Wall clock time and date at job start Mon Mar 30 2020 07:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47417 * 2 1 4 4 C 1.52995 * 109.47417 * 179.97438 * 3 2 1 5 5 H 1.09003 * 115.54584 * 29.32996 * 4 3 2 6 6 C 1.52999 * 117.52109 * 243.62677 * 4 3 2 7 7 C 1.52998 * 117.49828 * 174.99651 * 4 3 2 8 8 H 1.09001 * 117.49577 * 215.02501 * 7 4 3 9 9 N 1.46898 * 117.49908 * 0.02562 * 7 4 3 10 10 C 1.46896 * 110.99813 * 204.99788 * 9 7 4 11 11 H 1.09000 * 109.47701 * 35.00295 * 10 9 7 12 12 C 1.50703 * 109.47439 * 275.00066 * 10 9 7 13 13 H 1.08002 * 119.99823 * 324.84518 * 12 10 9 14 14 C 1.37875 * 120.00292 * 144.84019 * 12 10 9 15 15 N 1.31519 * 119.99826 * 4.29549 * 14 12 10 16 16 Si 1.86799 * 120.00053 * 184.29229 * 14 12 10 17 17 H 1.48504 * 109.47177 * 90.00377 * 16 14 12 18 18 H 1.48501 * 109.47035 * 209.99990 * 16 14 12 19 19 H 1.48495 * 109.47150 * 330.00079 * 16 14 12 20 20 C 1.50701 * 109.47410 * 155.00019 * 10 9 7 21 21 C 1.38233 * 120.00516 * 224.91581 * 20 10 9 22 22 C 1.38236 * 120.00041 * 180.02562 * 21 20 10 23 23 C 1.38233 * 120.00099 * 359.97438 * 22 21 20 24 24 C 1.38240 * 120.00000 * 359.97438 * 23 22 21 25 25 C 1.38229 * 119.99925 * 0.05350 * 24 23 22 26 26 H 1.08996 * 109.47379 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47212 * 300.00461 * 1 2 3 28 28 H 1.09002 * 109.47219 * 59.99755 * 1 2 3 29 29 H 1.08995 * 109.47222 * 239.99834 * 2 1 3 30 30 H 1.09004 * 109.47445 * 119.99749 * 2 1 3 31 31 H 1.08995 * 109.47059 * 59.99735 * 3 2 1 32 32 H 1.09004 * 109.46608 * 300.00261 * 3 2 1 33 33 H 1.08997 * 117.49842 * 145.02315 * 6 4 3 34 34 H 1.09005 * 117.49249 * 0.02562 * 6 4 3 35 35 H 1.00898 * 110.99941 * 328.94961 * 9 7 4 36 36 H 0.97000 * 120.00108 * 179.97438 * 15 14 12 37 37 H 1.08001 * 119.99959 * 359.97438 * 21 20 10 38 38 H 1.07999 * 119.99884 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.00032 * 179.70874 * 23 22 21 40 40 H 1.07995 * 119.99941 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.00259 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0402 0.5850 -0.4808 6 6 4.2764 2.0454 1.2165 7 6 4.2765 2.7945 -0.1176 8 1 5.2114 2.8265 -0.6771 9 7 3.4339 3.9932 -0.2225 10 6 4.1501 5.0824 -0.8996 11 1 4.7980 4.6668 -1.6714 12 6 4.9843 5.8356 0.1045 13 1 4.6236 5.9704 1.1135 14 6 6.2079 6.3524 -0.2650 15 7 6.6098 6.2621 -1.5140 16 14 7.2949 7.1809 1.0084 17 1 8.1883 6.1702 1.6295 18 1 8.1155 8.2298 0.3516 19 1 6.4451 7.8011 2.0564 20 6 3.1551 6.0216 -1.5313 21 6 3.3562 6.4763 -2.8211 22 6 2.4437 7.3382 -3.4003 23 6 1.3299 7.7450 -2.6898 24 6 1.1282 7.2894 -1.4003 25 6 2.0410 6.4280 -0.8209 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 5.2114 1.5846 1.5351 34 1 3.6511 2.4419 2.0165 35 1 2.5654 3.7848 -0.6920 36 1 7.4705 6.6261 -1.7741 37 1 4.2266 6.1588 -3.3761 38 1 2.6010 7.6937 -4.4079 39 1 0.6195 8.4220 -3.1406 40 1 0.2583 7.6076 -0.8451 41 1 1.8837 6.0725 0.1867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300580938.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:56 Heat of formation + Delta-G solvation = 30.775351 kcal Electronic energy + Delta-G solvation = -19174.436373 eV Core-core repulsion = 16439.979316 eV Total energy + Delta-G solvation = -2734.457057 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.56781 -37.67575 -34.60987 -33.39601 -31.69631 -29.99660 -29.32274 -27.03211 -26.06609 -22.83168 -21.70583 -21.67728 -20.73034 -19.95554 -19.22600 -16.50510 -15.97938 -15.35913 -14.91889 -14.75547 -14.44592 -13.97337 -13.85477 -13.41386 -12.80036 -12.61999 -12.47271 -12.20955 -12.14869 -11.88061 -11.58928 -11.38808 -11.02106 -10.94637 -10.82228 -10.72408 -10.63632 -10.24963 -10.19614 -10.03448 -9.58390 -9.40782 -9.20797 -8.52992 -8.03898 -7.69107 -7.21018 -6.06031 -4.08685 2.29606 2.31765 3.30025 3.36304 3.40779 4.39183 4.41679 4.69201 4.92113 5.09174 5.15807 5.24640 5.28167 5.55071 5.66465 5.66745 5.75637 5.77299 5.84774 5.87918 5.94475 6.05484 6.14375 6.21963 6.27875 6.38816 6.43148 6.45378 6.45978 6.53373 6.66035 6.80336 6.89204 6.95502 7.24881 7.32394 7.38093 7.72339 7.85676 7.90799 8.15991 8.20172 8.67973 9.03038 9.54593 10.99099 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013351 B = 0.007223 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.725982 B = 3875.361933 C = 5441.528570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.082 4.082 4 C -0.183 4.183 5 H 0.093 0.907 6 C -0.169 4.169 7 C 0.058 3.942 8 H 0.095 0.905 9 N -0.653 5.653 10 C 0.237 3.763 11 H 0.043 0.957 12 C -0.480 4.480 13 H 0.063 0.937 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.273 1.273 20 C -0.037 4.037 21 C -0.109 4.109 22 C -0.131 4.131 23 C -0.152 4.152 24 C -0.134 4.134 25 C -0.112 4.112 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.318 0.682 36 H 0.262 0.738 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.799 -6.959 -0.264 11.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.120 4.120 4 C -0.203 4.203 5 H 0.111 0.889 6 C -0.208 4.208 7 C -0.053 4.053 8 H 0.113 0.887 9 N -0.283 5.283 10 C 0.130 3.870 11 H 0.061 0.939 12 C -0.519 4.519 13 H 0.081 0.919 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.198 1.198 20 C -0.039 4.039 21 C -0.128 4.128 22 C -0.149 4.149 23 C -0.170 4.170 24 C -0.152 4.152 25 C -0.130 4.130 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.137 0.863 36 H 0.071 0.929 37 H 0.137 0.863 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.488 -6.659 0.238 10.791 hybrid contribution 0.823 0.382 -0.244 0.939 sum -7.665 -6.277 -0.005 9.907 Atomic orbital electron populations 1.21783 0.96301 1.01056 1.01845 1.21499 0.95286 0.97358 1.01577 1.21018 0.92996 0.95943 1.02007 1.22705 0.94740 0.98130 1.04677 0.88907 1.23111 1.01223 1.03879 0.92578 1.22299 0.97391 0.86582 0.99060 0.88726 1.60541 1.05738 1.05192 1.56876 1.18476 0.88859 0.86492 0.93199 0.93923 1.20986 1.00987 1.33191 0.96727 0.91888 1.25008 0.97786 0.95965 0.95333 1.69917 1.21033 1.45907 1.15988 0.86524 0.80450 0.79074 0.81574 1.20656 1.21391 1.19779 1.20702 0.93134 0.97983 0.92053 1.21102 0.98266 0.97935 0.95506 1.20988 0.95425 0.99192 0.99310 1.20822 0.98554 1.02131 0.95531 1.20987 0.99511 0.99261 0.95473 1.20992 0.94444 0.97854 0.99755 0.93232 0.92791 0.92809 0.92460 0.92240 0.91507 0.92203 0.89997 0.88949 0.86310 0.92866 0.86301 0.87597 0.87779 0.87608 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.15 0.37 -1.17 16 2 C -0.12 -1.36 5.89 -26.73 -0.16 -1.51 16 3 C -0.08 -1.11 4.57 -26.73 -0.12 -1.24 16 4 C -0.18 -2.79 5.73 -90.62 -0.52 -3.31 16 5 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 6 C -0.17 -2.85 10.10 -26.73 -0.27 -3.12 16 7 C 0.06 1.11 6.07 -67.72 -0.41 0.70 16 8 H 0.10 2.01 7.60 -51.93 -0.39 1.61 16 9 N -0.65 -13.38 5.87 -102.18 -0.60 -13.98 16 10 C 0.24 5.64 2.25 -70.02 -0.16 5.48 16 11 H 0.04 1.13 6.60 -51.93 -0.34 0.79 16 12 C -0.48 -12.83 8.43 -34.44 -0.29 -13.12 16 13 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 14 C 0.06 1.67 5.45 -17.82 -0.10 1.57 16 15 N -0.89 -24.75 12.83 55.43 0.71 -24.04 16 16 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.04 -0.84 4.65 -104.62 -0.49 -1.32 16 21 C -0.11 -2.37 9.67 -39.58 -0.38 -2.76 16 22 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 23 C -0.15 -2.68 10.05 -39.58 -0.40 -3.07 16 24 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 25 C -0.11 -2.29 9.07 -39.58 -0.36 -2.65 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.95 7.87 -51.93 -0.41 0.54 16 32 H 0.06 0.84 7.33 -51.93 -0.38 0.46 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.09 1.58 8.03 -51.93 -0.42 1.16 16 35 H 0.32 6.04 6.45 -39.29 -0.25 5.78 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.12 2.69 8.00 -52.49 -0.42 2.27 16 38 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 39 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16 40 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.12 2.40 7.87 -52.48 -0.41 1.99 16 LS Contribution 338.51 15.07 5.10 5.10 Total: -1.00 -27.21 338.51 -10.69 -37.90 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.80 Total: 9.88 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -4.08 Total: -31.22 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.11 Total: -38.02 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.21 -10.69 -37.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300580938.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.678 kcal (2) G-P(sol) polarization free energy of solvation -27.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds