Wall clock time and date at job start Mon Mar 30 2020 06:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.53427 * 2 1 4 4 H 1.07996 * 120.00476 * 120.10085 * 3 2 1 5 5 C 1.37879 * 119.99955 * 300.10145 * 3 2 1 6 6 N 1.31513 * 120.00126 * 359.97438 * 5 3 2 7 7 Si 1.86809 * 120.00078 * 180.02562 * 5 3 2 8 8 H 1.48499 * 109.46820 * 59.99762 * 7 5 3 9 9 H 1.48497 * 109.47128 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46796 * 299.99682 * 7 5 3 11 11 C 1.53124 * 109.49962 * 239.90565 * 2 1 3 12 12 C 1.53119 * 109.15841 * 297.70804 * 11 2 1 13 13 C 1.53040 * 109.28089 * 302.34776 * 12 11 2 14 14 N 1.46846 * 109.51964 * 59.17912 * 13 12 11 15 15 C 1.46902 * 110.99617 * 174.15808 * 14 13 12 16 16 C 1.50697 * 109.47604 * 294.20982 * 15 14 13 17 17 C 1.38237 * 120.00158 * 269.72704 * 16 15 14 18 18 C 1.38231 * 119.99982 * 179.76494 * 17 16 15 19 19 C 1.38235 * 120.00068 * 0.50516 * 18 17 16 20 20 C 1.38242 * 120.00083 * 359.75026 * 19 18 17 21 21 C 1.38234 * 119.99652 * 359.97438 * 20 19 18 22 22 C 1.46846 * 111.19997 * 298.25655 * 14 13 12 23 23 H 1.08999 * 109.46982 * 299.89676 * 1 2 3 24 24 H 1.08999 * 109.47594 * 59.90206 * 1 2 3 25 25 H 1.09000 * 109.47205 * 179.90131 * 1 2 3 26 26 H 0.97003 * 119.99788 * 180.02562 * 6 5 3 27 27 H 1.08998 * 109.52523 * 57.61437 * 11 2 1 28 28 H 1.08999 * 109.52008 * 177.81113 * 11 2 1 29 29 H 1.09004 * 109.50189 * 62.29271 * 12 11 2 30 30 H 1.09001 * 109.50740 * 182.36562 * 12 11 2 31 31 H 1.08996 * 109.46572 * 299.16374 * 13 12 11 32 32 H 1.09004 * 109.46207 * 179.19455 * 13 12 11 33 33 H 1.08997 * 109.47248 * 54.21397 * 15 14 13 34 34 H 1.09007 * 109.47019 * 174.20503 * 15 14 13 35 35 H 1.08004 * 119.99634 * 0.02562 * 17 16 15 36 36 H 1.07998 * 120.00215 * 180.23302 * 18 17 16 37 37 H 1.07997 * 120.00277 * 179.72466 * 19 18 17 38 38 H 1.07994 * 120.00433 * 179.97438 * 20 19 18 39 39 H 1.08004 * 120.00069 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.45990 * 181.76055 * 22 14 13 41 41 H 1.08999 * 109.46398 * 301.73978 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0339 1.4202 0.0000 4 1 2.6565 1.7723 0.8091 5 6 1.7000 2.2701 -1.0330 6 7 0.9422 1.8413 -2.0186 7 14 2.3252 4.0305 -1.0334 8 1 3.8102 4.0283 -1.0363 9 1 1.8283 4.7320 -2.2443 10 1 1.8335 4.7306 0.1803 11 6 2.0411 -0.7238 -1.2488 12 6 1.5749 -2.1818 -1.2108 13 6 2.0846 -2.8420 0.0723 14 7 1.5676 -2.1134 1.2378 15 6 1.9224 -2.7996 2.4873 16 6 1.2172 -4.1301 2.5476 17 6 -0.0336 -4.2237 3.1286 18 6 -0.6825 -5.4431 3.1796 19 6 -0.0762 -6.5710 2.6589 20 6 1.1770 -6.4785 2.0826 21 6 1.8234 -5.2579 2.0265 22 6 2.0410 -0.7234 1.2480 23 1 -0.3633 0.5122 0.8909 24 1 -0.3634 0.5153 -0.8891 25 1 -0.3633 -1.0277 -0.0018 26 1 0.7076 2.4392 -2.7456 27 1 1.6440 -0.2375 -2.1399 28 1 3.1304 -0.6901 -1.2691 29 1 0.4856 -2.2161 -1.2299 30 1 1.9708 -2.7132 -2.0762 31 1 3.1743 -2.8196 0.0842 32 1 1.7423 -3.8762 0.1093 33 1 3.0003 -2.9579 2.5215 34 1 1.6179 -2.1881 3.3367 35 1 -0.5056 -3.3432 3.5390 36 1 -1.6614 -5.5156 3.6301 37 1 -0.5812 -7.5246 2.7027 38 1 1.6509 -7.3597 1.6762 39 1 2.8026 -5.1856 1.5767 40 1 1.6670 -0.2190 2.1389 41 1 3.1309 -0.7110 1.2541 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261135398.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:37 Heat of formation + Delta-G solvation = 20.551819 kcal Electronic energy + Delta-G solvation = -19793.156017 eV Core-core repulsion = 17058.255634 eV Total energy + Delta-G solvation = -2734.900383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.46123 -38.09776 -34.52653 -32.23237 -30.84737 -30.50886 -30.16611 -25.79519 -25.38888 -24.93660 -22.48817 -22.23456 -21.28889 -20.40570 -17.68573 -16.69950 -16.13045 -15.19708 -15.07114 -14.91238 -14.56998 -13.87746 -13.55754 -13.31735 -13.22956 -12.77454 -12.47464 -12.42577 -12.18916 -11.75908 -11.32972 -11.13338 -11.00970 -10.85154 -10.82200 -10.62546 -10.32500 -10.14326 -9.99246 -9.67935 -9.23279 -8.95424 -8.77617 -8.60106 -8.49689 -8.22471 -7.54774 -5.89781 -4.00028 1.46054 1.51615 3.33588 3.38486 3.41015 3.85886 4.44542 4.73495 4.94521 4.98940 5.09008 5.20915 5.34757 5.49032 5.61351 5.73943 5.75526 5.87554 5.92483 6.12986 6.13627 6.16896 6.31135 6.43502 6.53558 6.56351 6.59393 6.73083 6.77616 6.81352 6.96196 7.10719 7.12255 7.23803 7.42889 7.55823 7.75163 7.78230 7.85223 7.88768 8.20149 8.36570 8.57187 9.01126 9.64519 11.10603 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.041789 B = 0.004759 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.873249 B = 5881.619643 C = 5996.825220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.078 3.922 3 C -0.508 4.508 4 H 0.051 0.949 5 C 0.067 3.933 6 N -0.884 5.884 7 Si 0.888 3.112 8 H -0.279 1.279 9 H -0.288 1.288 10 H -0.278 1.278 11 C -0.104 4.104 12 C -0.119 4.119 13 C 0.060 3.940 14 N -0.526 5.526 15 C 0.089 3.911 16 C -0.064 4.064 17 C -0.099 4.099 18 C -0.123 4.123 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.115 4.115 22 C 0.072 3.928 23 H 0.016 0.984 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.259 0.741 27 H 0.091 0.909 28 H 0.027 0.973 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.019 0.981 32 H 0.062 0.938 33 H 0.034 0.966 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.058 0.942 41 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.254 -13.563 7.139 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 C -0.547 4.547 4 H 0.069 0.931 5 C -0.134 4.134 6 N -0.523 5.523 7 Si 0.716 3.284 8 H -0.205 1.205 9 H -0.214 1.214 10 H -0.204 1.204 11 C -0.142 4.142 12 C -0.157 4.157 13 C -0.068 4.068 14 N -0.251 5.251 15 C -0.039 4.039 16 C -0.064 4.064 17 C -0.118 4.118 18 C -0.141 4.141 19 C -0.147 4.147 20 C -0.142 4.142 21 C -0.134 4.134 22 C -0.054 4.054 23 H 0.035 0.965 24 H 0.092 0.908 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.077 0.923 41 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -0.836 -13.458 6.925 15.158 hybrid contribution 1.271 0.942 0.029 1.582 sum 0.435 -12.516 6.954 14.325 Atomic orbital electron populations 1.21683 0.97373 0.97783 1.00936 1.18060 0.93182 0.92500 0.88488 1.21069 1.31097 0.95589 1.06940 0.93066 1.24871 0.94959 0.98031 0.95531 1.69824 1.36613 1.35271 1.10567 0.86730 0.79102 0.85245 0.77291 1.20491 1.21368 1.20411 1.21646 0.97862 0.91549 1.03182 1.21714 1.01285 0.98457 0.94211 1.22107 0.95971 0.97108 0.91593 1.62000 1.59990 1.02908 1.00166 1.21060 0.96387 0.91870 0.94601 1.19882 0.94979 0.94730 0.96843 1.21056 0.94316 0.97463 0.98951 1.21121 0.99735 0.92940 1.00306 1.21070 0.95687 0.98360 0.99581 1.21064 0.95558 0.97419 1.00172 1.21073 1.00095 0.92513 0.99717 1.22330 0.96006 0.85790 1.01301 0.96459 0.90758 0.95731 0.93126 0.89051 0.95367 0.91707 0.93835 0.96244 0.92006 0.94809 0.90350 0.85962 0.86378 0.86589 0.86498 0.86515 0.92315 0.96508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 7.81 37.16 0.29 -2.65 16 2 C 0.08 1.90 0.49 -155.58 -0.08 1.82 16 3 C -0.51 -13.65 8.02 -34.44 -0.28 -13.93 16 4 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 5 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 6 N -0.88 -24.36 9.39 55.43 0.52 -23.84 16 7 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 8 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 9 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 C -0.10 -2.46 4.53 -26.61 -0.12 -2.58 16 12 C -0.12 -2.38 5.74 -26.65 -0.15 -2.53 16 13 C 0.06 1.09 5.16 -3.83 -0.02 1.07 16 14 N -0.53 -9.79 3.93 -236.11 -0.93 -10.71 16 15 C 0.09 1.37 5.12 -4.98 -0.03 1.35 16 16 C -0.06 -0.91 4.89 -104.62 -0.51 -1.42 16 17 C -0.10 -1.34 9.70 -39.58 -0.38 -1.72 16 18 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 19 C -0.13 -1.45 10.05 -39.58 -0.40 -1.84 16 20 C -0.12 -1.45 10.05 -39.58 -0.40 -1.84 16 21 C -0.12 -1.51 7.88 -39.58 -0.31 -1.82 16 22 C 0.07 1.54 4.12 -3.84 -0.02 1.52 16 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 1.99 6.07 -51.93 -0.32 1.67 16 25 H 0.02 0.56 6.01 -51.93 -0.31 0.25 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.35 6.58 -51.93 -0.34 1.01 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 1.03 5.75 -51.93 -0.30 0.73 16 33 H 0.03 0.51 8.07 -51.93 -0.42 0.09 16 34 H 0.08 1.16 7.93 -51.93 -0.41 0.75 16 35 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.43 7.95 -52.48 -0.42 1.01 16 40 H 0.06 1.24 8.02 -51.93 -0.42 0.83 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 314.45 15.07 4.74 4.74 Total: -1.00 -27.55 314.45 -10.18 -37.73 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.60 Total: 0.76 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -2.89 Total: -24.72 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.41 Total: -34.55 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.55 -10.18 -37.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261135398.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.281 kcal (2) G-P(sol) polarization free energy of solvation -27.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds