Wall clock time and date at job start Mon Mar 30 2020 06:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99741 * 2 1 4 4 C 1.38214 * 119.99771 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99991 * 359.97438 * 4 3 2 6 6 C 1.38213 * 120.00116 * 359.97438 * 5 4 3 7 7 C 1.50694 * 120.00065 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47328 * 90.00152 * 7 6 5 9 9 C 1.46897 * 111.00187 * 179.97438 * 8 7 6 10 10 H 1.08995 * 110.43645 * 327.53915 * 9 8 7 11 11 C 1.54272 * 110.48477 * 90.22506 * 9 8 7 12 12 C 1.53878 * 106.59843 * 142.28563 * 11 9 8 13 13 C 1.54261 * 106.59699 * 0.02562 * 12 11 9 14 14 H 1.09004 * 110.48805 * 95.06841 * 13 12 11 15 15 C 1.50705 * 110.60002 * 217.65312 * 13 12 11 16 16 H 1.07996 * 120.00178 * 114.83931 * 15 13 12 17 17 C 1.37880 * 120.00131 * 294.84321 * 15 13 12 18 18 N 1.31514 * 119.99562 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00064 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47216 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47049 * 120.00312 * 19 17 15 22 22 H 1.48500 * 109.47044 * 239.99740 * 19 17 15 23 23 C 1.54887 * 110.48656 * 204.99577 * 9 8 7 24 24 C 1.38209 * 119.99935 * 179.72199 * 2 1 3 25 25 H 1.09001 * 109.46953 * 89.99972 * 1 2 3 26 26 H 1.09000 * 109.47318 * 209.99570 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.00200 * 1 2 3 28 28 H 1.07997 * 120.00249 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.00085 * 180.02562 * 4 3 2 30 30 H 1.08001 * 119.99801 * 180.02562 * 5 4 3 31 31 H 1.09007 * 109.47266 * 209.99729 * 7 6 5 32 32 H 1.08997 * 109.47242 * 329.99656 * 7 6 5 33 33 H 1.00904 * 110.99528 * 303.95651 * 8 7 6 34 34 H 1.08998 * 110.03294 * 261.57414 * 11 9 8 35 35 H 1.08999 * 110.02974 * 23.00763 * 11 9 8 36 36 H 1.08994 * 110.02916 * 240.71690 * 12 11 9 37 37 H 1.09000 * 110.06881 * 119.30246 * 12 11 9 38 38 H 0.97003 * 119.99905 * 179.97438 * 18 17 15 39 39 H 1.09001 * 110.76186 * 321.69864 * 23 9 8 40 40 H 1.09007 * 110.75703 * 85.06405 * 23 9 8 41 41 H 1.07997 * 120.00050 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5807 -1.1970 0.0027 7 6 4.3342 -2.5020 0.0044 8 7 4.5785 -2.9246 1.3899 9 6 5.3122 -4.1965 1.4308 10 1 5.0391 -4.8209 0.5802 11 6 6.8336 -3.9418 1.4510 12 6 7.4439 -4.9993 2.3875 13 6 6.2723 -5.8601 2.9031 14 1 6.1568 -6.7540 2.2900 15 6 6.4858 -6.2363 4.3467 16 1 5.8136 -5.8658 5.1064 17 6 7.5395 -7.0535 4.6976 18 7 8.3578 -7.5050 3.7724 19 14 7.8046 -7.5192 6.4870 20 1 6.7538 -6.8866 7.3241 21 1 7.7292 -8.9953 6.6307 22 1 9.1413 -7.0466 6.9287 23 6 5.0340 -4.9403 2.7606 24 6 2.1981 -1.1969 0.0058 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6583 2.1327 -0.0004 29 1 4.1205 2.1327 0.0010 30 1 5.3518 0.0001 0.0024 31 1 3.7453 -3.2623 -0.5088 32 1 5.2868 -2.3723 -0.5092 33 1 5.0672 -2.2080 1.9056 34 1 7.2438 -4.0507 0.4471 35 1 7.0397 -2.9418 1.8326 36 1 7.9462 -4.5125 3.2234 37 1 8.1507 -5.6217 1.8386 38 1 9.0993 -8.0797 4.0192 39 1 4.9767 -4.2375 3.5918 40 1 4.1205 -5.5308 2.6892 41 1 1.6581 -2.1322 0.0099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295098450.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:25 Heat of formation + Delta-G solvation = -16.488875 kcal Electronic energy + Delta-G solvation = -18568.627857 eV Core-core repulsion = 15832.121270 eV Total energy + Delta-G solvation = -2736.506588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.41261 -39.29412 -36.14363 -34.34634 -33.30141 -31.88702 -29.81437 -28.54157 -27.67916 -26.16219 -24.86684 -22.93294 -21.50198 -21.04618 -20.86047 -18.35400 -17.44495 -16.84401 -16.61284 -16.31370 -16.04381 -15.49457 -15.14389 -14.53529 -14.42407 -14.28941 -14.03952 -13.85254 -13.47246 -13.38388 -13.07164 -12.93835 -12.72640 -12.66504 -12.36035 -12.30832 -12.04516 -11.80771 -11.65328 -11.58552 -11.36189 -10.94885 -10.74845 -10.48126 -9.68749 -9.51259 -9.18856 -8.11795 -6.20942 0.45701 0.53986 1.39528 1.41280 1.53183 2.43822 2.81878 3.18925 3.44839 3.84445 3.94297 4.03972 4.07061 4.13837 4.27727 4.30656 4.44229 4.53217 4.64884 4.69854 4.72544 4.85939 4.86578 4.89443 5.02592 5.03122 5.05502 5.17048 5.22945 5.24332 5.34882 5.43568 5.44787 5.60715 5.66407 5.71535 5.78045 5.92321 5.99181 6.15293 6.22141 6.41250 6.51423 6.90966 7.46417 8.97611 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037913 B = 0.003440 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.360488 B = 8136.937776 C = 8377.683972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.130 4.130 4 C -0.123 4.123 5 C -0.133 4.133 6 C -0.086 4.086 7 C 0.099 3.901 8 N -0.677 5.677 9 C 0.096 3.904 10 H 0.077 0.923 11 C -0.139 4.139 12 C -0.086 4.086 13 C 0.037 3.963 14 H -0.002 1.002 15 C -0.529 4.529 16 H 0.052 0.948 17 C 0.009 3.991 18 N -0.922 5.922 19 Si 0.953 3.047 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.281 1.281 23 C -0.090 4.090 24 C -0.116 4.116 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.126 0.874 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.342 0.658 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.259 0.741 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.528 17.108 -9.818 22.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.141 4.141 5 C -0.151 4.151 6 C -0.086 4.086 7 C -0.029 4.029 8 N -0.307 5.307 9 C -0.014 4.014 10 H 0.096 0.904 11 C -0.178 4.178 12 C -0.125 4.125 13 C 0.018 3.982 14 H 0.017 0.983 15 C -0.568 4.568 16 H 0.070 0.930 17 C -0.189 4.189 18 N -0.561 5.561 19 Si 0.779 3.221 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.129 4.129 24 C -0.135 4.135 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.144 0.856 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.161 0.839 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.006 16.701 -9.780 22.775 hybrid contribution 1.588 -0.504 0.703 1.808 sum -10.418 16.197 -9.077 21.290 Atomic orbital electron populations 1.20822 0.89690 1.03385 1.02996 1.20250 0.97395 0.93003 0.99225 1.21330 0.94456 0.98145 1.00874 1.21388 0.94705 0.98355 0.99612 1.21240 1.00310 0.92332 1.01230 1.19864 0.94162 0.94545 1.00070 1.20905 0.98163 0.93887 0.89938 1.60619 1.52275 1.04896 1.12936 1.22306 0.90512 0.90619 0.97997 0.90440 1.22822 0.96932 0.98870 0.99217 1.21817 0.98402 0.95852 0.96440 1.19456 0.91572 0.92700 0.94480 0.98344 1.21585 1.11658 1.29450 0.94062 0.93004 1.25786 0.95920 0.95965 1.01237 1.70106 1.16748 1.35023 1.34236 0.85577 0.77990 0.77886 0.80663 1.19083 1.20635 1.20644 1.22364 0.97294 0.97171 0.96032 1.21079 0.93652 0.98204 1.00516 0.90277 0.91521 0.90444 0.84171 0.84153 0.85650 0.90383 0.93986 0.83938 0.92093 0.91729 0.95366 0.95443 0.93180 0.92900 0.93337 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.01 71.24 0.71 -0.86 16 2 C -0.10 -1.92 5.88 -19.86 -0.12 -2.04 16 3 C -0.13 -2.31 9.70 22.27 0.22 -2.09 16 4 C -0.12 -2.26 10.05 22.27 0.22 -2.03 16 5 C -0.13 -2.81 9.70 22.27 0.22 -2.59 16 6 C -0.09 -2.02 5.39 -19.87 -0.11 -2.12 16 7 C 0.10 2.47 5.67 85.56 0.49 2.95 16 8 N -0.68 -19.92 6.35 -490.05 -3.11 -23.03 16 9 C 0.10 3.31 3.19 45.99 0.15 3.45 16 10 H 0.08 2.62 7.82 -2.39 -0.02 2.60 16 11 C -0.14 -5.03 6.50 31.32 0.20 -4.82 16 12 C -0.09 -4.12 5.60 31.32 0.18 -3.94 16 13 C 0.04 1.89 2.72 -10.46 -0.03 1.87 16 14 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 15 C -0.53 -30.05 8.37 25.60 0.21 -29.83 16 16 H 0.05 2.91 7.77 -2.91 -0.02 2.89 16 17 C 0.01 0.53 5.35 84.66 0.45 0.98 16 18 N -0.92 -54.88 12.63 21.45 0.27 -54.60 16 19 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 C -0.09 -3.82 5.96 31.89 0.19 -3.63 16 24 C -0.12 -2.63 9.36 22.27 0.21 -2.42 16 25 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.94 8.08 -2.39 -0.02 0.92 16 27 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 28 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 29 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.08 1.91 8.02 -2.38 -0.02 1.89 16 32 H 0.04 1.00 8.09 -2.39 -0.02 0.98 16 33 H 0.34 9.85 8.06 -89.69 -0.72 9.13 16 34 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 2.13 7.52 -2.39 -0.02 2.11 16 36 H 0.03 1.42 7.84 -2.39 -0.02 1.40 16 37 H 0.03 1.40 8.06 -2.39 -0.02 1.38 16 38 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.05 2.28 8.05 -2.39 -0.02 2.26 16 40 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -62.74 333.78 2.64 -60.10 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.26 Total: 17.99 kcal Atomic # 6 Polarization: -50.33 SS G_CDS: 3.19 Total: -47.14 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -2.84 Total: -77.63 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -62.74 2.64 -60.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295098450.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.610 kcal (2) G-P(sol) polarization free energy of solvation -62.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds