Wall clock time and date at job start Mon Mar 30 2020 07:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99829 * 2 1 4 4 C 1.52997 * 109.47241 * 125.00042 * 3 2 1 5 5 C 1.53007 * 109.47309 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47034 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.46756 * 179.97438 * 6 5 4 8 8 C 1.46897 * 110.99701 * 180.02562 * 7 6 5 9 9 H 1.09007 * 109.47127 * 324.99583 * 8 7 6 10 10 C 1.50696 * 109.47661 * 84.99930 * 8 7 6 11 11 H 1.07992 * 120.00327 * 234.80216 * 10 8 7 12 12 C 1.37880 * 119.99741 * 54.79229 * 10 8 7 13 13 N 1.31520 * 120.00156 * 2.53118 * 12 10 8 14 14 Si 1.86802 * 120.00014 * 182.52785 * 12 10 8 15 15 H 1.48497 * 109.47159 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47179 * 120.00359 * 14 12 10 17 17 H 1.48503 * 109.46817 * 240.00337 * 14 12 10 18 18 C 1.50700 * 109.46942 * 205.00344 * 8 7 6 19 19 C 1.38237 * 119.99923 * 330.49637 * 18 8 7 20 20 C 1.38230 * 120.00034 * 180.02562 * 19 18 8 21 21 C 1.38230 * 120.00382 * 359.96129 * 20 19 18 22 22 C 1.38240 * 119.99864 * 359.97438 * 21 20 19 23 23 C 1.38234 * 120.00155 * 150.48344 * 18 8 7 24 24 H 1.08002 * 120.00252 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.00008 * 180.02562 * 1 2 3 26 26 H 1.07997 * 119.99822 * 180.02562 * 2 1 3 27 27 H 1.09008 * 109.47115 * 5.00181 * 3 2 1 28 28 H 1.08996 * 109.47115 * 245.00194 * 3 2 1 29 29 H 1.08995 * 109.47106 * 59.99880 * 4 3 2 30 30 H 1.09000 * 109.47390 * 299.99627 * 4 3 2 31 31 H 1.09002 * 109.46767 * 59.99842 * 5 4 3 32 32 H 1.09000 * 109.46595 * 300.00120 * 5 4 3 33 33 H 1.09001 * 109.46758 * 59.99889 * 6 5 4 34 34 H 1.09001 * 109.46981 * 299.99987 * 6 5 4 35 35 H 1.00896 * 111.00051 * 303.95373 * 7 6 5 36 36 H 0.96999 * 119.99883 * 179.97438 * 13 12 10 37 37 H 1.08002 * 119.99728 * 359.97438 * 19 18 8 38 38 H 1.08004 * 120.00107 * 179.97438 * 20 19 18 39 39 H 1.07995 * 120.00370 * 179.72251 * 21 20 19 40 40 H 1.07994 * 120.00362 * 179.97438 * 22 21 20 41 41 H 1.07992 * 120.00262 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6580 1.1812 6 6 4.7716 2.6862 2.3632 7 7 5.5069 3.9579 2.3625 8 6 6.4514 4.0205 3.4859 9 1 6.0233 3.5111 4.3493 10 6 7.7422 3.3483 3.0951 11 1 8.1416 2.5507 3.7038 12 6 8.4134 3.7516 1.9601 13 7 7.9535 4.7557 1.2460 14 14 9.9759 2.8718 1.4368 15 1 10.2795 1.7855 2.4027 16 1 9.7879 2.2924 0.0825 17 1 11.1029 3.8385 1.4096 18 6 6.7211 5.4613 3.8356 19 6 6.6512 6.4350 2.8568 20 6 6.8991 7.7565 3.1775 21 6 7.2161 8.1047 4.4771 22 6 7.2847 7.1312 5.4563 23 6 7.0381 5.8094 5.1353 24 1 -0.5401 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4026 -0.9314 29 1 3.7399 0.5067 1.0920 30 1 2.4773 1.2357 2.1130 31 1 3.0958 3.4847 1.2705 32 1 4.3583 2.7550 0.2498 33 1 5.4762 1.8594 2.2743 34 1 4.2134 2.5893 3.2944 35 1 5.9811 4.1009 1.4834 36 1 8.4259 5.0396 0.4478 37 1 6.4037 6.1630 1.8413 38 1 6.8449 8.5171 2.4127 39 1 7.4142 9.1365 4.7268 40 1 7.5328 7.4031 6.4716 41 1 7.0921 5.0490 5.9002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310210572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:33 Heat of formation + Delta-G solvation = 15.071631 kcal Electronic energy + Delta-G solvation = -18855.262783 eV Core-core repulsion = 16120.124762 eV Total energy + Delta-G solvation = -2735.138022 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.89136 -37.89521 -36.70650 -34.56961 -33.03022 -31.57311 -31.18004 -28.90400 -27.43002 -24.69436 -23.53749 -22.69030 -21.91228 -21.41857 -20.53507 -18.47313 -17.47170 -16.91697 -16.63963 -15.99453 -15.70329 -15.54624 -15.08184 -14.75718 -14.58231 -14.05787 -13.94220 -13.74485 -13.54890 -13.22659 -12.91494 -12.88434 -12.64312 -12.48325 -12.33818 -12.19429 -11.88364 -11.74881 -11.51038 -11.43919 -11.34225 -11.18947 -10.62240 -10.15305 -9.41964 -9.10436 -8.82226 -7.95752 -6.32172 0.89412 1.03781 1.34897 1.39653 1.44548 1.47604 2.37670 3.07227 3.40024 3.73290 4.07319 4.14454 4.23328 4.37193 4.40586 4.43800 4.56621 4.58356 4.68174 4.80069 4.82007 4.92377 4.95077 4.99377 5.04595 5.12606 5.21597 5.25134 5.25972 5.46288 5.51028 5.54219 5.64446 5.71330 5.79309 5.93229 5.94383 6.07927 6.10690 6.38358 6.52326 6.61761 6.98106 7.22257 7.43321 8.83648 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.005139 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.563413 B = 5447.624059 C = 6549.969365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C -0.092 4.092 4 C -0.104 4.104 5 C -0.104 4.104 6 C 0.067 3.933 7 N -0.691 5.691 8 C 0.236 3.764 9 H 0.023 0.977 10 C -0.560 4.560 11 H 0.041 0.959 12 C 0.040 3.960 13 N -0.882 5.882 14 Si 0.943 3.057 15 H -0.278 1.278 16 H -0.276 1.276 17 H -0.283 1.283 18 C -0.044 4.044 19 C -0.071 4.071 20 C -0.155 4.155 21 C -0.149 4.149 22 C -0.141 4.141 23 C -0.153 4.153 24 H 0.099 0.901 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.004 0.996 34 H 0.052 0.948 35 H 0.355 0.645 36 H 0.266 0.734 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.605 -2.033 -0.936 8.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.181 4.181 3 C -0.129 4.129 4 C -0.142 4.142 5 C -0.141 4.141 6 C -0.063 4.063 7 N -0.326 5.326 8 C 0.127 3.873 9 H 0.042 0.958 10 C -0.599 4.599 11 H 0.060 0.940 12 C -0.162 4.162 13 N -0.520 5.520 14 Si 0.770 3.230 15 H -0.203 1.203 16 H -0.202 1.202 17 H -0.209 1.209 18 C -0.045 4.045 19 C -0.089 4.089 20 C -0.173 4.173 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.172 4.172 24 H 0.117 0.883 25 H 0.126 0.874 26 H 0.129 0.871 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.022 0.978 34 H 0.070 0.930 35 H 0.178 0.822 36 H 0.076 0.924 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.060 -1.592 -0.790 9.233 hybrid contribution 1.944 -1.207 -0.551 2.354 sum -7.116 -2.798 -1.341 7.763 Atomic orbital electron populations 1.24010 0.95752 1.02537 1.01029 1.23068 0.96461 0.98500 1.00058 1.20743 0.98004 0.95750 0.98389 1.21413 0.97534 0.96592 0.98659 1.21457 0.97532 0.98063 0.97096 1.21779 0.95114 0.91274 0.98100 1.60959 1.30959 1.31448 1.09187 1.18042 0.89683 0.89308 0.90316 0.95830 1.21856 1.09671 1.18736 1.09666 0.94025 1.25482 0.99418 0.94877 0.96412 1.69743 1.40221 1.25504 1.16530 0.85741 0.80522 0.78633 0.78098 1.20293 1.20174 1.20920 1.20270 0.95171 0.96388 0.92715 1.21234 0.96319 0.91597 0.99790 1.21375 1.02456 0.96447 0.97055 1.21184 1.02714 0.99681 0.93156 1.21144 1.02275 0.92606 0.99888 1.21072 1.03178 0.96743 0.96213 0.88278 0.87364 0.87079 0.91252 0.91183 0.92388 0.91783 0.91719 0.93381 0.97766 0.92967 0.82181 0.92358 0.85674 0.86068 0.84622 0.84726 0.87377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.47 14.32 67.78 0.97 -2.50 16 2 C -0.16 -3.28 9.52 25.64 0.24 -3.03 16 3 C -0.09 -2.07 5.66 29.85 0.17 -1.90 16 4 C -0.10 -2.75 5.20 30.60 0.16 -2.59 16 5 C -0.10 -3.39 5.48 30.60 0.17 -3.22 16 6 C 0.07 2.72 5.48 86.30 0.47 3.19 16 7 N -0.69 -32.28 5.39 -499.35 -2.69 -34.97 16 8 C 0.24 11.82 2.50 43.42 0.11 11.93 16 9 H 0.02 1.18 7.75 -2.38 -0.02 1.16 16 10 C -0.56 -30.08 8.62 25.60 0.22 -29.86 16 11 H 0.04 2.29 7.81 -2.91 -0.02 2.27 16 12 C 0.04 2.09 5.05 84.65 0.43 2.52 16 13 N -0.88 -45.59 7.97 21.45 0.17 -45.42 16 14 Si 0.94 42.36 29.54 68.60 2.03 44.39 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 16 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 C -0.04 -2.15 4.79 -19.87 -0.10 -2.24 16 19 C -0.07 -3.33 7.66 22.27 0.17 -3.16 16 20 C -0.16 -6.30 10.05 22.27 0.22 -6.07 16 21 C -0.15 -5.43 10.05 22.27 0.22 -5.20 16 22 C -0.14 -5.27 10.05 22.27 0.22 -5.05 16 23 C -0.15 -6.68 9.70 22.27 0.22 -6.46 16 24 H 0.10 1.65 7.84 -2.91 -0.02 1.63 16 25 H 0.11 1.57 8.06 -2.91 -0.02 1.55 16 26 H 0.11 2.09 8.06 -2.91 -0.02 2.07 16 27 H 0.07 1.50 7.79 -2.38 -0.02 1.48 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.00 0.18 8.00 -2.39 -0.02 0.16 16 34 H 0.05 2.03 8.06 -2.39 -0.02 2.01 16 35 H 0.35 17.71 5.52 -89.70 -0.50 17.21 16 36 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 37 H 0.13 6.29 5.59 -2.91 -0.02 6.28 16 38 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 39 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 40 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 41 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -55.49 334.08 3.89 -51.60 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: 0.48 Total: 38.04 kcal Atomic # 6 Polarization: -57.55 SS G_CDS: 3.90 Total: -53.65 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -2.52 Total: -80.39 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -55.49 3.89 -51.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310210572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.675 kcal (2) G-P(sol) polarization free energy of solvation -55.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds