Wall clock time and date at job start Mon Mar 30 2020 06:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.53427 * 2 1 4 4 H 1.07996 * 120.00476 * 120.10085 * 3 2 1 5 5 C 1.37879 * 119.99955 * 300.10145 * 3 2 1 6 6 N 1.31513 * 120.00126 * 359.97438 * 5 3 2 7 7 Si 1.86809 * 120.00078 * 180.02562 * 5 3 2 8 8 H 1.48499 * 109.46820 * 59.99762 * 7 5 3 9 9 H 1.48497 * 109.47128 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46796 * 299.99682 * 7 5 3 11 11 C 1.53124 * 109.49962 * 239.90565 * 2 1 3 12 12 C 1.53119 * 109.15841 * 297.70804 * 11 2 1 13 13 C 1.53040 * 109.28089 * 302.34776 * 12 11 2 14 14 N 1.46846 * 109.51964 * 59.17912 * 13 12 11 15 15 C 1.46902 * 110.99617 * 174.15808 * 14 13 12 16 16 C 1.50697 * 109.47604 * 294.20982 * 15 14 13 17 17 C 1.38237 * 120.00158 * 269.72704 * 16 15 14 18 18 C 1.38231 * 119.99982 * 179.76494 * 17 16 15 19 19 C 1.38235 * 120.00068 * 0.50516 * 18 17 16 20 20 C 1.38242 * 120.00083 * 359.75026 * 19 18 17 21 21 C 1.38234 * 119.99652 * 359.97438 * 20 19 18 22 22 C 1.46846 * 111.19997 * 298.25655 * 14 13 12 23 23 H 1.08999 * 109.46982 * 299.89676 * 1 2 3 24 24 H 1.08999 * 109.47594 * 59.90206 * 1 2 3 25 25 H 1.09000 * 109.47205 * 179.90131 * 1 2 3 26 26 H 0.97003 * 119.99788 * 180.02562 * 6 5 3 27 27 H 1.08998 * 109.52523 * 57.61437 * 11 2 1 28 28 H 1.08999 * 109.52008 * 177.81113 * 11 2 1 29 29 H 1.09004 * 109.50189 * 62.29271 * 12 11 2 30 30 H 1.09001 * 109.50740 * 182.36562 * 12 11 2 31 31 H 1.08996 * 109.46572 * 299.16374 * 13 12 11 32 32 H 1.09004 * 109.46207 * 179.19455 * 13 12 11 33 33 H 1.08997 * 109.47248 * 54.21397 * 15 14 13 34 34 H 1.09007 * 109.47019 * 174.20503 * 15 14 13 35 35 H 1.08004 * 119.99634 * 0.02562 * 17 16 15 36 36 H 1.07998 * 120.00215 * 180.23302 * 18 17 16 37 37 H 1.07997 * 120.00277 * 179.72466 * 19 18 17 38 38 H 1.07994 * 120.00433 * 179.97438 * 20 19 18 39 39 H 1.08004 * 120.00069 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.45990 * 181.76055 * 22 14 13 41 41 H 1.08999 * 109.46398 * 301.73978 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0339 1.4202 0.0000 4 1 2.6565 1.7723 0.8091 5 6 1.7000 2.2701 -1.0330 6 7 0.9422 1.8413 -2.0186 7 14 2.3252 4.0305 -1.0334 8 1 3.8102 4.0283 -1.0363 9 1 1.8283 4.7320 -2.2443 10 1 1.8335 4.7306 0.1803 11 6 2.0411 -0.7238 -1.2488 12 6 1.5749 -2.1818 -1.2108 13 6 2.0846 -2.8420 0.0723 14 7 1.5676 -2.1134 1.2378 15 6 1.9224 -2.7996 2.4873 16 6 1.2172 -4.1301 2.5476 17 6 -0.0336 -4.2237 3.1286 18 6 -0.6825 -5.4431 3.1796 19 6 -0.0762 -6.5710 2.6589 20 6 1.1770 -6.4785 2.0826 21 6 1.8234 -5.2579 2.0265 22 6 2.0410 -0.7234 1.2480 23 1 -0.3633 0.5122 0.8909 24 1 -0.3634 0.5153 -0.8891 25 1 -0.3633 -1.0277 -0.0018 26 1 0.7076 2.4392 -2.7456 27 1 1.6440 -0.2375 -2.1399 28 1 3.1304 -0.6901 -1.2691 29 1 0.4856 -2.2161 -1.2299 30 1 1.9708 -2.7132 -2.0762 31 1 3.1743 -2.8196 0.0842 32 1 1.7423 -3.8762 0.1093 33 1 3.0003 -2.9579 2.5215 34 1 1.6179 -2.1881 3.3367 35 1 -0.5056 -3.3432 3.5390 36 1 -1.6614 -5.5156 3.6301 37 1 -0.5812 -7.5246 2.7027 38 1 1.6509 -7.3597 1.6762 39 1 2.8026 -5.1856 1.5767 40 1 1.6670 -0.2190 2.1389 41 1 3.1309 -0.7110 1.2541 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261135398.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:36 Heat of formation + Delta-G solvation = 7.492835 kcal Electronic energy + Delta-G solvation = -19793.722297 eV Core-core repulsion = 17058.255634 eV Total energy + Delta-G solvation = -2735.466663 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.68000 -39.49052 -36.16371 -33.89628 -32.19893 -31.71374 -31.62727 -27.37105 -27.06050 -26.86707 -23.74585 -23.49210 -22.74679 -21.65508 -19.50043 -18.16371 -17.48416 -16.82796 -16.38359 -16.16945 -16.02624 -15.33763 -15.04812 -14.90194 -14.43432 -14.24456 -14.07599 -13.70287 -13.40595 -13.28808 -13.08326 -12.75674 -12.71402 -12.53314 -12.28296 -12.09974 -11.83185 -11.80536 -11.73417 -11.52582 -11.15001 -10.71644 -10.44835 -10.25439 -9.71599 -9.61101 -9.03039 -7.95416 -6.12456 0.50823 0.59013 1.43715 1.44332 1.51224 2.46552 2.85562 3.25849 3.36631 3.89379 4.01746 4.21584 4.25135 4.27321 4.34638 4.43773 4.46893 4.63931 4.66992 4.73720 4.79968 4.85351 4.90766 4.97767 5.05212 5.18654 5.20002 5.24362 5.24977 5.39729 5.49748 5.61969 5.64417 5.69441 5.71247 5.81811 5.83347 6.14260 6.20157 6.25843 6.33975 6.42615 6.54966 6.96791 7.54552 9.02328 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.041789 B = 0.004759 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.873249 B = 5881.619643 C = 5996.825220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.068 3.932 3 C -0.529 4.529 4 H 0.044 0.956 5 C 0.025 3.975 6 N -0.902 5.902 7 Si 0.944 3.056 8 H -0.276 1.276 9 H -0.285 1.285 10 H -0.276 1.276 11 C -0.097 4.097 12 C -0.112 4.112 13 C 0.067 3.933 14 N -0.533 5.533 15 C 0.092 3.908 16 C -0.082 4.082 17 C -0.116 4.116 18 C -0.128 4.128 19 C -0.128 4.128 20 C -0.126 4.126 21 C -0.126 4.126 22 C 0.084 3.916 23 H 0.009 0.991 24 H 0.048 0.952 25 H 0.034 0.966 26 H 0.257 0.743 27 H 0.061 0.939 28 H 0.016 0.984 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.022 0.978 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.122 0.878 40 H 0.055 0.945 41 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 -15.441 7.785 17.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.068 3.932 3 C -0.568 4.568 4 H 0.062 0.938 5 C -0.174 4.174 6 N -0.541 5.541 7 Si 0.770 3.230 8 H -0.202 1.202 9 H -0.211 1.211 10 H -0.201 1.201 11 C -0.136 4.136 12 C -0.150 4.150 13 C -0.061 4.061 14 N -0.257 5.257 15 C -0.035 4.035 16 C -0.083 4.083 17 C -0.135 4.135 18 C -0.145 4.145 19 C -0.146 4.146 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.043 4.043 23 H 0.028 0.972 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.138 0.862 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.140 0.860 40 H 0.073 0.927 41 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -0.822 -15.347 7.582 17.137 hybrid contribution 1.237 1.463 -0.151 1.922 sum 0.415 -13.884 7.431 15.753 Atomic orbital electron populations 1.21489 0.97697 0.97807 0.99146 1.18110 0.92861 0.91999 0.90276 1.21405 1.31241 0.97300 1.06849 0.93757 1.25515 0.95229 1.01360 0.95322 1.69966 1.37196 1.36146 1.10808 0.85845 0.78600 0.81246 0.77260 1.20162 1.21071 1.20099 1.21465 0.96811 0.93793 1.01487 1.21623 1.00646 0.96341 0.96382 1.22052 0.96033 0.97705 0.90303 1.61931 1.60145 1.01841 1.01802 1.21057 0.96978 0.92572 0.92928 1.19803 0.95590 0.94284 0.98599 1.21189 0.94422 0.98335 0.99510 1.21414 1.00572 0.92516 1.00047 1.21460 0.95546 0.99301 0.98261 1.21397 0.95711 0.97681 0.99601 1.21221 1.00523 0.92795 0.99893 1.22026 0.95308 0.87465 0.99500 0.97204 0.93344 0.94673 0.93324 0.92064 0.96537 0.92666 0.91824 0.95994 0.89944 0.94252 0.90206 0.86222 0.84345 0.83833 0.84066 0.85960 0.92665 0.97250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.15 7.81 71.98 0.56 -4.59 16 2 C 0.07 3.35 0.49 -52.88 -0.03 3.32 16 3 C -0.53 -28.92 8.02 25.60 0.21 -28.72 16 4 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 5 C 0.03 1.36 5.15 84.66 0.44 1.80 16 6 N -0.90 -50.72 9.39 21.45 0.20 -50.52 16 7 Si 0.94 43.60 29.54 68.60 2.03 45.63 16 8 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 9 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 C -0.10 -4.64 4.53 30.68 0.14 -4.51 16 12 C -0.11 -4.39 5.74 30.65 0.18 -4.21 16 13 C 0.07 2.31 5.16 86.33 0.45 2.76 16 14 N -0.53 -19.34 3.93 -900.93 -3.54 -22.88 16 15 C 0.09 2.75 5.12 85.56 0.44 3.19 16 16 C -0.08 -2.21 4.89 -19.87 -0.10 -2.31 16 17 C -0.12 -2.95 9.70 22.27 0.22 -2.73 16 18 C -0.13 -2.70 10.05 22.27 0.22 -2.47 16 19 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 20 C -0.13 -2.52 10.05 22.27 0.22 -2.29 16 21 C -0.13 -2.98 7.88 22.27 0.18 -2.81 16 22 C 0.08 3.60 4.12 86.32 0.36 3.95 16 23 H 0.01 0.44 8.14 -2.39 -0.02 0.43 16 24 H 0.05 2.64 6.07 -2.39 -0.01 2.63 16 25 H 0.03 1.62 6.01 -2.39 -0.01 1.61 16 26 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 27 H 0.06 3.28 6.16 -2.39 -0.01 3.27 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 2.26 6.58 -2.39 -0.02 2.24 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.08 2.55 5.75 -2.38 -0.01 2.54 16 33 H 0.04 1.13 8.07 -2.39 -0.02 1.11 16 34 H 0.08 2.32 7.93 -2.38 -0.02 2.30 16 35 H 0.12 2.99 8.06 -2.91 -0.02 2.96 16 36 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.12 2.69 7.95 -2.91 -0.02 2.67 16 40 H 0.05 2.35 8.02 -2.39 -0.02 2.33 16 41 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -58.93 314.45 3.37 -55.56 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.98 Total: 14.04 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 3.70 Total: -41.82 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: -3.34 Total: -73.40 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -58.93 3.37 -55.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261135398.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.053 kcal (2) G-P(sol) polarization free energy of solvation -58.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds