Wall clock time and date at job start Mon Mar 30 2020 07:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47417 * 2 1 4 4 C 1.52995 * 109.47417 * 179.97438 * 3 2 1 5 5 H 1.09003 * 115.54584 * 29.32996 * 4 3 2 6 6 C 1.52999 * 117.52109 * 243.62677 * 4 3 2 7 7 C 1.52998 * 117.49828 * 174.99651 * 4 3 2 8 8 H 1.09001 * 117.49577 * 215.02501 * 7 4 3 9 9 N 1.46898 * 117.49908 * 0.02562 * 7 4 3 10 10 C 1.46896 * 110.99813 * 204.99788 * 9 7 4 11 11 H 1.09000 * 109.47701 * 35.00295 * 10 9 7 12 12 C 1.50703 * 109.47439 * 275.00066 * 10 9 7 13 13 H 1.08002 * 119.99823 * 324.84518 * 12 10 9 14 14 C 1.37875 * 120.00292 * 144.84019 * 12 10 9 15 15 N 1.31519 * 119.99826 * 4.29549 * 14 12 10 16 16 Si 1.86799 * 120.00053 * 184.29229 * 14 12 10 17 17 H 1.48504 * 109.47177 * 90.00377 * 16 14 12 18 18 H 1.48501 * 109.47035 * 209.99990 * 16 14 12 19 19 H 1.48495 * 109.47150 * 330.00079 * 16 14 12 20 20 C 1.50701 * 109.47410 * 155.00019 * 10 9 7 21 21 C 1.38233 * 120.00516 * 224.91581 * 20 10 9 22 22 C 1.38236 * 120.00041 * 180.02562 * 21 20 10 23 23 C 1.38233 * 120.00099 * 359.97438 * 22 21 20 24 24 C 1.38240 * 120.00000 * 359.97438 * 23 22 21 25 25 C 1.38229 * 119.99925 * 0.05350 * 24 23 22 26 26 H 1.08996 * 109.47379 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47212 * 300.00461 * 1 2 3 28 28 H 1.09002 * 109.47219 * 59.99755 * 1 2 3 29 29 H 1.08995 * 109.47222 * 239.99834 * 2 1 3 30 30 H 1.09004 * 109.47445 * 119.99749 * 2 1 3 31 31 H 1.08995 * 109.47059 * 59.99735 * 3 2 1 32 32 H 1.09004 * 109.46608 * 300.00261 * 3 2 1 33 33 H 1.08997 * 117.49842 * 145.02315 * 6 4 3 34 34 H 1.09005 * 117.49249 * 0.02562 * 6 4 3 35 35 H 1.00898 * 110.99941 * 328.94961 * 9 7 4 36 36 H 0.97000 * 120.00108 * 179.97438 * 15 14 12 37 37 H 1.08001 * 119.99959 * 359.97438 * 21 20 10 38 38 H 1.07999 * 119.99884 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.00032 * 179.70874 * 23 22 21 40 40 H 1.07995 * 119.99941 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.00259 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0402 0.5850 -0.4808 6 6 4.2764 2.0454 1.2165 7 6 4.2765 2.7945 -0.1176 8 1 5.2114 2.8265 -0.6771 9 7 3.4339 3.9932 -0.2225 10 6 4.1501 5.0824 -0.8996 11 1 4.7980 4.6668 -1.6714 12 6 4.9843 5.8356 0.1045 13 1 4.6236 5.9704 1.1135 14 6 6.2079 6.3524 -0.2650 15 7 6.6098 6.2621 -1.5140 16 14 7.2949 7.1809 1.0084 17 1 8.1883 6.1702 1.6295 18 1 8.1155 8.2298 0.3516 19 1 6.4451 7.8011 2.0564 20 6 3.1551 6.0216 -1.5313 21 6 3.3562 6.4763 -2.8211 22 6 2.4437 7.3382 -3.4003 23 6 1.3299 7.7450 -2.6898 24 6 1.1282 7.2894 -1.4003 25 6 2.0410 6.4280 -0.8209 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 5.2114 1.5846 1.5351 34 1 3.6511 2.4419 2.0165 35 1 2.5654 3.7848 -0.6920 36 1 7.4705 6.6261 -1.7741 37 1 4.2266 6.1588 -3.3761 38 1 2.6010 7.6937 -4.4079 39 1 0.6195 8.4220 -3.1406 40 1 0.2583 7.6076 -0.8451 41 1 1.8837 6.0725 0.1867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300580938.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:56 Heat of formation + Delta-G solvation = 17.862470 kcal Electronic energy + Delta-G solvation = -19174.996318 eV Core-core repulsion = 16439.979316 eV Total energy + Delta-G solvation = -2735.017002 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.14048 -39.08266 -36.15307 -34.70602 -33.54549 -31.54132 -30.85623 -28.12713 -27.98956 -24.60291 -23.24218 -22.71542 -22.09825 -21.60553 -20.64044 -18.46992 -17.54801 -16.90827 -16.37403 -16.26731 -15.85423 -15.57722 -15.32485 -14.61338 -14.49037 -14.14202 -13.91533 -13.73966 -13.37736 -13.25914 -12.95546 -12.87249 -12.81751 -12.65501 -12.16855 -11.99539 -11.87303 -11.83910 -11.63337 -11.56807 -11.39927 -11.02522 -10.66914 -10.50618 -9.58354 -9.31346 -8.90751 -8.09860 -6.20732 0.73843 0.77030 1.38271 1.39025 1.48961 2.40485 3.00539 3.06704 3.26645 3.49560 3.81998 4.14518 4.26015 4.29671 4.31578 4.33972 4.43820 4.49463 4.56387 4.61838 4.71307 4.90112 4.91164 4.94303 4.99053 5.04428 5.09245 5.16300 5.22466 5.26162 5.39030 5.42576 5.46258 5.47460 5.58118 5.72543 5.79802 5.82158 6.10075 6.17685 6.37942 6.48030 6.92421 7.00320 7.45627 8.92372 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013351 B = 0.007223 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.725982 B = 3875.361933 C = 5441.528570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.080 4.080 4 C -0.149 4.149 5 H 0.109 0.891 6 C -0.163 4.163 7 C 0.019 3.981 8 H 0.062 0.938 9 N -0.646 5.646 10 C 0.247 3.753 11 H 0.002 0.998 12 C -0.490 4.490 13 H 0.049 0.951 14 C 0.015 3.985 15 N -0.918 5.918 16 Si 0.951 3.049 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.271 1.271 20 C -0.063 4.063 21 C -0.134 4.134 22 C -0.130 4.130 23 C -0.141 4.141 24 C -0.127 4.127 25 C -0.123 4.123 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.324 0.676 36 H 0.260 0.740 37 H 0.093 0.907 38 H 0.132 0.868 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.032 -6.845 0.147 12.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.117 4.117 4 C -0.168 4.168 5 H 0.127 0.873 6 C -0.202 4.202 7 C -0.092 4.092 8 H 0.080 0.920 9 N -0.277 5.277 10 C 0.139 3.861 11 H 0.020 0.980 12 C -0.529 4.529 13 H 0.067 0.933 14 C -0.184 4.184 15 N -0.557 5.557 16 Si 0.777 3.223 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.195 1.195 20 C -0.064 4.064 21 C -0.153 4.153 22 C -0.148 4.148 23 C -0.159 4.159 24 C -0.145 4.145 25 C -0.141 4.141 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.144 0.856 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.150 0.850 39 H 0.164 0.836 40 H 0.160 0.840 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.732 -6.559 0.658 12.595 hybrid contribution 1.435 0.324 -0.413 1.528 sum -9.297 -6.235 0.245 11.197 Atomic orbital electron populations 1.21768 0.95192 1.02072 1.01814 1.21459 0.96243 0.95376 1.02159 1.21029 0.91419 0.97785 1.01493 1.22790 0.95872 0.95772 1.02409 0.87320 1.23144 1.02003 1.03070 0.91947 1.22231 0.97224 0.88384 1.01366 0.91970 1.60441 1.05846 1.05261 1.56107 1.18145 0.89007 0.87308 0.91637 0.98008 1.21149 1.01835 1.33298 0.96595 0.93317 1.25673 0.99008 0.96815 0.96899 1.70043 1.21237 1.47081 1.17346 0.85661 0.78889 0.78233 0.79503 1.20193 1.21071 1.19519 1.20591 0.94212 0.98666 0.92950 1.21055 0.98731 0.99836 0.95654 1.21290 0.95017 0.97965 1.00565 1.21292 0.98217 1.01380 0.95033 1.21385 0.99628 0.97568 0.95896 1.21030 0.94544 0.98880 0.99646 0.91714 0.92782 0.92930 0.91881 0.91648 0.92045 0.92701 0.88978 0.89072 0.85616 0.93075 0.88892 0.85002 0.83580 0.83978 0.86639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.91 71.98 0.71 -1.99 16 2 C -0.11 -2.35 5.89 30.59 0.18 -2.17 16 3 C -0.08 -2.07 4.57 30.59 0.14 -1.93 16 4 C -0.15 -4.48 5.73 -10.80 -0.06 -4.54 16 5 H 0.11 2.95 8.07 -2.39 -0.02 2.93 16 6 C -0.16 -5.48 10.10 30.59 0.31 -5.18 16 7 C 0.02 0.76 6.07 44.91 0.27 1.04 16 8 H 0.06 2.87 7.60 -2.39 -0.02 2.85 16 9 N -0.65 -27.67 5.87 -477.19 -2.80 -30.47 16 10 C 0.25 12.46 2.25 43.43 0.10 12.56 16 11 H 0.00 0.12 6.60 -2.39 -0.02 0.10 16 12 C -0.49 -27.32 8.43 25.60 0.22 -27.11 16 13 H 0.05 2.79 7.82 -2.91 -0.02 2.76 16 14 C 0.02 0.86 5.45 84.65 0.46 1.32 16 15 N -0.92 -53.48 12.83 21.45 0.28 -53.20 16 16 Si 0.95 44.94 29.54 68.60 2.03 46.96 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 18 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 20 C -0.06 -2.91 4.65 -19.86 -0.09 -3.00 16 21 C -0.13 -5.98 9.67 22.27 0.22 -5.77 16 22 C -0.13 -4.71 10.05 22.27 0.22 -4.49 16 23 C -0.14 -4.46 10.05 22.27 0.22 -4.23 16 24 C -0.13 -4.21 10.05 22.27 0.22 -3.99 16 25 C -0.12 -4.96 9.07 22.27 0.20 -4.76 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.68 7.87 -2.39 -0.02 1.66 16 32 H 0.05 1.50 7.33 -2.39 -0.02 1.48 16 33 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.09 3.09 8.03 -2.38 -0.02 3.07 16 35 H 0.32 12.75 6.45 -89.70 -0.58 12.18 16 36 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 37 H 0.09 4.53 8.00 -2.91 -0.02 4.51 16 38 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 39 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 40 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 41 H 0.12 4.66 7.87 -2.91 -0.02 4.64 16 Total: -1.00 -61.44 338.51 3.23 -58.20 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.41 Total: 32.74 kcal Atomic # 6 Polarization: -57.55 SS G_CDS: 3.33 Total: -54.23 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -2.53 Total: -83.68 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -61.44 3.23 -58.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300580938.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.065 kcal (2) G-P(sol) polarization free energy of solvation -61.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds