Wall clock time and date at job start Mon Mar 30 2020 07:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47059 * 2 1 4 4 H 1.09001 * 109.47004 * 56.39848 * 3 2 1 5 5 C 1.50702 * 109.46749 * 176.39564 * 3 2 1 6 6 H 1.07994 * 120.00001 * 120.00484 * 5 3 2 7 7 C 1.37876 * 120.00077 * 299.99726 * 5 3 2 8 8 N 1.31516 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00211 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46794 * 60.00044 * 9 7 5 11 11 H 1.48493 * 109.47378 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46970 * 300.00743 * 9 7 5 13 13 N 1.46897 * 109.47491 * 296.39542 * 3 2 1 14 14 C 1.46429 * 110.99971 * 300.37742 * 13 3 2 15 15 C 1.53382 * 108.65637 * 181.14089 * 14 13 3 16 16 C 1.53046 * 107.91573 * 68.27831 * 15 14 13 17 17 H 1.08998 * 109.44033 * 72.74747 * 16 15 14 18 18 C 1.53005 * 109.44332 * 192.63978 * 16 15 14 19 19 C 1.50805 * 109.65004 * 312.69632 * 16 15 14 20 20 C 1.38621 * 118.11692 * 195.46744 * 19 16 15 21 21 C 1.38056 * 120.48456 * 180.24246 * 20 19 16 22 22 C 1.38309 * 119.88679 * 0.04265 * 21 20 19 23 23 C 1.37812 * 119.95695 * 359.86304 * 22 21 20 24 24 C 1.38366 * 122.01765 * 15.51302 * 19 16 15 25 25 H 1.09003 * 109.47325 * 305.07339 * 1 2 3 26 26 H 1.09005 * 109.46860 * 65.07181 * 1 2 3 27 27 H 1.08996 * 109.47404 * 185.07235 * 1 2 3 28 28 H 1.08999 * 109.47041 * 239.99909 * 2 1 3 29 29 H 1.09003 * 109.47052 * 120.00093 * 2 1 3 30 30 H 0.97002 * 120.00379 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.60737 * 61.38932 * 14 13 3 32 32 H 1.09001 * 109.74132 * 300.97600 * 14 13 3 33 33 H 1.09001 * 109.77164 * 308.67587 * 15 14 13 34 34 H 1.09002 * 109.77370 * 187.88361 * 15 14 13 35 35 H 1.08994 * 109.46991 * 59.99641 * 18 16 15 36 36 H 1.08997 * 109.46881 * 180.02562 * 18 16 15 37 37 H 1.09000 * 109.46413 * 300.00032 * 18 16 15 38 38 H 1.07993 * 119.75777 * 0.25746 * 20 19 16 39 39 H 1.07996 * 120.05464 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.02409 * 179.84219 * 22 21 20 41 41 H 1.07998 * 119.78892 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6249 1.9746 0.8560 5 6 3.5443 1.4434 0.0893 6 1 4.1317 1.8943 -0.6968 7 6 4.1708 0.8686 1.1747 8 7 3.4556 0.3191 2.1319 9 14 6.0355 0.8702 1.2858 10 1 6.5301 2.2705 1.2862 11 1 6.4574 0.1955 2.5396 12 1 6.6015 0.1458 0.1196 13 7 1.6227 2.1095 -1.2405 14 6 2.1558 1.4153 -2.4144 15 6 1.7131 2.1703 -3.6740 16 6 2.4369 3.5186 -3.6936 17 1 3.4874 3.3628 -3.9389 18 6 1.7974 4.4247 -4.7477 19 6 2.3294 4.1715 -2.3385 20 6 2.6286 5.5214 -2.2381 21 6 2.5512 6.1673 -1.0204 22 6 2.1736 5.4648 0.1095 23 6 1.8727 4.1231 0.0172 24 6 1.9462 3.4652 -1.2121 25 1 -0.3634 0.5905 0.8411 26 1 -0.3633 0.4332 -0.9320 27 1 -0.3634 -1.0236 0.0909 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8964 -0.0856 2.8954 31 1 1.7693 0.3966 -2.4438 32 1 3.2445 1.3921 -2.3656 33 1 0.6353 2.3307 -3.6480 34 1 1.9797 1.5957 -4.5611 35 1 0.7464 4.5797 -4.5042 36 1 2.3129 5.3849 -4.7623 37 1 1.8778 3.9546 -5.7278 38 1 2.9241 6.0718 -3.1190 39 1 2.7854 7.2192 -0.9503 40 1 2.1148 5.9672 1.0637 41 1 1.5777 3.5773 0.9012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310168001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:21 Heat of formation + Delta-G solvation = 7.027261 kcal Electronic energy + Delta-G solvation = -20479.910373 eV Core-core repulsion = 17744.423522 eV Total energy + Delta-G solvation = -2735.486852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50467 -38.15651 -36.69203 -34.62237 -33.16227 -31.12772 -30.53718 -29.45021 -27.69565 -24.90873 -24.30529 -23.94986 -22.71821 -20.68895 -20.21818 -18.45672 -17.96569 -16.99884 -16.70643 -16.21428 -15.52262 -15.12475 -14.91032 -14.75880 -14.45358 -14.35114 -13.78102 -13.60001 -13.38284 -13.22527 -13.08033 -12.83053 -12.73972 -12.63984 -12.48164 -12.29740 -12.06084 -11.84263 -11.70428 -11.58658 -11.38567 -11.04841 -10.98040 -10.41320 -10.28051 -9.44958 -8.41540 -7.97815 -6.27443 0.67379 0.77820 1.34630 1.36136 1.42980 2.37334 2.95987 3.12724 3.42832 3.86411 3.93168 4.14076 4.19262 4.33384 4.48022 4.55837 4.62526 4.65577 4.71188 4.74369 4.80767 4.83198 4.84959 4.94320 5.06510 5.12547 5.19323 5.23415 5.30998 5.34438 5.38651 5.43695 5.48522 5.56754 5.62755 5.71415 5.78408 5.85864 6.02871 6.15569 6.20274 6.42770 6.83028 6.88878 7.41262 8.88378 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.017301 B = 0.008650 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.970429 B = 3236.125963 C = 3713.301406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.112 4.112 3 C 0.224 3.776 4 H 0.020 0.980 5 C -0.538 4.538 6 H 0.041 0.959 7 C 0.027 3.973 8 N -0.908 5.908 9 Si 0.941 3.059 10 H -0.280 1.280 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.493 5.493 14 C 0.061 3.939 15 C -0.109 4.109 16 C -0.046 4.046 17 H 0.072 0.928 18 C -0.131 4.131 19 C -0.150 4.150 20 C -0.098 4.098 21 C -0.169 4.169 22 C -0.111 4.111 23 C -0.172 4.172 24 C 0.141 3.859 25 H 0.032 0.968 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.263 0.737 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.127 0.873 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.958 6.760 -10.771 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.150 4.150 3 C 0.119 3.881 4 H 0.038 0.962 5 C -0.577 4.577 6 H 0.059 0.941 7 C -0.173 4.173 8 N -0.547 5.547 9 Si 0.768 3.232 10 H -0.206 1.206 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.204 5.204 14 C -0.065 4.065 15 C -0.147 4.147 16 C -0.064 4.064 17 H 0.090 0.910 18 C -0.188 4.188 19 C -0.153 4.153 20 C -0.116 4.116 21 C -0.188 4.188 22 C -0.129 4.129 23 C -0.193 4.193 24 C 0.041 3.959 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.145 0.855 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.461 6.501 -10.625 12.928 hybrid contribution 1.773 -0.296 1.014 2.064 sum -1.688 6.204 -9.611 11.564 Atomic orbital electron populations 1.21588 0.96240 1.00015 1.00628 1.21549 0.94493 0.97870 1.01105 1.19288 0.92133 0.91211 0.85438 0.96234 1.21699 0.93110 1.37112 1.05774 0.94113 1.25483 1.01545 0.94932 0.95368 1.69960 1.36279 1.38458 1.09999 0.85870 0.81846 0.77976 0.77542 1.20605 1.20578 1.19797 1.58478 1.55892 1.00450 1.05618 1.22035 0.97356 0.97917 0.89190 1.21796 1.00563 0.95535 0.96776 1.20060 0.99917 0.95036 0.91431 0.91029 1.21784 1.00346 0.99156 0.97487 1.19795 1.05323 0.95322 0.94842 1.21182 0.98870 0.93212 0.98339 1.21140 1.04432 1.00684 0.92505 1.21085 0.99014 0.93396 0.99447 1.21199 1.05811 0.95809 0.96499 1.18841 0.93437 0.90180 0.93441 0.94857 0.92826 0.93090 0.94361 0.91299 0.92792 0.90563 0.95404 0.91315 0.88853 0.93088 0.91490 0.90851 0.83848 0.84028 0.85496 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 9.72 71.98 0.70 -4.34 16 2 C -0.11 -5.24 4.97 30.59 0.15 -5.09 16 3 C 0.22 11.11 1.36 44.17 0.06 11.17 16 4 H 0.02 1.11 5.72 -2.39 -0.01 1.09 16 5 C -0.54 -29.14 7.02 25.60 0.18 -28.96 16 6 H 0.04 2.29 6.54 -2.91 -0.02 2.27 16 7 C 0.03 1.47 5.30 84.65 0.45 1.92 16 8 N -0.91 -51.23 11.30 21.45 0.24 -50.98 16 9 Si 0.94 44.01 29.54 68.60 2.03 46.04 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 13 N -0.49 -21.31 4.00 -676.12 -2.71 -24.01 16 14 C 0.06 2.35 4.77 86.52 0.41 2.77 16 15 C -0.11 -3.21 5.50 30.74 0.17 -3.04 16 16 C -0.05 -1.33 2.86 -11.49 -0.03 -1.36 16 17 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 18 C -0.13 -2.79 8.74 71.98 0.63 -2.16 16 19 C -0.15 -5.32 5.41 -19.71 -0.11 -5.42 16 20 C -0.10 -3.02 9.07 22.32 0.20 -2.81 16 21 C -0.17 -5.25 10.05 22.24 0.22 -5.03 16 22 C -0.11 -4.03 10.03 22.19 0.22 -3.80 16 23 C -0.17 -7.50 8.78 22.50 0.20 -7.31 16 24 C 0.14 5.99 5.09 38.30 0.19 6.19 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 2.01 7.86 -2.38 -0.02 1.99 16 27 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.04 1.73 6.24 -2.39 -0.01 1.72 16 29 H 0.07 3.64 5.98 -2.39 -0.01 3.63 16 30 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.08 2.86 6.29 -2.39 -0.02 2.84 16 32 H 0.03 1.20 6.44 -2.39 -0.02 1.18 16 33 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16 34 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.26 6.52 -2.39 -0.02 1.24 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.14 3.42 6.50 -2.91 -0.02 3.40 16 39 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 41 H 0.10 4.75 5.78 -2.91 -0.02 4.74 16 Total: -1.00 -60.11 310.06 4.22 -55.89 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 1.01 Total: 20.35 kcal Atomic # 6 Polarization: -50.92 SS G_CDS: 3.65 Total: -47.27 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -2.47 Total: -75.00 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -60.11 4.22 -55.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310168001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.916 kcal (2) G-P(sol) polarization free energy of solvation -60.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds