Wall clock time and date at job start Mon Mar 30 2020 06:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.50433 * 2 1 4 4 H 1.07994 * 119.99887 * 2.80801 * 3 2 1 5 5 C 1.37880 * 119.99765 * 182.80576 * 3 2 1 6 6 N 1.31517 * 119.99818 * 193.50392 * 5 3 2 7 7 Si 1.86794 * 120.00254 * 13.49757 * 5 3 2 8 8 H 1.48502 * 109.46831 * 84.55496 * 7 5 3 9 9 H 1.48496 * 109.47372 * 204.55367 * 7 5 3 10 10 H 1.48493 * 109.47367 * 324.55700 * 7 5 3 11 11 C 1.53122 * 109.50096 * 120.12268 * 2 1 3 12 12 C 1.53109 * 109.16238 * 62.28507 * 11 2 1 13 13 C 1.53040 * 109.28112 * 57.65596 * 12 11 2 14 14 N 1.46845 * 109.52271 * 300.81942 * 13 12 11 15 15 C 1.46893 * 111.00041 * 185.83641 * 14 13 12 16 16 C 1.50701 * 109.47088 * 45.79372 * 15 14 13 17 17 C 1.38240 * 119.99939 * 269.72573 * 16 15 14 18 18 C 1.38231 * 119.99999 * 179.76753 * 17 16 15 19 19 C 1.38232 * 119.99858 * 0.50554 * 18 17 16 20 20 C 1.38237 * 120.00310 * 359.74558 * 19 18 17 21 21 C 1.38232 * 120.00055 * 89.99881 * 16 15 14 22 22 C 1.46853 * 111.19547 * 61.74173 * 14 13 12 23 23 H 1.09000 * 109.47263 * 174.24393 * 1 2 3 24 24 H 1.08991 * 109.46939 * 294.24480 * 1 2 3 25 25 H 1.09000 * 109.46901 * 54.24575 * 1 2 3 26 26 H 0.97000 * 120.00301 * 180.02562 * 6 5 3 27 27 H 1.09000 * 109.52351 * 182.19120 * 11 2 1 28 28 H 1.09001 * 109.52218 * 302.31474 * 11 2 1 29 29 H 1.09008 * 109.50200 * 177.59536 * 12 11 2 30 30 H 1.09004 * 109.50666 * 297.67341 * 12 11 2 31 31 H 1.09005 * 109.46256 * 180.80324 * 13 12 11 32 32 H 1.08996 * 109.45925 * 60.83261 * 13 12 11 33 33 H 1.09000 * 109.46941 * 165.79025 * 15 14 13 34 34 H 1.08999 * 109.47359 * 285.78978 * 15 14 13 35 35 H 1.08001 * 119.99869 * 359.97438 * 17 16 15 36 36 H 1.08000 * 119.99922 * 180.22776 * 18 17 16 37 37 H 1.08001 * 119.99764 * 179.73247 * 19 18 17 38 38 H 1.08003 * 120.00050 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.00159 * 359.97438 * 21 16 15 40 40 H 1.08998 * 109.46096 * 58.27388 * 22 14 13 41 41 H 1.09005 * 109.46024 * 178.24369 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0331 1.4205 0.0000 4 1 1.3329 2.2414 0.0458 5 6 3.3875 1.6721 -0.0585 6 7 3.8446 2.8765 0.2064 7 14 4.5732 0.3023 -0.5137 8 1 4.6638 0.1971 -1.9922 9 1 5.9159 0.6041 0.0442 10 1 4.0826 -0.9831 0.0449 11 6 2.0412 -0.7244 1.2485 12 6 1.5749 -2.1822 1.2099 13 6 2.0845 -2.8420 -0.0735 14 7 1.5675 -2.1131 -1.2387 15 6 1.9223 -2.7987 -2.4884 16 6 1.6443 -4.2732 -2.3488 17 6 2.6306 -5.1213 -1.8808 18 6 2.3741 -6.4731 -1.7482 19 6 1.1347 -6.9785 -2.0935 20 6 0.1500 -6.1313 -2.5665 21 6 0.4049 -4.7787 -2.6942 22 6 2.0410 -0.7230 -1.2483 23 1 -0.3634 -1.0225 -0.1031 24 1 -0.3633 0.4220 0.9370 25 1 -0.3633 0.6005 -0.8340 26 1 4.7974 3.0536 0.1650 27 1 3.1305 -0.6907 1.2688 28 1 1.6451 -0.2377 2.1397 29 1 1.9715 -2.7141 2.0748 30 1 0.4856 -2.2166 1.2296 31 1 1.7422 -3.8762 -0.1108 32 1 3.1742 -2.8196 -0.0853 33 1 1.3278 -2.3928 -3.3069 34 1 2.9811 -2.6468 -2.6983 35 1 3.6005 -4.7271 -1.6155 36 1 3.1435 -7.1351 -1.3790 37 1 0.9357 -8.0353 -1.9940 38 1 -0.8182 -6.5263 -2.8367 39 1 -0.3643 -4.1168 -3.0637 40 1 3.1309 -0.7107 -1.2546 41 1 1.6670 -0.2181 -2.1391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261135392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:35 Heat of formation + Delta-G solvation = 43.553743 kcal Electronic energy + Delta-G solvation = -20205.910270 eV Core-core repulsion = 17472.007325 eV Total energy + Delta-G solvation = -2733.902945 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.77346 -38.41255 -34.60489 -32.34464 -30.99243 -30.73617 -30.69243 -26.24302 -25.98758 -24.82512 -22.57851 -22.48294 -21.45869 -20.24330 -18.51074 -16.81321 -16.34495 -15.46923 -15.27628 -15.09455 -14.81344 -14.03346 -13.67697 -13.49433 -13.31869 -12.95125 -12.75058 -12.51372 -12.45905 -12.17123 -11.86639 -11.61159 -11.10479 -11.08392 -10.90824 -10.69216 -10.46919 -10.24444 -9.98480 -9.88809 -9.42949 -8.96785 -8.88574 -8.76865 -8.66416 -8.37399 -7.47392 -6.11371 -4.06677 1.34808 1.41772 3.22945 3.29347 3.37913 3.75935 4.36663 4.58570 4.83072 4.88402 4.99070 5.11838 5.18328 5.41477 5.51468 5.59326 5.64434 5.75196 5.80427 5.92982 6.01238 6.05588 6.07410 6.22624 6.27041 6.41788 6.46155 6.49507 6.49847 6.58096 6.67995 6.70558 6.78142 6.93528 7.00535 7.01267 7.11374 7.45463 7.56979 7.60633 7.66400 7.92134 8.56623 8.97315 9.54603 11.02172 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.030848 B = 0.006355 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.460869 B = 4405.253854 C = 4674.225590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.050 3.950 3 C -0.507 4.507 4 H 0.075 0.925 5 C 0.074 3.926 6 N -0.895 5.895 7 Si 0.875 3.125 8 H -0.289 1.289 9 H -0.306 1.306 10 H -0.243 1.243 11 C -0.119 4.119 12 C -0.118 4.118 13 C 0.055 3.945 14 N -0.525 5.525 15 C 0.086 3.914 16 C -0.070 4.070 17 C -0.115 4.115 18 C -0.123 4.123 19 C -0.127 4.127 20 C -0.123 4.123 21 C -0.100 4.100 22 C 0.055 3.945 23 H 0.046 0.954 24 H 0.036 0.964 25 H 0.038 0.962 26 H 0.263 0.737 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.020 0.980 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.212 -17.687 -4.124 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.049 3.951 3 C -0.545 4.545 4 H 0.093 0.907 5 C -0.128 4.128 6 N -0.532 5.532 7 Si 0.708 3.292 8 H -0.217 1.217 9 H -0.235 1.235 10 H -0.169 1.169 11 C -0.157 4.157 12 C -0.156 4.156 13 C -0.073 4.073 14 N -0.250 5.250 15 C -0.042 4.042 16 C -0.070 4.070 17 C -0.134 4.134 18 C -0.141 4.141 19 C -0.145 4.145 20 C -0.141 4.141 21 C -0.119 4.119 22 C -0.071 4.071 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.038 0.962 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.564 -17.520 -4.070 18.556 hybrid contribution 1.833 -0.595 -0.406 1.969 sum -2.731 -18.115 -4.477 18.859 Atomic orbital electron populations 1.21603 0.96357 0.99574 0.99629 1.18461 0.93385 0.94100 0.89204 1.21006 0.92353 0.90481 1.50682 0.90687 1.25033 0.98195 0.95086 0.94502 1.69952 1.14092 1.21314 1.47837 0.87477 0.79419 0.84054 0.78225 1.21718 1.23464 1.16928 1.22143 1.00671 0.92757 1.00112 1.21669 1.01137 0.97601 0.95146 1.22160 0.96649 0.97305 0.91175 1.62255 1.59448 1.02834 1.00431 1.21150 0.99067 0.89529 0.94426 1.19884 0.93978 0.95319 0.97867 1.21118 0.99164 0.93540 0.99539 1.21071 0.97163 0.95222 1.00615 1.21090 0.93791 0.99507 1.00157 1.21131 0.99084 0.93717 1.00129 1.21051 0.96308 0.95091 0.99411 1.22908 0.96291 0.85989 1.01917 0.93458 0.94515 0.94237 0.92729 0.92448 0.92600 0.93278 0.91587 0.91349 0.95707 0.89986 0.94649 0.86528 0.86385 0.86479 0.86282 0.85810 0.96221 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 7.89 37.16 0.29 -2.06 16 2 C 0.05 1.14 0.50 -155.58 -0.08 1.06 16 3 C -0.51 -13.96 8.63 -34.44 -0.30 -14.26 16 4 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 5 C 0.07 2.10 5.36 -17.82 -0.10 2.00 16 6 N -0.89 -27.23 13.96 55.43 0.77 -26.46 16 7 Si 0.87 21.66 22.90 -169.99 -3.89 17.77 16 8 H -0.29 -7.16 7.10 56.52 0.40 -6.76 16 9 H -0.31 -7.77 7.11 56.52 0.40 -7.37 16 10 H -0.24 -5.58 3.15 56.52 0.18 -5.40 16 11 C -0.12 -2.57 4.34 -26.61 -0.12 -2.69 16 12 C -0.12 -2.13 5.74 -26.65 -0.15 -2.28 16 13 C 0.05 0.97 4.40 -3.83 -0.02 0.95 16 14 N -0.53 -9.59 3.99 -236.11 -0.94 -10.53 16 15 C 0.09 1.35 5.43 -4.98 -0.03 1.33 16 16 C -0.07 -0.98 4.11 -104.62 -0.43 -1.41 16 17 C -0.11 -1.51 7.82 -39.58 -0.31 -1.82 16 18 C -0.12 -1.39 10.05 -39.59 -0.40 -1.79 16 19 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 20 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 21 C -0.10 -1.26 9.70 -39.58 -0.38 -1.64 16 22 C 0.06 1.19 3.37 -3.83 -0.01 1.17 16 23 H 0.05 0.90 6.15 -51.93 -0.32 0.58 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.06 1.32 4.24 -51.93 -0.22 1.10 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 30 H 0.07 1.16 6.72 -51.93 -0.35 0.81 16 31 H 0.07 1.12 5.65 -51.93 -0.29 0.82 16 32 H 0.02 0.47 6.97 -51.93 -0.36 0.10 16 33 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 34 H 0.04 0.58 8.02 -51.93 -0.42 0.17 16 35 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 39 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.02 0.46 2.08 -51.93 -0.11 0.36 16 41 H 0.07 1.51 8.12 -51.93 -0.42 1.09 16 LS Contribution 300.82 15.07 4.53 4.53 Total: -1.00 -29.62 300.82 -8.84 -38.46 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.49 Total: 1.15 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -2.82 Total: -24.92 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.17 Total: -36.99 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -3.89 Total: 17.77 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.62 -8.84 -38.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261135392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.010 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds