Wall clock time and date at job start Mon Mar 30 2020 07:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47379 * 2 1 4 4 C 1.53001 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46510 * 55.00364 * 4 3 2 6 6 N 1.46497 * 109.47472 * 295.00218 * 4 3 2 7 7 C 1.38861 * 119.99773 * 138.54070 * 6 4 3 8 8 C 1.39563 * 119.84311 * 6.98010 * 7 6 4 9 9 C 1.36342 * 120.15919 * 179.71583 * 8 7 6 10 10 C 1.40882 * 119.83455 * 0.55316 * 9 8 7 11 11 C 1.41142 * 120.15584 * 179.69822 * 10 9 8 12 12 H 1.08002 * 119.99587 * 207.19598 * 11 10 9 13 13 C 1.39858 * 119.99704 * 27.19178 * 11 10 9 14 14 N 1.30898 * 120.00299 * 14.77329 * 13 11 10 15 15 Si 1.86802 * 119.99948 * 194.76669 * 13 11 10 16 16 H 1.48510 * 109.46907 * 60.00512 * 15 13 11 17 17 H 1.48500 * 109.47317 * 180.02562 * 15 13 11 18 18 H 1.48491 * 109.47415 * 300.00618 * 15 13 11 19 19 C 1.40886 * 119.69144 * 359.72289 * 10 9 8 20 20 C 1.36343 * 119.83593 * 359.97438 * 19 10 9 21 21 C 1.53008 * 109.47154 * 174.99567 * 4 3 2 22 22 C 1.53003 * 117.49315 * 114.42055 * 21 4 3 23 23 C 1.53000 * 117.49627 * 183.07973 * 21 4 3 24 24 H 1.09000 * 109.47494 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47556 * 300.00336 * 1 2 3 26 26 H 1.09004 * 109.47046 * 59.99969 * 1 2 3 27 27 H 1.08997 * 109.47594 * 239.99577 * 2 1 3 28 28 H 1.09004 * 109.47046 * 120.00031 * 2 1 3 29 29 H 1.09005 * 109.47050 * 60.00135 * 3 2 1 30 30 H 1.09004 * 109.47057 * 300.00025 * 3 2 1 31 31 H 0.96992 * 120.00032 * 318.53953 * 6 4 3 32 32 H 1.08000 * 119.92017 * 359.97438 * 8 7 6 33 33 H 1.07999 * 120.08284 * 180.27636 * 9 8 7 34 34 H 0.96999 * 120.00406 * 179.97438 * 14 13 11 35 35 H 1.08002 * 120.08221 * 179.97438 * 19 10 9 36 36 H 1.07998 * 119.91849 * 179.97438 * 20 19 10 37 37 H 1.09000 * 115.54921 * 328.75985 * 21 4 3 38 38 H 1.08999 * 117.49645 * 215.00117 * 22 21 4 39 39 H 1.08998 * 117.49908 * 0.02627 * 22 21 4 40 40 H 1.08993 * 117.50373 * 359.97438 * 23 21 4 41 41 H 1.09006 * 117.49323 * 144.98329 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9336 0.8529 -0.8411 6 7 4.0579 0.8589 1.2527 7 6 5.1390 -0.0124 1.2376 8 6 5.8496 -0.2171 0.0540 9 6 6.9158 -1.0667 0.0333 10 6 7.2923 -1.7476 1.2077 11 6 8.3909 -2.6335 1.1924 12 1 8.4308 -3.4563 1.8909 13 6 9.4277 -2.4458 0.2727 14 7 9.5351 -1.3105 -0.3699 15 14 10.6594 -3.8153 -0.0385 16 1 9.9467 -5.0171 -0.5417 17 1 11.6517 -3.3685 -1.0489 18 1 11.3592 -4.1490 1.2280 19 6 6.5667 -1.5405 2.3975 20 6 5.5066 -0.6832 2.4050 21 6 4.0801 2.8795 -0.1252 22 6 4.8441 3.4645 1.0644 23 6 5.5933 3.0865 -0.2159 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.6257 1.0811 2.0921 32 1 5.5568 0.3020 -0.8467 33 1 7.4675 -1.2207 -0.8823 34 1 10.2544 -1.1802 -1.0075 35 1 6.8496 -2.0595 3.3014 36 1 4.9492 -0.5237 3.3162 37 1 3.4443 3.5556 -0.6967 38 1 4.7110 4.5256 1.2753 39 1 4.9836 2.8255 1.9363 40 1 6.2255 2.1992 -0.1855 41 1 5.9531 3.8988 -0.8475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310315330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:59 Heat of formation + Delta-G solvation = 21.020220 kcal Electronic energy + Delta-G solvation = -19310.248347 eV Core-core repulsion = 16575.368276 eV Total energy + Delta-G solvation = -2734.880071 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.41703 -38.63350 -36.09302 -35.55023 -33.89982 -31.34853 -30.99050 -29.22468 -26.12792 -25.11253 -23.49413 -22.79632 -22.26506 -21.74084 -20.33307 -19.12732 -17.91702 -16.91205 -16.68899 -16.59189 -15.73713 -15.52091 -15.09051 -14.71042 -14.36074 -14.25515 -13.83412 -13.61082 -13.38530 -13.26560 -12.89141 -12.73757 -12.52185 -12.42685 -12.31045 -12.28807 -12.08098 -11.75067 -11.56470 -11.45587 -11.20672 -11.10112 -10.93232 -10.65092 -10.23046 -9.35792 -8.50085 -8.07696 -5.99625 1.13966 1.21993 1.39484 1.50362 1.60408 2.28265 2.83235 2.88129 3.12865 3.72805 3.86580 4.13025 4.15018 4.24314 4.27453 4.39015 4.43999 4.52819 4.62672 4.70726 4.87364 4.88474 4.91499 4.99885 5.05835 5.09495 5.19704 5.20956 5.28905 5.31649 5.41097 5.41475 5.43649 5.48718 5.55337 5.74574 5.85260 6.00598 6.21419 6.43223 6.71576 6.92870 7.11351 7.19739 7.38086 8.52302 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024111 B = 0.005077 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.030303 B = 5513.491702 C = 5995.047003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C -0.110 4.110 4 C 0.181 3.819 5 H 0.064 0.936 6 N -0.735 5.735 7 C 0.130 3.870 8 C -0.171 4.171 9 C -0.138 4.138 10 C 0.033 3.967 11 C -0.508 4.508 12 H 0.065 0.935 13 C 0.031 3.969 14 N -0.847 5.847 15 Si 0.975 3.025 16 H -0.263 1.263 17 H -0.271 1.271 18 H -0.263 1.263 19 C -0.193 4.193 20 C -0.171 4.171 21 C -0.157 4.157 22 C -0.165 4.165 23 C -0.201 4.201 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.395 0.605 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.280 0.720 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.379 7.434 -0.933 15.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C -0.148 4.148 4 C 0.075 3.925 5 H 0.082 0.918 6 N -0.368 5.368 7 C 0.030 3.970 8 C -0.193 4.193 9 C -0.158 4.158 10 C 0.030 3.970 11 C -0.540 4.540 12 H 0.083 0.917 13 C -0.180 4.180 14 N -0.476 5.476 15 Si 0.797 3.203 16 H -0.188 1.188 17 H -0.195 1.195 18 H -0.188 1.188 19 C -0.214 4.214 20 C -0.193 4.193 21 C -0.176 4.176 22 C -0.202 4.202 23 C -0.238 4.238 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.230 0.770 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.133 0.867 37 H 0.144 0.856 38 H 0.121 0.879 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.254 7.585 -1.280 15.324 hybrid contribution 1.051 -0.636 0.143 1.237 sum -12.203 6.950 -1.137 14.089 Atomic orbital electron populations 1.21731 0.94671 1.01640 1.02249 1.21448 0.96429 0.96901 1.01213 1.21801 0.92693 0.96908 1.03388 1.20378 0.93989 0.90771 0.87357 0.91821 1.43935 1.34003 1.50877 1.08014 1.17359 0.91240 0.94958 0.93452 1.20233 0.98596 1.03710 0.96756 1.20845 0.96815 1.00267 0.97888 1.17779 0.93567 0.94215 0.91430 1.19552 1.04533 1.12386 1.17552 0.91685 1.26554 0.99799 0.97681 0.93939 1.69903 1.30903 1.24090 1.22657 0.85371 0.77425 0.78711 0.78818 1.18799 1.19522 1.18756 1.20753 1.00436 1.03579 0.96594 1.20091 1.00603 1.01684 0.96953 1.23021 0.93580 0.98361 1.02684 1.22862 1.04022 1.00910 0.92422 1.22974 0.95460 1.03038 1.02309 0.93099 0.92202 0.91960 0.93569 0.93271 0.90724 0.89606 0.77048 0.87857 0.88743 0.90977 0.88910 0.86704 0.85638 0.87929 0.89777 0.91151 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.91 71.98 0.71 -1.81 16 2 C -0.12 -2.71 5.82 30.59 0.18 -2.53 16 3 C -0.11 -2.19 4.82 30.59 0.15 -2.04 16 4 C 0.18 4.79 2.31 44.99 0.10 4.90 16 5 H 0.06 1.99 5.86 -2.38 -0.01 1.98 16 6 N -0.73 -22.57 2.86 -318.52 -0.91 -23.48 16 7 C 0.13 5.32 6.63 38.67 0.26 5.57 16 8 C -0.17 -7.92 7.50 22.15 0.17 -7.76 16 9 C -0.14 -7.52 8.61 22.47 0.19 -7.32 16 10 C 0.03 1.85 5.55 -21.27 -0.12 1.74 16 11 C -0.51 -29.16 9.04 23.38 0.21 -28.95 16 12 H 0.06 3.62 7.89 -2.91 -0.02 3.60 16 13 C 0.03 1.68 5.18 85.22 0.44 2.12 16 14 N -0.85 -47.26 10.95 21.81 0.24 -47.02 16 15 Si 0.97 41.08 29.58 68.60 2.03 43.11 16 16 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 17 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 18 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 19 C -0.19 -9.79 9.74 22.48 0.22 -9.57 16 20 C -0.17 -7.45 9.83 22.15 0.22 -7.23 16 21 C -0.16 -3.84 5.72 -10.79 -0.06 -3.90 16 22 C -0.16 -4.33 9.85 30.62 0.30 -4.03 16 23 C -0.20 -6.05 10.19 30.62 0.31 -5.74 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 1.28 7.75 -2.39 -0.02 1.26 16 29 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.39 10.74 8.61 -92.71 -0.80 9.94 16 32 H 0.10 4.45 5.56 -2.91 -0.02 4.43 16 33 H 0.09 5.47 6.24 -2.91 -0.02 5.46 16 34 H 0.28 14.33 8.30 -92.71 -0.77 13.56 16 35 H 0.09 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 37 H 0.13 2.43 8.09 -2.39 -0.02 2.41 16 38 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.08 2.51 6.81 -2.39 -0.02 2.49 16 40 H 0.07 2.71 5.81 -2.39 -0.01 2.70 16 41 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 Total: -1.00 -61.23 327.57 4.85 -56.37 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: 0.21 Total: 37.56 kcal Atomic # 6 Polarization: -69.83 SS G_CDS: 3.28 Total: -66.55 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -0.67 Total: -70.50 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -61.23 4.85 -56.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310315330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.394 kcal (2) G-P(sol) polarization free energy of solvation -61.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds