Wall clock time and date at job start Mon Mar 30 2020 06:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.50433 * 2 1 4 4 H 1.07994 * 119.99887 * 2.80801 * 3 2 1 5 5 C 1.37880 * 119.99765 * 182.80576 * 3 2 1 6 6 N 1.31517 * 119.99818 * 193.50392 * 5 3 2 7 7 Si 1.86794 * 120.00254 * 13.49757 * 5 3 2 8 8 H 1.48502 * 109.46831 * 84.55496 * 7 5 3 9 9 H 1.48496 * 109.47372 * 204.55367 * 7 5 3 10 10 H 1.48493 * 109.47367 * 324.55700 * 7 5 3 11 11 C 1.53122 * 109.50096 * 120.12268 * 2 1 3 12 12 C 1.53109 * 109.16238 * 62.28507 * 11 2 1 13 13 C 1.53040 * 109.28112 * 57.65596 * 12 11 2 14 14 N 1.46845 * 109.52271 * 300.81942 * 13 12 11 15 15 C 1.46893 * 111.00041 * 185.83641 * 14 13 12 16 16 C 1.50701 * 109.47088 * 45.79372 * 15 14 13 17 17 C 1.38240 * 119.99939 * 269.72573 * 16 15 14 18 18 C 1.38231 * 119.99999 * 179.76753 * 17 16 15 19 19 C 1.38232 * 119.99858 * 0.50554 * 18 17 16 20 20 C 1.38237 * 120.00310 * 359.74558 * 19 18 17 21 21 C 1.38232 * 120.00055 * 89.99881 * 16 15 14 22 22 C 1.46853 * 111.19547 * 61.74173 * 14 13 12 23 23 H 1.09000 * 109.47263 * 174.24393 * 1 2 3 24 24 H 1.08991 * 109.46939 * 294.24480 * 1 2 3 25 25 H 1.09000 * 109.46901 * 54.24575 * 1 2 3 26 26 H 0.97000 * 120.00301 * 180.02562 * 6 5 3 27 27 H 1.09000 * 109.52351 * 182.19120 * 11 2 1 28 28 H 1.09001 * 109.52218 * 302.31474 * 11 2 1 29 29 H 1.09008 * 109.50200 * 177.59536 * 12 11 2 30 30 H 1.09004 * 109.50666 * 297.67341 * 12 11 2 31 31 H 1.09005 * 109.46256 * 180.80324 * 13 12 11 32 32 H 1.08996 * 109.45925 * 60.83261 * 13 12 11 33 33 H 1.09000 * 109.46941 * 165.79025 * 15 14 13 34 34 H 1.08999 * 109.47359 * 285.78978 * 15 14 13 35 35 H 1.08001 * 119.99869 * 359.97438 * 17 16 15 36 36 H 1.08000 * 119.99922 * 180.22776 * 18 17 16 37 37 H 1.08001 * 119.99764 * 179.73247 * 19 18 17 38 38 H 1.08003 * 120.00050 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.00159 * 359.97438 * 21 16 15 40 40 H 1.08998 * 109.46096 * 58.27388 * 22 14 13 41 41 H 1.09005 * 109.46024 * 178.24369 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0331 1.4205 0.0000 4 1 1.3329 2.2414 0.0458 5 6 3.3875 1.6721 -0.0585 6 7 3.8446 2.8765 0.2064 7 14 4.5732 0.3023 -0.5137 8 1 4.6638 0.1971 -1.9922 9 1 5.9159 0.6041 0.0442 10 1 4.0826 -0.9831 0.0449 11 6 2.0412 -0.7244 1.2485 12 6 1.5749 -2.1822 1.2099 13 6 2.0845 -2.8420 -0.0735 14 7 1.5675 -2.1131 -1.2387 15 6 1.9223 -2.7987 -2.4884 16 6 1.6443 -4.2732 -2.3488 17 6 2.6306 -5.1213 -1.8808 18 6 2.3741 -6.4731 -1.7482 19 6 1.1347 -6.9785 -2.0935 20 6 0.1500 -6.1313 -2.5665 21 6 0.4049 -4.7787 -2.6942 22 6 2.0410 -0.7230 -1.2483 23 1 -0.3634 -1.0225 -0.1031 24 1 -0.3633 0.4220 0.9370 25 1 -0.3633 0.6005 -0.8340 26 1 4.7974 3.0536 0.1650 27 1 3.1305 -0.6907 1.2688 28 1 1.6451 -0.2377 2.1397 29 1 1.9715 -2.7141 2.0748 30 1 0.4856 -2.2166 1.2296 31 1 1.7422 -3.8762 -0.1108 32 1 3.1742 -2.8196 -0.0853 33 1 1.3278 -2.3928 -3.3069 34 1 2.9811 -2.6468 -2.6983 35 1 3.6005 -4.7271 -1.6155 36 1 3.1435 -7.1351 -1.3790 37 1 0.9357 -8.0353 -1.9940 38 1 -0.8182 -6.5263 -2.8367 39 1 -0.3643 -4.1168 -3.0637 40 1 3.1309 -0.7107 -1.2546 41 1 1.6670 -0.2181 -2.1391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261135392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:34 Heat of formation + Delta-G solvation = 25.898215 kcal Electronic energy + Delta-G solvation = -20206.675871 eV Core-core repulsion = 17472.007325 eV Total energy + Delta-G solvation = -2734.668546 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.03207 -39.67351 -36.12814 -34.23345 -32.55250 -31.89642 -31.72337 -27.98355 -27.26377 -26.76314 -23.93276 -23.49513 -22.77634 -21.52104 -20.36759 -18.43315 -17.49828 -17.12723 -16.66521 -16.18949 -16.13894 -15.52638 -15.14599 -14.99379 -14.76699 -14.48799 -14.20111 -13.95865 -13.66689 -13.55022 -13.34227 -13.05752 -12.74685 -12.49712 -12.22204 -12.12216 -11.90798 -11.86850 -11.80500 -11.61926 -11.15637 -10.82088 -10.57268 -10.43546 -9.75311 -9.64947 -8.99590 -8.34148 -6.32444 0.44836 0.55383 1.23713 1.26296 1.37083 2.26495 2.78735 3.01531 3.25795 3.78537 3.96213 4.09982 4.15184 4.18129 4.21099 4.32723 4.40827 4.42847 4.55455 4.64221 4.68938 4.73878 4.80259 4.85322 4.87585 5.00299 5.06195 5.13131 5.14012 5.20904 5.27539 5.30910 5.41699 5.60570 5.65770 5.66601 5.76078 5.78830 5.87918 6.10531 6.17573 6.21736 6.39926 6.76191 7.32352 8.83212 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.030848 B = 0.006355 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.460869 B = 4405.253854 C = 4674.225590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.043 3.957 3 C -0.508 4.508 4 H 0.034 0.966 5 C 0.022 3.978 6 N -0.945 5.945 7 Si 0.933 3.067 8 H -0.289 1.289 9 H -0.315 1.315 10 H -0.213 1.213 11 C -0.119 4.119 12 C -0.111 4.111 13 C 0.058 3.942 14 N -0.522 5.522 15 C 0.086 3.914 16 C -0.088 4.088 17 C -0.128 4.128 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.109 4.109 22 C 0.062 3.938 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.031 0.969 26 H 0.263 0.737 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.015 0.985 33 H 0.088 0.912 34 H 0.026 0.974 35 H 0.112 0.888 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.128 0.872 40 H 0.006 0.994 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.002 -21.794 -4.328 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.042 3.958 3 C -0.546 4.546 4 H 0.052 0.948 5 C -0.175 4.175 6 N -0.585 5.585 7 Si 0.765 3.235 8 H -0.217 1.217 9 H -0.244 1.244 10 H -0.138 1.138 11 C -0.157 4.157 12 C -0.149 4.149 13 C -0.070 4.070 14 N -0.246 5.246 15 C -0.041 4.041 16 C -0.088 4.088 17 C -0.147 4.147 18 C -0.143 4.143 19 C -0.142 4.142 20 C -0.141 4.141 21 C -0.128 4.128 22 C -0.065 4.065 23 H 0.088 0.912 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.034 0.966 33 H 0.106 0.894 34 H 0.045 0.955 35 H 0.130 0.870 36 H 0.157 0.843 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.146 0.854 40 H 0.023 0.977 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.380 -21.657 -4.278 22.722 hybrid contribution 1.970 0.685 -0.360 2.116 sum -3.411 -20.973 -4.638 21.748 Atomic orbital electron populations 1.21507 0.94703 1.00748 0.99276 1.18469 0.94826 0.91613 0.90880 1.21316 0.91747 0.92225 1.49352 0.94818 1.25753 1.00019 0.97178 0.94590 1.70093 1.14439 1.23752 1.50199 0.86540 0.76553 0.82650 0.77806 1.21707 1.24439 1.13782 1.22039 0.99532 0.95318 0.98786 1.21638 1.01790 0.94952 0.96499 1.22194 0.96069 0.98210 0.90515 1.62174 1.59170 1.01343 1.01961 1.21164 0.98624 0.91063 0.93227 1.19735 0.95106 0.93986 0.99993 1.21187 0.98879 0.94456 1.00188 1.21353 0.98160 0.94706 1.00073 1.21477 0.93157 1.00942 0.98607 1.21448 1.00332 0.93035 0.99293 1.21192 0.95895 0.96147 0.99540 1.22598 0.95144 0.88222 1.00513 0.91235 0.94725 0.94938 0.92818 0.94026 0.93348 0.90827 0.90612 0.89212 0.96638 0.89411 0.95547 0.86994 0.84340 0.83702 0.83890 0.85433 0.97653 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.25 7.89 71.98 0.57 -3.68 16 2 C 0.04 1.96 0.50 -52.87 -0.03 1.94 16 3 C -0.51 -28.88 8.63 25.60 0.22 -28.65 16 4 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 5 C 0.02 1.29 5.36 84.65 0.45 1.74 16 6 N -0.94 -59.86 13.96 21.45 0.30 -59.56 16 7 Si 0.93 45.66 22.90 68.60 1.57 47.23 16 8 H -0.29 -14.01 7.10 99.48 0.71 -13.31 16 9 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 10 H -0.21 -9.36 3.15 99.48 0.31 -9.05 16 11 C -0.12 -4.98 4.34 30.67 0.13 -4.84 16 12 C -0.11 -3.66 5.74 30.64 0.18 -3.49 16 13 C 0.06 1.86 4.40 86.33 0.38 2.24 16 14 N -0.52 -17.94 3.99 -900.91 -3.59 -21.53 16 15 C 0.09 2.57 5.43 85.56 0.46 3.04 16 16 C -0.09 -2.22 4.11 -19.86 -0.08 -2.30 16 17 C -0.13 -3.00 7.82 22.27 0.17 -2.83 16 18 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 19 C -0.12 -2.07 10.05 22.27 0.22 -1.85 16 20 C -0.12 -2.21 10.05 22.27 0.22 -1.98 16 21 C -0.11 -2.41 9.70 22.27 0.22 -2.19 16 22 C 0.06 2.62 3.37 86.33 0.29 2.91 16 23 H 0.07 2.49 6.15 -2.39 -0.01 2.47 16 24 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 25 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 27 H 0.04 1.85 4.24 -2.39 -0.01 1.84 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.08 2.38 6.72 -2.38 -0.02 2.36 16 31 H 0.09 2.58 5.65 -2.38 -0.01 2.57 16 32 H 0.02 0.53 6.97 -2.39 -0.02 0.52 16 33 H 0.09 2.46 8.09 -2.39 -0.02 2.44 16 34 H 0.03 0.83 8.02 -2.39 -0.02 0.81 16 35 H 0.11 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 38 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 39 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 40 H 0.01 0.27 2.08 -2.39 0.00 0.27 16 41 H 0.06 2.65 8.12 -2.38 -0.02 2.63 16 Total: -1.00 -65.49 300.82 2.52 -62.96 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.60 Total: 12.98 kcal Atomic # 6 Polarization: -45.73 SS G_CDS: 3.64 Total: -42.09 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -3.29 Total: -81.08 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.57 Total: 47.23 kcal Total: -65.49 2.52 -62.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261135392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.862 kcal (2) G-P(sol) polarization free energy of solvation -65.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds