Wall clock time and date at job start Mon Mar 30 2020 06:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99741 * 2 1 4 4 C 1.38214 * 119.99771 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99991 * 359.97438 * 4 3 2 6 6 C 1.38213 * 120.00116 * 359.97438 * 5 4 3 7 7 C 1.50694 * 120.00065 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47328 * 90.00152 * 7 6 5 9 9 C 1.46897 * 111.00187 * 179.97438 * 8 7 6 10 10 H 1.08995 * 110.43645 * 327.53915 * 9 8 7 11 11 C 1.54272 * 110.48477 * 90.22506 * 9 8 7 12 12 C 1.53878 * 106.59843 * 142.28563 * 11 9 8 13 13 C 1.54261 * 106.59699 * 0.02562 * 12 11 9 14 14 H 1.09004 * 110.48805 * 95.06841 * 13 12 11 15 15 C 1.50705 * 110.60002 * 217.65312 * 13 12 11 16 16 H 1.07996 * 120.00178 * 114.83931 * 15 13 12 17 17 C 1.37880 * 120.00131 * 294.84321 * 15 13 12 18 18 N 1.31514 * 119.99562 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00064 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47216 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47049 * 120.00312 * 19 17 15 22 22 H 1.48500 * 109.47044 * 239.99740 * 19 17 15 23 23 C 1.54887 * 110.48656 * 204.99577 * 9 8 7 24 24 C 1.38209 * 119.99935 * 179.72199 * 2 1 3 25 25 H 1.09001 * 109.46953 * 89.99972 * 1 2 3 26 26 H 1.09000 * 109.47318 * 209.99570 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.00200 * 1 2 3 28 28 H 1.07997 * 120.00249 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.00085 * 180.02562 * 4 3 2 30 30 H 1.08001 * 119.99801 * 180.02562 * 5 4 3 31 31 H 1.09007 * 109.47266 * 209.99729 * 7 6 5 32 32 H 1.08997 * 109.47242 * 329.99656 * 7 6 5 33 33 H 1.00904 * 110.99528 * 303.95651 * 8 7 6 34 34 H 1.08998 * 110.03294 * 261.57414 * 11 9 8 35 35 H 1.08999 * 110.02974 * 23.00763 * 11 9 8 36 36 H 1.08994 * 110.02916 * 240.71690 * 12 11 9 37 37 H 1.09000 * 110.06881 * 119.30246 * 12 11 9 38 38 H 0.97003 * 119.99905 * 179.97438 * 18 17 15 39 39 H 1.09001 * 110.76186 * 321.69864 * 23 9 8 40 40 H 1.09007 * 110.75703 * 85.06405 * 23 9 8 41 41 H 1.07997 * 120.00050 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5807 -1.1970 0.0027 7 6 4.3342 -2.5020 0.0044 8 7 4.5785 -2.9246 1.3899 9 6 5.3122 -4.1965 1.4308 10 1 5.0391 -4.8209 0.5802 11 6 6.8336 -3.9418 1.4510 12 6 7.4439 -4.9993 2.3875 13 6 6.2723 -5.8601 2.9031 14 1 6.1568 -6.7540 2.2900 15 6 6.4858 -6.2363 4.3467 16 1 5.8136 -5.8658 5.1064 17 6 7.5395 -7.0535 4.6976 18 7 8.3578 -7.5050 3.7724 19 14 7.8046 -7.5192 6.4870 20 1 6.7538 -6.8866 7.3241 21 1 7.7292 -8.9953 6.6307 22 1 9.1413 -7.0466 6.9287 23 6 5.0340 -4.9403 2.7606 24 6 2.1981 -1.1969 0.0058 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6583 2.1327 -0.0004 29 1 4.1205 2.1327 0.0010 30 1 5.3518 0.0001 0.0024 31 1 3.7453 -3.2623 -0.5088 32 1 5.2868 -2.3723 -0.5092 33 1 5.0672 -2.2080 1.9056 34 1 7.2438 -4.0507 0.4471 35 1 7.0397 -2.9418 1.8326 36 1 7.9462 -4.5125 3.2234 37 1 8.1507 -5.6217 1.8386 38 1 9.0993 -8.0797 4.0192 39 1 4.9767 -4.2375 3.5918 40 1 4.1205 -5.5308 2.6892 41 1 1.6581 -2.1322 0.0099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295098450.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:25 Heat of formation + Delta-G solvation = -1.596002 kcal Electronic energy + Delta-G solvation = -18567.982054 eV Core-core repulsion = 15832.121270 eV Total energy + Delta-G solvation = -2735.860784 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.54182 -37.75656 -34.75572 -32.82322 -32.12338 -30.72214 -28.01101 -27.20656 -26.74733 -24.63975 -23.23750 -22.11294 -20.54200 -19.55576 -18.97958 -16.60467 -16.27908 -15.70945 -15.28486 -14.91583 -14.56398 -14.12053 -13.90342 -13.66960 -13.39444 -13.03115 -12.75429 -12.39388 -12.31919 -12.06927 -11.96175 -11.60056 -11.17059 -11.12518 -10.95621 -10.86530 -10.60186 -10.44067 -10.09907 -9.81861 -9.51419 -9.09638 -8.82356 -8.68655 -8.67474 -8.33818 -7.92626 -5.96300 -3.98181 1.28812 1.36133 3.32568 3.40647 3.45176 3.67464 4.47653 4.61640 4.71056 4.77324 4.93769 5.07730 5.22832 5.31650 5.35907 5.43036 5.45544 5.57033 5.61483 5.65382 5.76060 5.76698 5.91674 6.03564 6.08176 6.25499 6.40710 6.50961 6.51058 6.62669 6.70607 6.77455 6.88515 6.97326 7.07844 7.18179 7.38694 7.54370 7.73987 7.75505 7.95696 8.08130 8.53312 9.05740 9.65660 11.13682 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037913 B = 0.003440 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.360488 B = 8136.937776 C = 8377.683972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.126 4.126 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.071 4.071 7 C 0.095 3.905 8 N -0.677 5.677 9 C 0.080 3.920 10 H 0.071 0.929 11 C -0.152 4.152 12 C -0.095 4.095 13 C 0.046 3.954 14 H 0.029 0.971 15 C -0.509 4.509 16 H 0.056 0.944 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.099 4.099 24 C -0.098 4.098 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.339 0.661 34 H 0.043 0.957 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.258 0.742 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.583 15.218 -9.658 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.140 4.140 6 C -0.072 4.072 7 C -0.034 4.034 8 N -0.307 5.307 9 C -0.030 4.030 10 H 0.090 0.910 11 C -0.191 4.191 12 C -0.133 4.133 13 C 0.027 3.973 14 H 0.047 0.953 15 C -0.548 4.548 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.137 4.137 24 C -0.117 4.117 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.157 0.843 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.047 14.796 -9.615 20.818 hybrid contribution 1.335 0.057 0.674 1.496 sum -9.712 14.853 -8.941 19.871 Atomic orbital electron populations 1.20782 0.91351 1.02780 1.02102 1.19923 0.96001 0.93219 0.99936 1.20981 0.94260 0.97344 1.01849 1.21071 0.94296 0.97825 1.00467 1.21062 0.99745 0.92170 1.00996 1.19892 0.93911 0.94700 0.98651 1.20920 0.97679 0.93235 0.91542 1.60732 1.53065 1.05791 1.11141 1.22600 0.90971 0.89512 0.99875 0.91032 1.22939 0.96726 0.99858 0.99573 1.22033 0.99501 0.95269 0.96540 1.19466 0.88838 0.92762 0.96185 0.95272 1.21221 1.11626 1.29215 0.92717 0.92580 1.24998 0.96146 0.95945 0.97030 1.69986 1.16293 1.34463 1.32282 0.86600 0.77960 0.78152 0.85682 1.19767 1.21127 1.21166 1.22538 0.99212 0.97750 0.94196 1.20936 0.93560 0.97525 0.99684 0.91384 0.91418 0.91731 0.86469 0.86305 0.86394 0.90481 0.94636 0.84253 0.93823 0.93411 0.93150 0.92952 0.93253 0.92298 0.93365 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.01 0.36 -0.56 16 2 C -0.09 -0.97 5.88 -104.62 -0.62 -1.59 16 3 C -0.13 -1.28 9.70 -39.58 -0.38 -1.67 16 4 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 5 C -0.12 -1.40 9.70 -39.58 -0.38 -1.78 16 6 C -0.07 -0.89 5.39 -104.63 -0.56 -1.45 16 7 C 0.10 1.26 5.67 -4.98 -0.03 1.23 16 8 N -0.68 -10.49 6.35 -106.24 -0.67 -11.17 16 9 C 0.08 1.42 3.19 -66.05 -0.21 1.21 16 10 H 0.07 1.26 7.82 -51.93 -0.41 0.85 16 11 C -0.15 -2.82 6.50 -25.61 -0.17 -2.99 16 12 C -0.09 -2.21 5.60 -25.61 -0.14 -2.36 16 13 C 0.05 1.16 2.72 -90.10 -0.24 0.92 16 14 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.51 -14.16 8.37 -34.44 -0.29 -14.45 16 16 H 0.06 1.55 7.77 -52.49 -0.41 1.14 16 17 C 0.06 1.69 5.35 -17.82 -0.10 1.59 16 18 N -0.89 -25.95 12.63 55.43 0.70 -25.25 16 19 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.10 -2.09 5.96 -24.73 -0.15 -2.23 16 24 C -0.10 -1.18 9.36 -39.58 -0.37 -1.55 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 27 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.08 1.00 8.02 -51.93 -0.42 0.58 16 32 H 0.04 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.34 5.19 8.06 -39.29 -0.32 4.88 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.83 7.52 -51.93 -0.39 0.44 16 36 H 0.05 1.25 7.84 -51.93 -0.41 0.85 16 37 H 0.05 1.30 8.06 -51.93 -0.42 0.89 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.06 1.28 8.05 -51.93 -0.42 0.86 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 333.78 15.07 5.03 5.03 Total: -1.00 -28.98 333.78 -10.60 -39.58 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.96 Total: 2.57 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: -3.68 Total: -27.31 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.03 Total: -36.41 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.98 -10.60 -39.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295098450.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.986 kcal (2) G-P(sol) polarization free energy of solvation -28.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds