Wall clock time and date at job start Mon Mar 30 2020 07:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47059 * 2 1 4 4 H 1.09001 * 109.47004 * 56.39848 * 3 2 1 5 5 C 1.50702 * 109.46749 * 176.39564 * 3 2 1 6 6 H 1.07994 * 120.00001 * 120.00484 * 5 3 2 7 7 C 1.37876 * 120.00077 * 299.99726 * 5 3 2 8 8 N 1.31516 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00211 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46794 * 60.00044 * 9 7 5 11 11 H 1.48493 * 109.47378 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46970 * 300.00743 * 9 7 5 13 13 N 1.46897 * 109.47491 * 296.39542 * 3 2 1 14 14 C 1.46429 * 110.99971 * 300.37742 * 13 3 2 15 15 C 1.53382 * 108.65637 * 181.14089 * 14 13 3 16 16 C 1.53046 * 107.91573 * 68.27831 * 15 14 13 17 17 H 1.08998 * 109.44033 * 72.74747 * 16 15 14 18 18 C 1.53005 * 109.44332 * 192.63978 * 16 15 14 19 19 C 1.50805 * 109.65004 * 312.69632 * 16 15 14 20 20 C 1.38621 * 118.11692 * 195.46744 * 19 16 15 21 21 C 1.38056 * 120.48456 * 180.24246 * 20 19 16 22 22 C 1.38309 * 119.88679 * 0.04265 * 21 20 19 23 23 C 1.37812 * 119.95695 * 359.86304 * 22 21 20 24 24 C 1.38366 * 122.01765 * 15.51302 * 19 16 15 25 25 H 1.09003 * 109.47325 * 305.07339 * 1 2 3 26 26 H 1.09005 * 109.46860 * 65.07181 * 1 2 3 27 27 H 1.08996 * 109.47404 * 185.07235 * 1 2 3 28 28 H 1.08999 * 109.47041 * 239.99909 * 2 1 3 29 29 H 1.09003 * 109.47052 * 120.00093 * 2 1 3 30 30 H 0.97002 * 120.00379 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.60737 * 61.38932 * 14 13 3 32 32 H 1.09001 * 109.74132 * 300.97600 * 14 13 3 33 33 H 1.09001 * 109.77164 * 308.67587 * 15 14 13 34 34 H 1.09002 * 109.77370 * 187.88361 * 15 14 13 35 35 H 1.08994 * 109.46991 * 59.99641 * 18 16 15 36 36 H 1.08997 * 109.46881 * 180.02562 * 18 16 15 37 37 H 1.09000 * 109.46413 * 300.00032 * 18 16 15 38 38 H 1.07993 * 119.75777 * 0.25746 * 20 19 16 39 39 H 1.07996 * 120.05464 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.02409 * 179.84219 * 22 21 20 41 41 H 1.07998 * 119.78892 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6249 1.9746 0.8560 5 6 3.5443 1.4434 0.0893 6 1 4.1317 1.8943 -0.6968 7 6 4.1708 0.8686 1.1747 8 7 3.4556 0.3191 2.1319 9 14 6.0355 0.8702 1.2858 10 1 6.5301 2.2705 1.2862 11 1 6.4574 0.1955 2.5396 12 1 6.6015 0.1458 0.1196 13 7 1.6227 2.1095 -1.2405 14 6 2.1558 1.4153 -2.4144 15 6 1.7131 2.1703 -3.6740 16 6 2.4369 3.5186 -3.6936 17 1 3.4874 3.3628 -3.9389 18 6 1.7974 4.4247 -4.7477 19 6 2.3294 4.1715 -2.3385 20 6 2.6286 5.5214 -2.2381 21 6 2.5512 6.1673 -1.0204 22 6 2.1736 5.4648 0.1095 23 6 1.8727 4.1231 0.0172 24 6 1.9462 3.4652 -1.2121 25 1 -0.3634 0.5905 0.8411 26 1 -0.3633 0.4332 -0.9320 27 1 -0.3634 -1.0236 0.0909 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8964 -0.0856 2.8954 31 1 1.7693 0.3966 -2.4438 32 1 3.2445 1.3921 -2.3656 33 1 0.6353 2.3307 -3.6480 34 1 1.9797 1.5957 -4.5611 35 1 0.7464 4.5797 -4.5042 36 1 2.3129 5.3849 -4.7623 37 1 1.8778 3.9546 -5.7278 38 1 2.9241 6.0718 -3.1190 39 1 2.7854 7.2192 -0.9503 40 1 2.1148 5.9672 1.0637 41 1 1.5777 3.5773 0.9012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310168001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:21 Heat of formation + Delta-G solvation = 19.758597 kcal Electronic energy + Delta-G solvation = -20479.358301 eV Core-core repulsion = 17744.423522 eV Total energy + Delta-G solvation = -2734.934779 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.01886 -36.57224 -35.31334 -32.81094 -31.37023 -29.71727 -29.14868 -27.88094 -25.99848 -23.10371 -22.91656 -22.56197 -21.18211 -19.00370 -18.78587 -16.61930 -16.34390 -15.52061 -15.07204 -14.53289 -13.95690 -13.65226 -13.43259 -13.15074 -13.03841 -12.79328 -12.33439 -12.07799 -11.87730 -11.76105 -11.52049 -11.26601 -11.24439 -10.95649 -10.91889 -10.71826 -10.53849 -10.22372 -10.08625 -9.83967 -9.75205 -9.59314 -9.24969 -8.59758 -8.40010 -8.02185 -6.72529 -6.04050 -4.18183 2.11955 2.24344 3.26505 3.31134 3.35184 4.34876 4.45126 4.94687 5.12686 5.17588 5.19583 5.39089 5.58923 5.67469 5.76055 5.86072 5.94438 5.98109 6.01971 6.16405 6.21900 6.28285 6.33161 6.43040 6.47309 6.52253 6.54588 6.62385 6.66309 6.78493 6.97324 7.03195 7.09372 7.15713 7.22742 7.28376 7.53066 7.64313 7.72208 7.91055 8.01673 8.29495 8.43192 8.87699 9.48691 10.93980 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.017301 B = 0.008650 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.970429 B = 3236.125963 C = 3713.301406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.215 3.785 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.056 0.944 7 C 0.071 3.929 8 N -0.886 5.886 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.492 5.492 14 C 0.062 3.938 15 C -0.119 4.119 16 C -0.044 4.044 17 H 0.070 0.930 18 C -0.139 4.139 19 C -0.143 4.143 20 C -0.098 4.098 21 C -0.175 4.175 22 C -0.102 4.102 23 C -0.143 4.143 24 C 0.174 3.826 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.029 0.971 28 H 0.036 0.964 29 H 0.098 0.902 30 H 0.263 0.737 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.270 5.345 -8.400 10.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C 0.111 3.889 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.074 0.926 7 C -0.132 4.132 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.203 5.203 14 C -0.064 4.064 15 C -0.156 4.156 16 C -0.062 4.062 17 H 0.089 0.911 18 C -0.196 4.196 19 C -0.146 4.146 20 C -0.117 4.117 21 C -0.194 4.194 22 C -0.121 4.121 23 C -0.163 4.163 24 C 0.073 3.927 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.770 5.072 -8.242 10.386 hybrid contribution 1.859 0.054 0.278 1.880 sum -1.911 5.126 -7.964 9.662 Atomic orbital electron populations 1.21732 0.98674 0.98758 1.00579 1.21706 0.92351 0.98898 1.02586 1.19599 0.93631 0.90860 0.84792 0.93055 1.21568 0.91751 1.37837 1.06390 0.92584 1.24847 0.98048 0.94843 0.95424 1.69844 1.35115 1.37755 1.09667 0.86699 0.85949 0.78361 0.77349 1.20207 1.21188 1.20310 1.58489 1.55476 1.00055 1.06287 1.21997 0.99054 0.97348 0.88038 1.21824 1.00622 0.95418 0.97785 1.19962 0.99527 0.94696 0.92062 0.91132 1.21847 1.00903 0.99154 0.97713 1.19346 1.06581 0.94424 0.94258 1.20743 1.00196 0.93723 0.97020 1.20706 1.06373 0.99108 0.93254 1.20817 0.99289 0.94263 0.97695 1.21223 1.03646 0.94420 0.97032 1.18585 0.91461 0.90262 0.92416 0.93965 0.93714 0.95221 0.94496 0.88406 0.92698 0.90476 0.92754 0.91383 0.91761 0.92683 0.92771 0.93061 0.87290 0.87540 0.87174 0.85411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.72 37.16 0.36 -2.39 16 2 C -0.12 -2.65 4.97 -26.73 -0.13 -2.79 16 3 C 0.21 5.08 1.36 -68.87 -0.09 4.99 16 4 H 0.05 1.34 5.72 -51.93 -0.30 1.04 16 5 C -0.54 -13.98 7.02 -34.44 -0.24 -14.23 16 6 H 0.06 1.52 6.54 -52.49 -0.34 1.18 16 7 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 8 N -0.89 -24.11 11.30 55.43 0.63 -23.48 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 N -0.49 -10.36 4.00 -165.06 -0.66 -11.02 16 14 C 0.06 1.19 4.77 -3.88 -0.02 1.17 16 15 C -0.12 -1.86 5.50 -26.51 -0.15 -2.01 16 16 C -0.04 -0.69 2.86 -91.69 -0.26 -0.95 16 17 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 18 C -0.14 -1.77 8.74 37.16 0.32 -1.44 16 19 C -0.14 -2.64 5.41 -104.38 -0.56 -3.20 16 20 C -0.10 -1.66 9.07 -39.51 -0.36 -2.02 16 21 C -0.17 -2.96 10.05 -39.62 -0.40 -3.35 16 22 C -0.10 -1.87 10.03 -39.71 -0.40 -2.27 16 23 C -0.14 -2.99 8.78 -39.22 -0.34 -3.33 16 24 C 0.17 3.63 5.09 -83.85 -0.43 3.21 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.84 7.86 -51.93 -0.41 0.43 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.82 6.24 -51.93 -0.32 0.49 16 29 H 0.10 2.48 5.98 -51.93 -0.31 2.17 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.08 1.44 6.29 -51.93 -0.33 1.11 16 32 H 0.05 1.15 6.44 -51.93 -0.33 0.81 16 33 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.64 6.52 -51.93 -0.34 0.30 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.11 1.56 6.50 -52.49 -0.34 1.22 16 39 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 40 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.13 2.83 5.78 -52.49 -0.30 2.53 16 LS Contribution 310.06 15.07 4.67 4.67 Total: -1.00 -26.86 310.06 -9.44 -36.30 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.26 Total: 4.32 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -2.79 Total: -26.82 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: -0.03 Total: -34.50 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.86 -9.44 -36.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310168001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.054 kcal (2) G-P(sol) polarization free energy of solvation -26.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds