Wall clock time and date at job start Mon Mar 30 2020 07:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99829 * 2 1 4 4 C 1.52997 * 109.47241 * 125.00042 * 3 2 1 5 5 C 1.53007 * 109.47309 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47034 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.46756 * 179.97438 * 6 5 4 8 8 C 1.46897 * 110.99701 * 180.02562 * 7 6 5 9 9 H 1.09007 * 109.47127 * 324.99583 * 8 7 6 10 10 C 1.50696 * 109.47661 * 84.99930 * 8 7 6 11 11 H 1.07992 * 120.00327 * 234.80216 * 10 8 7 12 12 C 1.37880 * 119.99741 * 54.79229 * 10 8 7 13 13 N 1.31520 * 120.00156 * 2.53118 * 12 10 8 14 14 Si 1.86802 * 120.00014 * 182.52785 * 12 10 8 15 15 H 1.48497 * 109.47159 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47179 * 120.00359 * 14 12 10 17 17 H 1.48503 * 109.46817 * 240.00337 * 14 12 10 18 18 C 1.50700 * 109.46942 * 205.00344 * 8 7 6 19 19 C 1.38237 * 119.99923 * 330.49637 * 18 8 7 20 20 C 1.38230 * 120.00034 * 180.02562 * 19 18 8 21 21 C 1.38230 * 120.00382 * 359.96129 * 20 19 18 22 22 C 1.38240 * 119.99864 * 359.97438 * 21 20 19 23 23 C 1.38234 * 120.00155 * 150.48344 * 18 8 7 24 24 H 1.08002 * 120.00252 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.00008 * 180.02562 * 1 2 3 26 26 H 1.07997 * 119.99822 * 180.02562 * 2 1 3 27 27 H 1.09008 * 109.47115 * 5.00181 * 3 2 1 28 28 H 1.08996 * 109.47115 * 245.00194 * 3 2 1 29 29 H 1.08995 * 109.47106 * 59.99880 * 4 3 2 30 30 H 1.09000 * 109.47390 * 299.99627 * 4 3 2 31 31 H 1.09002 * 109.46767 * 59.99842 * 5 4 3 32 32 H 1.09000 * 109.46595 * 300.00120 * 5 4 3 33 33 H 1.09001 * 109.46758 * 59.99889 * 6 5 4 34 34 H 1.09001 * 109.46981 * 299.99987 * 6 5 4 35 35 H 1.00896 * 111.00051 * 303.95373 * 7 6 5 36 36 H 0.96999 * 119.99883 * 179.97438 * 13 12 10 37 37 H 1.08002 * 119.99728 * 359.97438 * 19 18 8 38 38 H 1.08004 * 120.00107 * 179.97438 * 20 19 18 39 39 H 1.07995 * 120.00370 * 179.72251 * 21 20 19 40 40 H 1.07994 * 120.00362 * 179.97438 * 22 21 20 41 41 H 1.07992 * 120.00262 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6580 1.1812 6 6 4.7716 2.6862 2.3632 7 7 5.5069 3.9579 2.3625 8 6 6.4514 4.0205 3.4859 9 1 6.0233 3.5111 4.3493 10 6 7.7422 3.3483 3.0951 11 1 8.1416 2.5507 3.7038 12 6 8.4134 3.7516 1.9601 13 7 7.9535 4.7557 1.2460 14 14 9.9759 2.8718 1.4368 15 1 10.2795 1.7855 2.4027 16 1 9.7879 2.2924 0.0825 17 1 11.1029 3.8385 1.4096 18 6 6.7211 5.4613 3.8356 19 6 6.6512 6.4350 2.8568 20 6 6.8991 7.7565 3.1775 21 6 7.2161 8.1047 4.4771 22 6 7.2847 7.1312 5.4563 23 6 7.0381 5.8094 5.1353 24 1 -0.5401 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4026 -0.9314 29 1 3.7399 0.5067 1.0920 30 1 2.4773 1.2357 2.1130 31 1 3.0958 3.4847 1.2705 32 1 4.3583 2.7550 0.2498 33 1 5.4762 1.8594 2.2743 34 1 4.2134 2.5893 3.2944 35 1 5.9811 4.1009 1.4834 36 1 8.4259 5.0396 0.4478 37 1 6.4037 6.1630 1.8413 38 1 6.8449 8.5171 2.4127 39 1 7.4142 9.1365 4.7268 40 1 7.5328 7.4031 6.4716 41 1 7.0921 5.0490 5.9002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310210572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:33 Heat of formation + Delta-G solvation = 25.942436 kcal Electronic energy + Delta-G solvation = -18854.791390 eV Core-core repulsion = 16120.124762 eV Total energy + Delta-G solvation = -2734.666628 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.20022 -36.56705 -35.29175 -33.11227 -31.36331 -30.03450 -29.57718 -27.38703 -25.79533 -23.07877 -21.98705 -21.16858 -20.50394 -19.71938 -19.64904 -16.55713 -15.81920 -15.59931 -15.09862 -14.64690 -14.08596 -13.94179 -13.64855 -13.40766 -13.12482 -12.57644 -12.44511 -12.20864 -11.98977 -11.55828 -11.49193 -11.30590 -11.08290 -11.02436 -10.77810 -10.57748 -10.55469 -10.18822 -10.18146 -9.86923 -9.63277 -9.47400 -9.30012 -8.69274 -7.75006 -7.38195 -6.99101 -6.04112 -4.31413 2.24581 2.57482 2.69014 3.18968 3.28439 3.31695 4.28886 4.80598 5.01833 5.08338 5.13857 5.31020 5.33347 5.56759 5.77889 5.81863 5.86752 5.87967 6.00700 6.07738 6.13078 6.24114 6.29174 6.39994 6.51053 6.53235 6.60746 6.72397 6.77538 6.80463 6.90655 6.94260 6.99829 7.21614 7.35429 7.58806 7.66832 7.83414 8.01161 8.10617 8.30645 8.45028 8.85797 9.12529 9.41419 10.80485 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.005139 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.563413 B = 5447.624059 C = 6549.969365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.096 4.096 4 C -0.112 4.112 5 C -0.115 4.115 6 C 0.067 3.933 7 N -0.690 5.690 8 C 0.236 3.764 9 H 0.034 0.966 10 C -0.538 4.538 11 H 0.057 0.943 12 C 0.072 3.928 13 N -0.878 5.878 14 Si 0.892 3.108 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.282 1.282 18 C -0.017 4.017 19 C -0.051 4.051 20 C -0.148 4.148 21 C -0.154 4.154 22 C -0.145 4.145 23 C -0.136 4.136 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.023 0.977 34 H 0.048 0.952 35 H 0.364 0.636 36 H 0.266 0.734 37 H 0.144 0.856 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.249 -2.763 -1.079 8.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.164 4.164 3 C -0.133 4.133 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.063 4.063 7 N -0.327 5.327 8 C 0.128 3.872 9 H 0.052 0.948 10 C -0.577 4.577 11 H 0.075 0.925 12 C -0.131 4.131 13 N -0.516 5.516 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.208 1.208 18 C -0.019 4.019 19 C -0.070 4.070 20 C -0.167 4.167 21 C -0.172 4.172 22 C -0.163 4.163 23 C -0.155 4.155 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.189 0.811 36 H 0.076 0.924 37 H 0.162 0.838 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.688 -2.321 -0.936 9.041 hybrid contribution 1.872 -1.029 -0.558 2.208 sum -6.816 -3.350 -1.493 7.740 Atomic orbital electron populations 1.23807 0.96015 1.01538 1.02920 1.23077 0.96022 0.98893 0.98374 1.20819 0.98324 0.94783 0.99423 1.21498 0.97473 0.98562 0.97457 1.21566 0.98259 0.96227 0.99231 1.21693 0.95122 0.93150 0.96329 1.60926 1.31559 1.30006 1.10192 1.18086 0.90122 0.88689 0.90330 0.94779 1.21755 1.08497 1.18374 1.09071 0.92457 1.24991 0.97357 0.94276 0.96476 1.69620 1.39876 1.25422 1.16719 0.86530 0.83317 0.79740 0.78443 1.19844 1.20863 1.20821 1.20192 0.93505 0.96660 0.91500 1.21327 0.94695 0.90306 1.00626 1.21088 1.03060 0.97030 0.95500 1.20755 1.04556 0.97826 0.94078 1.20741 1.03898 0.93633 0.98010 1.20840 1.02731 0.95192 0.96701 0.88699 0.88901 0.87619 0.91591 0.91065 0.92167 0.92182 0.91891 0.92503 0.95901 0.93340 0.81093 0.92384 0.83816 0.88173 0.88387 0.88193 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.03 14.32 29.01 0.42 -1.61 16 2 C -0.15 -1.57 9.52 -36.03 -0.34 -1.91 16 3 C -0.10 -1.13 5.66 -27.89 -0.16 -1.29 16 4 C -0.11 -1.50 5.20 -26.73 -0.14 -1.64 16 5 C -0.11 -1.86 5.48 -26.73 -0.15 -2.00 16 6 C 0.07 1.32 5.48 -3.82 -0.02 1.30 16 7 N -0.69 -15.60 5.39 -109.18 -0.59 -16.19 16 8 C 0.24 5.73 2.50 -70.02 -0.18 5.56 16 9 H 0.03 0.82 7.75 -51.92 -0.40 0.41 16 10 C -0.54 -14.01 8.62 -34.44 -0.30 -14.31 16 11 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 12 C 0.07 1.84 5.05 -17.82 -0.09 1.75 16 13 N -0.88 -22.37 7.97 55.43 0.44 -21.93 16 14 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 C -0.02 -0.42 4.79 -104.62 -0.50 -0.92 16 19 C -0.05 -1.19 7.66 -39.58 -0.30 -1.50 16 20 C -0.15 -3.13 10.05 -39.59 -0.40 -3.53 16 21 C -0.15 -3.03 10.05 -39.58 -0.40 -3.43 16 22 C -0.14 -2.89 10.05 -39.58 -0.40 -3.28 16 23 C -0.14 -2.99 9.70 -39.58 -0.38 -3.38 16 24 H 0.09 0.89 7.84 -52.49 -0.41 0.48 16 25 H 0.09 0.79 8.06 -52.49 -0.42 0.36 16 26 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 27 H 0.07 0.76 7.79 -51.92 -0.40 0.35 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.02 0.48 8.00 -51.93 -0.42 0.06 16 34 H 0.05 0.92 8.06 -51.93 -0.42 0.50 16 35 H 0.36 8.78 5.52 -39.29 -0.22 8.57 16 36 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 37 H 0.14 3.53 5.59 -52.49 -0.29 3.24 16 38 H 0.10 1.88 8.06 -52.48 -0.42 1.45 16 39 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -25.90 334.08 -10.23 -36.13 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.76 Total: 11.73 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: -3.34 Total: -30.20 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.15 Total: -38.12 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -25.90 -10.23 -36.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310210572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.068 kcal (2) G-P(sol) polarization free energy of solvation -25.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds