Wall clock time and date at job start Mon Mar 30 2020 06:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 112.84575 * 2 1 4 4 C 1.53779 * 113.61834 * 228.80379 * 2 1 3 5 5 C 1.53955 * 87.01776 * 220.04948 * 4 2 1 6 6 C 1.53773 * 87.11306 * 25.36004 * 5 4 2 7 7 H 1.09003 * 113.61327 * 89.18887 * 6 5 4 8 8 N 1.46901 * 113.61457 * 220.09046 * 6 5 4 9 9 C 1.46903 * 110.99942 * 252.50019 * 8 6 5 10 10 H 1.08995 * 109.46920 * 324.99628 * 9 8 6 11 11 C 1.50696 * 109.46955 * 85.00222 * 9 8 6 12 12 H 1.08005 * 119.99873 * 234.57620 * 11 9 8 13 13 C 1.37875 * 120.00638 * 54.57878 * 11 9 8 14 14 N 1.31517 * 119.99464 * 350.56257 * 13 11 9 15 15 Si 1.86805 * 120.00392 * 170.55988 * 13 11 9 16 16 H 1.48500 * 109.46905 * 90.00184 * 15 13 11 17 17 H 1.48498 * 109.46875 * 210.00163 * 15 13 11 18 18 H 1.48494 * 109.46933 * 330.00275 * 15 13 11 19 19 C 1.50707 * 109.46924 * 204.99763 * 9 8 6 20 20 C 1.38234 * 119.99749 * 150.98819 * 19 9 8 21 21 C 1.38233 * 119.99881 * 179.78517 * 20 19 9 22 22 C 1.38236 * 120.00231 * 0.44983 * 21 20 19 23 23 C 1.38243 * 119.99380 * 359.80702 * 22 21 20 24 24 C 1.38229 * 120.00488 * 359.97438 * 23 22 21 25 25 H 1.08992 * 109.47296 * 50.33637 * 1 2 3 26 26 H 1.08999 * 109.46581 * 170.33397 * 1 2 3 27 27 H 1.08998 * 109.47287 * 290.33488 * 1 2 3 28 28 H 1.09005 * 109.47180 * 69.66761 * 3 2 1 29 29 H 1.09004 * 109.47237 * 189.66617 * 3 2 1 30 30 H 1.08996 * 109.47195 * 309.66753 * 3 2 1 31 31 H 1.09000 * 113.60955 * 334.56642 * 4 2 1 32 32 H 1.08991 * 113.61190 * 105.46584 * 4 2 1 33 33 H 1.09003 * 113.53270 * 270.80916 * 5 4 2 34 34 H 1.09000 * 113.74072 * 139.94557 * 5 4 2 35 35 H 1.00900 * 111.00513 * 128.54512 * 8 6 5 36 36 H 0.97003 * 119.99731 * 179.97438 * 14 13 11 37 37 H 1.08000 * 119.99937 * 0.02562 * 20 19 9 38 38 H 1.08002 * 120.00139 * 180.27384 * 21 20 19 39 39 H 1.08000 * 120.00592 * 179.83182 * 22 21 20 40 40 H 1.08006 * 119.99543 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.00171 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1240 1.4100 0.0000 4 6 2.1461 -0.9280 -1.0602 5 6 3.1924 -1.3135 0.0014 6 6 2.1460 -0.9280 1.0603 7 1 1.4945 -1.7522 1.3507 8 7 2.7107 -0.2122 2.2122 9 6 2.7357 -1.0702 3.4044 10 1 1.8621 -1.7219 3.4014 11 6 3.9880 -1.9085 3.3936 12 1 3.9189 -2.9834 3.4732 13 6 5.2218 -1.3034 3.2824 14 7 5.3024 -0.0214 3.0002 15 14 6.7791 -2.3044 3.5325 16 1 7.2168 -2.8721 2.2320 17 1 7.8485 -1.4288 4.0755 18 1 6.5097 -3.4080 4.4889 19 6 2.7172 -0.2107 4.6422 20 6 2.1518 -0.6910 5.8086 21 6 2.1387 0.0956 6.9452 22 6 2.6828 1.3660 6.9130 23 6 3.2434 1.8482 5.7450 24 6 3.2605 1.0600 4.6096 25 1 -0.3633 0.6559 -0.7910 26 1 -0.3632 -1.0131 -0.1726 27 1 -0.3634 0.3571 0.9636 28 1 1.9360 1.8835 0.9637 29 1 3.1988 1.3515 -0.1726 30 1 1.6606 1.9995 -0.7910 31 1 1.4946 -1.7522 -1.3506 32 1 2.5650 -0.3969 -1.9148 33 1 4.0711 -0.6685 0.0008 34 1 3.4455 -2.3737 0.0034 35 1 2.2035 0.6414 2.3916 36 1 6.1705 0.4044 2.9223 37 1 1.7237 -1.6822 5.8329 38 1 1.7009 -0.2813 7.8578 39 1 2.6702 1.9816 7.8002 40 1 3.6689 2.8406 5.7199 41 1 3.6989 1.4366 3.6973 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310361600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:07 Heat of formation + Delta-G solvation = 37.699523 kcal Electronic energy + Delta-G solvation = -20168.390100 eV Core-core repulsion = 17434.233298 eV Total energy + Delta-G solvation = -2734.156803 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.67513 -39.67248 -36.14406 -33.40760 -31.58834 -31.41254 -30.83913 -28.36334 -28.01000 -25.20557 -23.79641 -23.10699 -22.67826 -21.52178 -18.92369 -18.16646 -17.40223 -16.68769 -16.31472 -16.02940 -15.64057 -15.34789 -14.92405 -14.68982 -13.98980 -13.90613 -13.83211 -13.65815 -13.45821 -13.22556 -12.89322 -12.82684 -12.75286 -12.59850 -12.21635 -12.09412 -11.93720 -11.71938 -11.53184 -11.31622 -11.07970 -10.80136 -10.66379 -10.31855 -9.46621 -9.13718 -8.49699 -7.74934 -5.98415 0.82161 0.93482 1.39470 1.43527 1.49317 2.51453 3.26392 3.39156 3.69131 3.84894 3.88090 4.22672 4.34098 4.36529 4.38251 4.49922 4.53556 4.69854 4.75925 4.83336 4.91509 4.92859 4.97907 5.03347 5.05578 5.11799 5.20987 5.24212 5.31040 5.38073 5.46726 5.51542 5.60288 5.76750 5.80355 5.84889 5.87194 6.01695 6.25079 6.37375 6.53775 6.70469 7.13810 7.34700 7.67486 9.13606 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.009265 C = 0.006667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.718858 B = 3021.472630 C = 4198.712590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 C -0.108 4.108 4 C -0.121 4.121 5 C -0.115 4.115 6 C 0.078 3.922 7 H 0.036 0.964 8 N -0.626 5.626 9 C 0.252 3.748 10 H -0.018 1.018 11 C -0.536 4.536 12 H 0.030 0.970 13 C 0.066 3.934 14 N -0.829 5.829 15 Si 0.914 3.086 16 H -0.283 1.283 17 H -0.286 1.286 18 H -0.283 1.283 19 C -0.062 4.062 20 C -0.150 4.150 21 C -0.136 4.136 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.093 4.093 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.035 0.965 35 H 0.309 0.691 36 H 0.248 0.752 37 H 0.106 0.894 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.124 0.876 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.736 3.962 -2.255 8.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.087 4.087 3 C -0.165 4.165 4 C -0.158 4.158 5 C -0.154 4.154 6 C -0.033 4.033 7 H 0.054 0.946 8 N -0.256 5.256 9 C 0.144 3.856 10 H -0.001 1.001 11 C -0.574 4.574 12 H 0.048 0.952 13 C -0.141 4.141 14 N -0.463 5.463 15 Si 0.742 3.258 16 H -0.209 1.209 17 H -0.212 1.212 18 H -0.208 1.208 19 C -0.063 4.063 20 C -0.168 4.168 21 C -0.154 4.154 22 C -0.165 4.165 23 C -0.165 4.165 24 C -0.112 4.112 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.129 0.871 36 H 0.058 0.942 37 H 0.125 0.875 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.142 0.858 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.954 3.999 -2.456 8.389 hybrid contribution 0.486 -1.096 0.553 1.321 sum -6.468 2.903 -1.903 7.340 Atomic orbital electron populations 1.21697 0.93494 1.01864 1.01596 1.22079 0.95305 0.95294 0.95997 1.21319 1.00073 0.93953 1.01177 1.22931 0.97814 0.98985 0.96116 1.22773 0.97500 0.98852 0.96271 1.22926 0.94314 0.95196 0.90837 0.94600 1.60871 1.55203 1.05411 1.04129 1.18093 0.92933 0.89188 0.85423 1.00087 1.20841 0.91751 0.91286 1.53567 0.95206 1.25142 0.99351 0.95441 0.94140 1.70162 1.22806 1.09869 1.43432 0.86302 0.82237 0.79499 0.77809 1.20931 1.21161 1.20816 1.20549 0.94698 0.94168 0.96856 1.21093 1.02224 0.99648 0.93884 1.21184 1.01370 0.94960 0.97845 1.21224 1.00564 0.96431 0.98241 1.21414 1.01019 1.00256 0.93796 1.21395 0.96471 0.93764 0.99543 0.91034 0.92598 0.93559 0.93225 0.93719 0.91386 0.89708 0.90804 0.91983 0.94615 0.87127 0.94192 0.87540 0.84688 0.84458 0.85765 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.18 71.98 0.66 -2.64 16 2 C -0.09 -2.64 1.27 -51.66 -0.07 -2.70 16 3 C -0.11 -3.26 8.42 71.98 0.61 -2.65 16 4 C -0.12 -3.58 7.22 31.18 0.23 -3.36 16 5 C -0.12 -4.52 7.54 31.18 0.23 -4.29 16 6 C 0.08 3.08 3.46 45.44 0.16 3.23 16 7 H 0.04 1.51 7.44 -2.39 -0.02 1.49 16 8 N -0.63 -27.74 3.87 -474.49 -1.84 -29.57 16 9 C 0.25 12.33 2.46 43.42 0.11 12.44 16 10 H -0.02 -0.93 7.42 -2.39 -0.02 -0.94 16 11 C -0.54 -29.27 8.73 25.60 0.22 -29.04 16 12 H 0.03 1.69 7.83 -2.91 -0.02 1.67 16 13 C 0.07 3.54 5.21 84.65 0.44 3.98 16 14 N -0.83 -44.08 9.54 21.45 0.20 -43.87 16 15 Si 0.91 43.81 29.55 68.60 2.03 45.83 16 16 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 17 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 18 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 19 C -0.06 -2.84 4.65 -19.86 -0.09 -2.93 16 20 C -0.15 -6.25 9.71 22.27 0.22 -6.03 16 21 C -0.14 -4.79 10.05 22.27 0.22 -4.57 16 22 C -0.15 -4.98 10.05 22.27 0.22 -4.76 16 23 C -0.15 -5.56 10.05 22.27 0.22 -5.34 16 24 C -0.09 -4.13 7.62 22.27 0.17 -3.96 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 1.36 7.98 -2.39 -0.02 1.34 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.05 1.57 6.79 -2.38 -0.02 1.55 16 29 H 0.04 1.53 7.34 -2.39 -0.02 1.51 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 2.25 7.99 -2.39 -0.02 2.23 16 32 H 0.07 1.98 8.10 -2.39 -0.02 1.97 16 33 H 0.06 2.75 7.64 -2.39 -0.02 2.73 16 34 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.31 13.21 5.70 -89.69 -0.51 12.69 16 36 H 0.25 12.97 8.31 -92.71 -0.77 12.20 16 37 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 39 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 40 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 41 H 0.13 6.35 5.77 -2.91 -0.02 6.33 16 Total: -1.00 -56.95 322.99 4.43 -52.52 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.48 Total: 27.71 kcal Atomic # 6 Polarization: -56.17 SS G_CDS: 3.55 Total: -52.61 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -1.63 Total: -73.45 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -56.95 4.43 -52.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310361600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.220 kcal (2) G-P(sol) polarization free energy of solvation -56.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds