Wall clock time and date at job start Mon Mar 30 2020 07:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50707 * 119.99778 * 2 1 4 4 C 1.52998 * 109.47334 * 124.99720 * 3 2 1 5 5 C 1.52999 * 109.47136 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47136 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.46993 * 179.97438 * 6 5 4 8 8 C 1.46904 * 111.00121 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.46867 * 34.99967 * 8 7 6 10 10 C 1.50703 * 109.47014 * 274.99993 * 8 7 6 11 11 H 1.08001 * 120.00102 * 324.76794 * 10 8 7 12 12 C 1.37875 * 119.99904 * 144.76205 * 10 8 7 13 13 N 1.31519 * 119.99857 * 5.11051 * 12 10 8 14 14 Si 1.86802 * 120.00183 * 185.10762 * 12 10 8 15 15 H 1.48505 * 109.46955 * 90.00055 * 14 12 10 16 16 H 1.48496 * 109.47180 * 209.99986 * 14 12 10 17 17 H 1.48504 * 109.46882 * 330.00344 * 14 12 10 18 18 C 1.50696 * 109.47131 * 155.00064 * 8 7 6 19 19 C 1.38233 * 120.00101 * 45.40106 * 18 8 7 20 20 C 1.38241 * 119.99980 * 179.80867 * 19 18 8 21 21 C 1.38234 * 119.99979 * 0.39317 * 20 19 18 22 22 C 1.38243 * 119.99791 * 359.86116 * 21 20 19 23 23 C 1.38230 * 120.00250 * 359.94861 * 22 21 20 24 24 H 1.07997 * 120.00600 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.99864 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.00600 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46899 * 4.99442 * 3 2 1 28 28 H 1.09001 * 109.46505 * 244.99658 * 3 2 1 29 29 H 1.08997 * 109.47354 * 60.00000 * 4 3 2 30 30 H 1.08994 * 109.46844 * 299.99942 * 4 3 2 31 31 H 1.08997 * 109.47532 * 59.99443 * 5 4 3 32 32 H 1.09010 * 109.46816 * 299.99832 * 5 4 3 33 33 H 1.08994 * 109.46844 * 299.99839 * 6 5 4 34 34 H 1.08997 * 109.47354 * 59.99898 * 6 5 4 35 35 H 1.00902 * 111.00483 * 303.95412 * 7 6 5 36 36 H 0.97000 * 119.99875 * 180.02562 * 13 12 10 37 37 H 1.08002 * 120.00404 * 359.97438 * 19 18 8 38 38 H 1.08004 * 119.99914 * 180.22722 * 20 19 18 39 39 H 1.08000 * 120.00343 * 179.82957 * 21 20 19 40 40 H 1.08003 * 119.99781 * 179.97438 * 22 21 20 41 41 H 1.07998 * 120.00286 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3333 1.1816 5 6 3.7994 2.6586 1.1820 6 6 4.7713 2.6864 2.3632 7 7 5.5057 3.9586 2.3632 8 6 6.4502 4.0214 3.4866 9 1 6.8589 3.0284 3.6735 10 6 5.7332 4.5098 4.7189 11 1 4.9486 5.2467 4.6308 12 6 6.0787 4.0156 5.9588 13 7 7.0994 3.1948 6.0785 14 14 5.0973 4.5119 7.4688 15 1 3.9826 3.5520 7.6721 16 1 5.9832 4.5013 8.6605 17 1 4.5458 5.8769 7.2740 18 6 7.5708 4.9704 3.1483 19 6 7.2886 6.1994 2.5819 20 6 8.3164 7.0715 2.2752 21 6 9.6269 6.7113 2.5274 22 6 9.9095 5.4801 3.0890 23 6 8.8815 4.6096 3.3993 24 1 -0.5401 0.9352 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3584 2.1316 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 3.7399 0.5068 1.0922 30 1 2.4771 1.2358 2.1129 31 1 3.0942 3.4849 1.2716 32 1 4.3572 2.7565 0.2505 33 1 4.2139 2.5883 3.2947 34 1 5.4765 1.8603 2.2731 35 1 5.9792 4.1029 1.4839 36 1 7.3423 2.8469 6.9507 37 1 6.2650 6.4794 2.3814 38 1 8.0956 8.0332 1.8361 39 1 10.4301 7.3915 2.2853 40 1 10.9335 5.1985 3.2857 41 1 9.1023 3.6479 3.8384 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310210576.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:35 Heat of formation + Delta-G solvation = 21.161199 kcal Electronic energy + Delta-G solvation = -18546.041488 eV Core-core repulsion = 15811.167530 eV Total energy + Delta-G solvation = -2734.873958 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.42515 -36.66064 -35.25664 -33.12505 -31.76230 -30.10333 -29.94375 -27.44271 -25.81329 -23.23221 -22.02750 -21.43036 -20.65417 -19.80330 -19.69892 -16.54743 -15.86190 -15.66539 -15.01323 -14.78027 -14.32110 -14.10003 -13.86755 -13.49144 -13.29175 -12.89313 -12.53464 -12.14177 -12.04990 -11.89905 -11.76979 -11.39156 -11.09879 -10.95114 -10.87401 -10.72147 -10.49977 -10.24037 -10.18470 -10.00810 -9.63419 -9.51870 -9.34240 -8.52943 -8.02407 -7.67407 -7.26779 -6.06033 -4.09053 2.21925 2.31116 2.33567 3.29347 3.35891 3.40236 4.39011 4.69523 4.78917 5.03229 5.18645 5.25389 5.27146 5.44617 5.67406 5.69315 5.69422 5.78920 5.80780 5.87235 6.00152 6.10700 6.17137 6.24637 6.30973 6.44452 6.46588 6.55347 6.57727 6.69914 6.75004 6.83350 6.91848 7.00789 7.27161 7.33938 7.40944 7.73504 7.85463 7.93038 8.17570 8.22009 8.71834 9.03307 9.54464 10.99183 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.005071 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.957756 B = 5519.879339 C = 6912.442960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C -0.095 4.095 4 C -0.113 4.113 5 C -0.115 4.115 6 C 0.072 3.928 7 N -0.686 5.686 8 C 0.234 3.766 9 H 0.040 0.960 10 C -0.484 4.484 11 H 0.063 0.937 12 C 0.061 3.939 13 N -0.889 5.889 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.273 1.273 18 C -0.035 4.035 19 C -0.111 4.111 20 C -0.135 4.135 21 C -0.153 4.153 22 C -0.131 4.131 23 C -0.111 4.111 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.013 0.987 35 H 0.312 0.688 36 H 0.262 0.738 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.925 -2.081 -10.169 11.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.166 4.166 3 C -0.132 4.132 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.058 4.058 7 N -0.316 5.316 8 C 0.128 3.872 9 H 0.058 0.942 10 C -0.523 4.523 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.527 5.527 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.197 1.197 18 C -0.037 4.037 19 C -0.129 4.129 20 C -0.153 4.153 21 C -0.171 4.171 22 C -0.150 4.150 23 C -0.129 4.129 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.031 0.969 35 H 0.128 0.872 36 H 0.071 0.929 37 H 0.138 0.862 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.322 -1.849 -9.672 10.753 hybrid contribution 0.329 -0.369 0.808 0.947 sum -3.993 -2.218 -8.864 9.972 Atomic orbital electron populations 1.23817 0.96030 1.01601 1.02617 1.23056 0.96042 0.98833 0.98634 1.20807 0.98324 0.94920 0.99176 1.21499 0.97606 0.98213 0.97838 1.21601 0.98493 0.96793 0.98457 1.21759 0.95465 0.90398 0.98147 1.60772 1.32181 1.33190 1.05424 1.18407 0.86273 0.94181 0.88387 0.94219 1.21007 1.18050 1.23710 0.89523 0.91864 1.25025 0.95001 0.94903 0.99196 1.69927 1.26184 1.32322 1.24264 0.86540 0.79880 0.79112 0.82194 1.20646 1.21344 1.19737 1.20694 0.94898 0.96104 0.91979 1.20992 0.98664 0.93884 0.99385 1.20996 0.93242 0.99033 1.02007 1.20822 0.96158 0.96990 1.03145 1.20987 0.98410 0.94803 1.00759 1.21107 0.92470 0.99961 0.99397 0.88673 0.88852 0.87602 0.91549 0.91200 0.92198 0.91793 0.91480 0.92913 0.90736 0.96852 0.87183 0.92863 0.86250 0.87601 0.87784 0.87616 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.97 14.32 29.02 0.42 -1.56 16 2 C -0.15 -1.54 9.52 -36.02 -0.34 -1.88 16 3 C -0.10 -1.04 5.66 -27.88 -0.16 -1.20 16 4 C -0.11 -1.45 5.20 -26.73 -0.14 -1.59 16 5 C -0.12 -1.70 5.47 -26.73 -0.15 -1.84 16 6 C 0.07 1.35 5.48 -3.83 -0.02 1.33 16 7 N -0.69 -14.18 5.83 -109.19 -0.64 -14.82 16 8 C 0.23 5.66 2.29 -70.01 -0.16 5.50 16 9 H 0.04 1.07 6.83 -51.93 -0.35 0.72 16 10 C -0.48 -13.02 8.31 -34.44 -0.29 -13.30 16 11 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 12 C 0.06 1.67 5.45 -17.82 -0.10 1.57 16 13 N -0.89 -24.90 12.84 55.43 0.71 -24.19 16 14 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.04 -0.80 4.65 -104.62 -0.49 -1.29 16 19 C -0.11 -2.29 9.07 -39.58 -0.36 -2.65 16 20 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 21 C -0.15 -2.72 10.05 -39.58 -0.40 -3.12 16 22 C -0.13 -2.50 10.05 -39.58 -0.40 -2.90 16 23 C -0.11 -2.43 9.67 -39.58 -0.38 -2.81 16 24 H 0.09 0.88 7.84 -52.49 -0.41 0.47 16 25 H 0.09 0.78 8.06 -52.48 -0.42 0.36 16 26 H 0.11 1.02 8.06 -52.49 -0.42 0.60 16 27 H 0.07 0.72 7.79 -51.93 -0.40 0.32 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 33 H 0.07 1.57 8.00 -51.93 -0.42 1.16 16 34 H 0.01 0.26 8.06 -51.93 -0.42 -0.16 16 35 H 0.31 5.95 8.13 -39.29 -0.32 5.63 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 37 H 0.12 2.43 7.89 -52.49 -0.41 2.02 16 38 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 41 H 0.12 2.70 8.00 -52.49 -0.42 2.28 16 LS Contribution 344.42 15.07 5.19 5.19 Total: -1.00 -27.74 344.42 -10.04 -37.79 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.93 Total: 8.30 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: -3.36 Total: -28.60 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.08 Total: -39.01 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.74 -10.04 -37.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310210576.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.948 kcal (2) G-P(sol) polarization free energy of solvation -27.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds