Wall clock time and date at job start Mon Mar 30 2020 06:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 112.84575 * 2 1 4 4 C 1.53779 * 113.61834 * 228.80379 * 2 1 3 5 5 C 1.53955 * 87.01776 * 220.04948 * 4 2 1 6 6 C 1.53773 * 87.11306 * 25.36004 * 5 4 2 7 7 H 1.09003 * 113.61327 * 89.18887 * 6 5 4 8 8 N 1.46901 * 113.61457 * 220.09046 * 6 5 4 9 9 C 1.46903 * 110.99942 * 252.50019 * 8 6 5 10 10 H 1.08995 * 109.46920 * 324.99628 * 9 8 6 11 11 C 1.50696 * 109.46955 * 85.00222 * 9 8 6 12 12 H 1.08005 * 119.99873 * 234.57620 * 11 9 8 13 13 C 1.37875 * 120.00638 * 54.57878 * 11 9 8 14 14 N 1.31517 * 119.99464 * 350.56257 * 13 11 9 15 15 Si 1.86805 * 120.00392 * 170.55988 * 13 11 9 16 16 H 1.48500 * 109.46905 * 90.00184 * 15 13 11 17 17 H 1.48498 * 109.46875 * 210.00163 * 15 13 11 18 18 H 1.48494 * 109.46933 * 330.00275 * 15 13 11 19 19 C 1.50707 * 109.46924 * 204.99763 * 9 8 6 20 20 C 1.38234 * 119.99749 * 150.98819 * 19 9 8 21 21 C 1.38233 * 119.99881 * 179.78517 * 20 19 9 22 22 C 1.38236 * 120.00231 * 0.44983 * 21 20 19 23 23 C 1.38243 * 119.99380 * 359.80702 * 22 21 20 24 24 C 1.38229 * 120.00488 * 359.97438 * 23 22 21 25 25 H 1.08992 * 109.47296 * 50.33637 * 1 2 3 26 26 H 1.08999 * 109.46581 * 170.33397 * 1 2 3 27 27 H 1.08998 * 109.47287 * 290.33488 * 1 2 3 28 28 H 1.09005 * 109.47180 * 69.66761 * 3 2 1 29 29 H 1.09004 * 109.47237 * 189.66617 * 3 2 1 30 30 H 1.08996 * 109.47195 * 309.66753 * 3 2 1 31 31 H 1.09000 * 113.60955 * 334.56642 * 4 2 1 32 32 H 1.08991 * 113.61190 * 105.46584 * 4 2 1 33 33 H 1.09003 * 113.53270 * 270.80916 * 5 4 2 34 34 H 1.09000 * 113.74072 * 139.94557 * 5 4 2 35 35 H 1.00900 * 111.00513 * 128.54512 * 8 6 5 36 36 H 0.97003 * 119.99731 * 179.97438 * 14 13 11 37 37 H 1.08000 * 119.99937 * 0.02562 * 20 19 9 38 38 H 1.08002 * 120.00139 * 180.27384 * 21 20 19 39 39 H 1.08000 * 120.00592 * 179.83182 * 22 21 20 40 40 H 1.08006 * 119.99543 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.00171 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1240 1.4100 0.0000 4 6 2.1461 -0.9280 -1.0602 5 6 3.1924 -1.3135 0.0014 6 6 2.1460 -0.9280 1.0603 7 1 1.4945 -1.7522 1.3507 8 7 2.7107 -0.2122 2.2122 9 6 2.7357 -1.0702 3.4044 10 1 1.8621 -1.7219 3.4014 11 6 3.9880 -1.9085 3.3936 12 1 3.9189 -2.9834 3.4732 13 6 5.2218 -1.3034 3.2824 14 7 5.3024 -0.0214 3.0002 15 14 6.7791 -2.3044 3.5325 16 1 7.2168 -2.8721 2.2320 17 1 7.8485 -1.4288 4.0755 18 1 6.5097 -3.4080 4.4889 19 6 2.7172 -0.2107 4.6422 20 6 2.1518 -0.6910 5.8086 21 6 2.1387 0.0956 6.9452 22 6 2.6828 1.3660 6.9130 23 6 3.2434 1.8482 5.7450 24 6 3.2605 1.0600 4.6096 25 1 -0.3633 0.6559 -0.7910 26 1 -0.3632 -1.0131 -0.1726 27 1 -0.3634 0.3571 0.9636 28 1 1.9360 1.8835 0.9637 29 1 3.1988 1.3515 -0.1726 30 1 1.6606 1.9995 -0.7910 31 1 1.4946 -1.7522 -1.3506 32 1 2.5650 -0.3969 -1.9148 33 1 4.0711 -0.6685 0.0008 34 1 3.4455 -2.3737 0.0034 35 1 2.2035 0.6414 2.3916 36 1 6.1705 0.4044 2.9223 37 1 1.7237 -1.6822 5.8329 38 1 1.7009 -0.2813 7.8578 39 1 2.6702 1.9816 7.8002 40 1 3.6689 2.8406 5.7199 41 1 3.6989 1.4366 3.6973 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310361600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:08 Heat of formation + Delta-G solvation = 48.831189 kcal Electronic energy + Delta-G solvation = -20167.907395 eV Core-core repulsion = 17434.233298 eV Total energy + Delta-G solvation = -2733.674097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.20678 -38.10811 -34.40966 -31.48491 -30.13949 -29.91577 -29.29164 -27.02514 -26.26634 -23.57590 -22.15219 -21.62703 -21.15267 -19.80986 -17.49208 -16.30629 -15.77000 -14.81472 -14.77339 -14.54509 -14.05253 -13.80264 -13.51164 -12.89793 -12.65043 -12.46757 -12.31066 -12.09456 -11.73789 -11.58577 -11.56759 -11.44519 -10.93868 -10.87343 -10.71237 -10.44782 -10.38943 -10.03599 -10.00763 -9.65902 -9.42563 -9.20529 -9.16307 -8.36429 -7.87330 -7.47939 -6.76221 -5.77196 -3.93656 2.42511 2.51466 3.34980 3.42155 3.46381 4.51291 4.90672 5.03037 5.22263 5.23932 5.42176 5.69654 5.74358 5.77730 5.86741 5.91709 5.98616 6.01076 6.04168 6.22895 6.26430 6.27462 6.35560 6.39044 6.46851 6.55262 6.63304 6.71669 6.85972 6.89493 6.96526 7.07294 7.17141 7.20948 7.32108 7.44540 7.61435 7.92153 7.94537 8.15153 8.28147 8.56697 8.91107 9.17057 9.71502 11.17021 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.009265 C = 0.006667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.718858 B = 3021.472630 C = 4198.712590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.113 4.113 4 C -0.140 4.140 5 C -0.109 4.109 6 C 0.092 3.908 7 H 0.049 0.951 8 N -0.624 5.624 9 C 0.249 3.751 10 H -0.002 1.002 11 C -0.517 4.517 12 H 0.050 0.950 13 C 0.095 3.905 14 N -0.825 5.825 15 Si 0.871 3.129 16 H -0.283 1.283 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.038 4.038 20 C -0.133 4.133 21 C -0.139 4.139 22 C -0.154 4.154 23 C -0.142 4.142 24 C -0.079 4.079 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.307 0.693 36 H 0.251 0.749 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.748 2.770 -2.641 7.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.098 4.098 3 C -0.170 4.170 4 C -0.178 4.178 5 C -0.147 4.147 6 C -0.019 4.019 7 H 0.067 0.933 8 N -0.255 5.255 9 C 0.141 3.859 10 H 0.015 0.985 11 C -0.555 4.555 12 H 0.069 0.931 13 C -0.113 4.113 14 N -0.458 5.458 15 Si 0.699 3.301 16 H -0.209 1.209 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.040 4.040 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.172 4.172 23 C -0.160 4.160 24 C -0.098 4.098 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.126 0.874 36 H 0.061 0.939 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.963 2.805 -2.836 7.174 hybrid contribution 0.202 -0.725 0.618 0.974 sum -5.761 2.080 -2.219 6.514 Atomic orbital electron populations 1.21740 0.95596 1.00862 1.00937 1.22158 0.93727 0.95830 0.98075 1.21369 1.01221 0.93783 1.00628 1.23013 0.99432 0.98678 0.96696 1.22845 0.97501 1.00458 0.93907 1.22802 0.93891 0.94409 0.90843 0.93321 1.61047 1.54632 1.05454 1.04340 1.18243 0.94806 0.88991 0.83848 0.98470 1.20735 0.90111 0.91891 1.52742 0.93150 1.24771 0.97915 0.94637 0.93984 1.70059 1.22912 1.09576 1.43298 0.86964 0.84287 0.80597 0.78245 1.20900 1.21404 1.20250 1.20583 0.92968 0.93624 0.96793 1.20897 1.01798 0.98990 0.93443 1.20803 1.02324 0.95108 0.97535 1.20799 1.02460 0.96357 0.97571 1.21136 1.01229 0.99536 0.94108 1.21542 0.95584 0.93475 0.99154 0.93365 0.93182 0.93102 0.92398 0.91602 0.94191 0.91430 0.92399 0.89357 0.93032 0.87395 0.93853 0.87737 0.88018 0.88197 0.87940 0.83005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.18 37.16 0.34 -1.52 16 2 C -0.10 -1.54 1.27 -153.70 -0.20 -1.73 16 3 C -0.11 -1.76 8.42 37.16 0.31 -1.44 16 4 C -0.14 -2.18 7.22 -25.83 -0.19 -2.36 16 5 C -0.11 -2.07 7.54 -25.83 -0.19 -2.26 16 6 C 0.09 1.76 3.46 -66.91 -0.23 1.52 16 7 H 0.05 0.98 7.44 -51.93 -0.39 0.59 16 8 N -0.62 -13.33 3.87 -101.33 -0.39 -13.72 16 9 C 0.25 5.85 2.46 -70.01 -0.17 5.67 16 10 H 0.00 -0.06 7.42 -51.93 -0.39 -0.44 16 11 C -0.52 -13.55 8.73 -34.44 -0.30 -13.85 16 12 H 0.05 1.36 7.83 -52.48 -0.41 0.95 16 13 C 0.09 2.47 5.21 -17.82 -0.09 2.38 16 14 N -0.83 -21.42 9.54 55.43 0.53 -20.89 16 15 Si 0.87 20.93 29.55 -169.99 -5.02 15.91 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 C -0.04 -0.87 4.65 -104.62 -0.49 -1.36 16 20 C -0.13 -2.79 9.71 -39.58 -0.38 -3.17 16 21 C -0.14 -2.65 10.05 -39.58 -0.40 -3.04 16 22 C -0.15 -2.86 10.05 -39.58 -0.40 -3.26 16 23 C -0.14 -2.82 10.05 -39.58 -0.40 -3.21 16 24 C -0.08 -1.75 7.62 -39.59 -0.30 -2.05 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.67 7.98 -51.93 -0.41 0.25 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.93 6.79 -51.93 -0.35 0.57 16 29 H 0.06 1.13 7.34 -51.93 -0.38 0.75 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.97 7.99 -51.93 -0.41 0.56 16 32 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.09 1.87 7.64 -51.93 -0.40 1.48 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.31 6.33 5.70 -39.29 -0.22 6.11 16 36 H 0.25 6.45 8.31 -40.82 -0.34 6.11 16 37 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 38 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.10 1.81 8.06 -52.48 -0.42 1.38 16 41 H 0.15 3.56 5.77 -52.49 -0.30 3.25 16 LS Contribution 322.99 15.07 4.87 4.87 Total: -1.00 -25.96 322.99 -9.71 -35.67 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.61 Total: 7.85 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: -3.09 Total: -29.69 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.14 Total: -34.61 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -25.96 -9.71 -35.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310361600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.506 kcal (2) G-P(sol) polarization free energy of solvation -25.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds