1.21275 1.41028 0.94003 0.99869 0.93199 1.25717 0.95119 0.99005 0.98564 1.70080 1.42746 1.27026 1.15981 0.85747 0.78654 0.80318 0.77808 1.19821 1.20898 1.19385 1.23388 0.98204 0.93570 0.93276 1.21085 0.93698 0.97959 1.01077 0.91912 0.90088 0.90703 0.84626 0.84799 0.89585 0.91329 0.91165 0.88882 0.89243 0.92028 0.91400 0.95258 0.94221 0.93101 0.92323 0.91424 0.85982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.47 10.01 71.24 0.71 -1.76 16 2 C -0.11 -3.10 5.88 -19.87 -0.12 -3.22 16 3 C -0.13 -3.68 9.70 22.27 0.22 -3.46 16 4 C -0.13 -3.82 9.68 22.27 0.22 -3.61 16 5 C -0.09 -2.73 4.38 -19.87 -0.09 -2.82 16 6 C -0.12 -3.30 8.41 71.24 0.60 -2.70 16 7 C -0.12 -3.77 4.09 -19.86 -0.08 -3.86 16 8 C 0.09 2.58 5.17 85.56 0.44 3.02 16 9 N -0.52 -19.47 5.41 -890.10 -4.82 -24.29 16 10 C 0.04 1.74 6.40 86.64 0.55 2.29 16 11 C -0.10 -5.03 5.91 31.86 0.19 -4.84 16 12 C 0.04 2.08 2.84 -10.06 -0.03 2.05 16 13 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 14 C -0.52 -29.63 8.50 25.60 0.22 -29.42 16 15 H 0.05 2.79 7.77 -2.91 -0.02 2.77 16 16 C 0.01 0.84 5.37 84.65 0.45 1.30 16 17 N -0.92 -54.79 12.61 21.45 0.27 -54.52 16 18 Si 0.95 44.59 29.54 68.60 2.03 46.62 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 C 0.04 1.81 4.25 86.77 0.37 2.18 16 23 C -0.12 -3.69 8.48 22.27 0.19 -3.50 16 24 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.08 1.50 8.09 -2.39 -0.02 1.48 16 26 H 0.07 1.49 8.09 -2.39 -0.02 1.47 16 27 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 28 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 29 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 1.72 8.06 -2.39 -0.02 1.71 16 31 H 0.07 2.06 4.30 -2.38 -0.01 2.05 16 32 H 0.09 2.51 6.72 -2.39 -0.02 2.49 16 33 H 0.09 2.35 7.87 -2.39 -0.02 2.33 16 34 H 0.06 2.10 5.37 -2.38 -0.01 2.09 16 35 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.03 1.49 8.03 -2.39 -0.02 1.47 16 37 H 0.04 2.09 7.84 -2.39 -0.02 2.07 16 38 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 39 H 0.06 2.46 7.57 -2.39 -0.02 2.44 16 40 H 0.07 2.87 3.56 -2.39 -0.01 2.86 16 41 H 0.12 3.48 6.80 -2.91 -0.02 3.46 16 Total: -1.00 -63.59 315.03 2.33 -61.26 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 1.00 Total: 19.26 kcal Atomic # 6 Polarization: -52.17 SS G_CDS: 3.85 Total: -48.33 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -4.55 Total: -78.81 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -63.59 2.33 -61.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260058097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.378 kcal (2) G-P(sol) polarization free energy of solvation -63.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds