Wall clock time and date at job start Mon Mar 30 2020 07:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46801 * 2 1 4 4 H 1.08997 * 110.67318 * 56.77880 * 3 2 1 5 5 C 1.54884 * 110.75347 * 293.54009 * 3 2 1 6 6 C 1.54266 * 104.19482 * 203.56117 * 5 3 2 7 7 C 1.53879 * 106.59770 * 23.61145 * 6 5 3 8 8 H 1.09005 * 110.03321 * 240.66372 * 7 6 5 9 9 N 1.46504 * 110.03118 * 119.28642 * 7 6 5 10 10 C 1.39684 * 120.00115 * 86.45230 * 9 7 6 11 11 C 1.39334 * 119.95299 * 359.72886 * 10 9 7 12 12 C 1.38478 * 120.42523 * 179.97438 * 11 10 9 13 13 C 1.37683 * 120.32566 * 359.97438 * 12 11 10 14 14 C 1.40755 * 119.89166 * 0.02562 * 13 12 11 15 15 C 1.41408 * 120.20672 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00439 * 150.21541 * 15 14 13 17 17 C 1.39932 * 119.99800 * 330.20891 * 15 14 13 18 18 N 1.30835 * 119.99761 * 161.72498 * 17 15 14 19 19 Si 1.86801 * 120.00407 * 341.72977 * 17 15 14 20 20 H 1.48501 * 109.47381 * 95.40696 * 19 17 15 21 21 H 1.48498 * 109.47237 * 215.40976 * 19 17 15 22 22 H 1.48504 * 109.47007 * 335.40910 * 19 17 15 23 23 C 1.38279 * 119.95154 * 179.44793 * 10 9 7 24 24 C 1.54261 * 106.59948 * 0.02562 * 7 6 5 25 25 H 1.08999 * 109.46930 * 300.00523 * 1 2 3 26 26 H 1.09003 * 109.46718 * 60.00281 * 1 2 3 27 27 H 1.08998 * 109.46790 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47504 * 239.99619 * 2 1 3 29 29 H 1.09000 * 109.47019 * 119.99300 * 2 1 3 30 30 H 1.08998 * 110.48733 * 84.88566 * 5 3 2 31 31 H 1.08995 * 110.60211 * 322.29296 * 5 3 2 32 32 H 1.09000 * 110.03598 * 264.32944 * 6 5 3 33 33 H 1.09000 * 110.03668 * 142.89456 * 6 5 3 34 34 H 0.97005 * 119.99661 * 266.18246 * 9 7 6 35 35 H 1.08002 * 119.78517 * 359.97438 * 11 10 9 36 36 H 1.08000 * 119.83451 * 179.97438 * 12 11 10 37 37 H 1.08002 * 120.05285 * 180.02562 * 13 12 11 38 38 H 0.96996 * 119.99661 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.15717 * 0.02562 * 23 10 9 40 40 H 1.09001 * 110.48693 * 95.06473 * 24 7 6 41 41 H 1.08999 * 110.48518 * 217.71122 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6415 1.9916 0.8531 5 6 1.6775 2.1528 -1.3278 6 6 2.7159 3.2876 -1.4455 7 6 3.9309 2.8608 -0.6032 8 1 4.1047 3.5832 0.1944 9 7 5.1195 2.7571 -1.4535 10 6 5.9020 3.8873 -1.7009 11 6 5.5481 5.1142 -1.1432 12 6 6.3171 6.2408 -1.3816 13 6 7.4412 6.1606 -2.1727 14 6 7.8111 4.9281 -2.7430 15 6 8.9646 4.8380 -3.5561 16 1 9.5233 3.9150 -3.6004 17 6 9.3819 5.9450 -4.3034 18 7 10.6057 6.0004 -4.7629 19 14 8.1919 7.3439 -4.6449 20 1 8.3814 8.4134 -3.6323 21 1 8.4502 7.8938 -5.9999 22 1 6.7981 6.8365 -4.5740 23 6 7.0300 3.7859 -2.4943 24 6 3.5887 1.4813 -0.0036 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8898 29 1 1.8934 -0.5137 0.8900 30 1 0.6687 2.5625 -1.2783 31 1 1.7679 1.4645 -2.1680 32 1 2.2995 4.2167 -1.0562 33 1 3.0106 3.4176 -2.4869 34 1 5.3652 1.9026 -1.8414 35 1 4.6684 5.1869 -0.5210 36 1 6.0338 7.1871 -0.9449 37 1 8.0380 7.0420 -2.3555 38 1 10.8951 6.7679 -5.2805 39 1 7.3075 2.8346 -2.9237 40 1 3.9894 0.6835 -0.6289 41 1 3.9743 1.4009 1.0127 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313424621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:25 Heat of formation + Delta-G solvation = -7.192619 kcal Electronic energy + Delta-G solvation = -18887.868914 eV Core-core repulsion = 16151.765442 eV Total energy + Delta-G solvation = -2736.103472 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -39.14043 -37.59590 -34.87029 -33.30365 -32.06249 -30.14948 -28.95644 -28.16859 -25.91302 -25.00788 -22.88544 -21.09558 -20.93879 -19.95776 -19.29545 -17.42607 -16.15079 -15.72567 -15.56767 -14.83620 -14.65292 -14.38681 -13.82813 -13.28580 -13.16413 -13.02363 -12.52628 -12.47771 -12.36464 -12.17735 -11.76582 -11.56485 -11.25307 -11.24342 -10.88056 -10.79162 -10.68050 -10.58495 -10.50847 -10.37785 -10.32804 -9.68769 -9.45061 -9.18768 -8.84149 -7.54877 -6.84731 -6.39857 -4.40231 2.74437 2.97021 3.21233 3.31237 3.43236 4.08902 4.10400 4.50737 4.56422 4.66056 4.75857 5.06676 5.14167 5.19256 5.46231 5.49659 5.53588 5.59574 5.61840 5.68130 5.75607 5.78511 5.88268 5.98650 6.04634 6.10276 6.12814 6.24366 6.36137 6.37103 6.46633 6.64731 6.85034 6.92953 7.06603 7.37626 7.64047 7.75318 7.86066 8.04818 8.41396 8.50902 8.56913 8.83435 8.96400 10.18315 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.044343 B = 0.003971 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.296420 B = 7049.612768 C = 7223.125352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.092 4.092 4 H 0.075 0.925 5 C -0.116 4.116 6 C -0.141 4.141 7 C 0.156 3.844 8 H 0.076 0.924 9 N -0.753 5.753 10 C 0.236 3.764 11 C -0.300 4.300 12 C -0.049 4.049 13 C -0.273 4.273 14 C 0.126 3.874 15 C -0.452 4.452 16 H 0.088 0.912 17 C 0.085 3.915 18 N -0.815 5.815 19 Si 0.915 3.085 20 H -0.272 1.272 21 H -0.295 1.295 22 H -0.244 1.244 23 C -0.279 4.279 24 C -0.125 4.125 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.389 0.611 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.283 0.717 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.349 -7.373 7.181 19.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.111 4.111 4 H 0.094 0.906 5 C -0.154 4.154 6 C -0.181 4.181 7 C 0.049 3.951 8 H 0.094 0.906 9 N -0.385 5.385 10 C 0.137 3.863 11 C -0.323 4.323 12 C -0.068 4.068 13 C -0.293 4.293 14 C 0.122 3.878 15 C -0.481 4.481 16 H 0.105 0.895 17 C -0.133 4.133 18 N -0.440 5.440 19 Si 0.742 3.258 20 H -0.198 1.198 21 H -0.223 1.223 22 H -0.168 1.168 23 C -0.303 4.303 24 C -0.163 4.163 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.222 0.778 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.088 0.912 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.237 -7.207 7.147 19.149 hybrid contribution -0.206 0.418 -0.378 0.600 sum -16.443 -6.789 6.769 19.034 Atomic orbital electron populations 1.21779 0.96004 1.01293 1.01866 1.21511 0.95744 0.96190 1.01869 1.22130 0.94966 0.95723 0.98259 0.90646 1.22400 0.98514 0.97473 0.96998 1.22736 0.95793 0.97871 1.01670 1.21324 0.85154 0.96269 0.92314 0.90559 1.44687 1.28106 1.09273 1.56455 1.17562 0.89830 0.86170 0.92775 1.19923 1.05553 0.92586 1.14227 1.20366 0.94165 0.96027 0.96209 1.20889 1.01951 0.98188 1.08295 1.17441 0.90350 0.90566 0.89411 1.19448 1.06938 0.99347 1.22358 0.89451 1.26138 0.94905 0.98670 0.93537 1.69714 1.16423 1.30269 1.27569 0.86270 0.83127 0.80168 0.76228 1.19825 1.22268 1.16766 1.20398 0.98956 0.99216 1.11740 1.22679 0.95325 0.97242 1.01045 0.92886 0.92577 0.93062 0.91982 0.92153 0.92110 0.91815 0.91992 0.90950 0.77762 0.88989 0.89138 0.88618 0.90667 0.88622 0.91168 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.76 37.16 0.36 -0.76 16 2 C -0.12 -0.95 5.45 -26.72 -0.15 -1.10 16 3 C -0.09 -0.87 2.92 -88.61 -0.26 -1.13 16 4 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 5 C -0.12 -1.20 5.47 -25.07 -0.14 -1.34 16 6 C -0.14 -1.84 6.59 -25.61 -0.17 -2.00 16 7 C 0.16 2.16 2.89 -66.81 -0.19 1.97 16 8 H 0.08 1.14 6.52 -51.93 -0.34 0.80 16 9 N -0.75 -12.69 5.17 -51.13 -0.26 -12.95 16 10 C 0.24 5.03 6.64 -83.86 -0.56 4.48 16 11 C -0.30 -6.41 9.22 -39.09 -0.36 -6.77 16 12 C -0.05 -1.10 10.01 -39.70 -0.40 -1.50 16 13 C -0.27 -6.88 7.17 -38.83 -0.28 -7.16 16 14 C 0.13 3.32 5.10 -106.85 -0.55 2.78 16 15 C -0.45 -12.69 9.57 -37.74 -0.36 -13.05 16 16 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 17 C 0.09 2.33 5.40 -17.34 -0.09 2.23 16 18 N -0.82 -22.45 13.93 55.55 0.77 -21.68 16 19 Si 0.91 21.75 24.52 -169.99 -4.17 17.58 16 20 H -0.27 -6.29 6.71 56.52 0.38 -5.91 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.24 -5.98 6.86 56.52 0.39 -5.59 16 23 C -0.28 -6.71 9.63 -38.68 -0.37 -7.09 16 24 C -0.12 -1.37 5.98 -25.06 -0.15 -1.52 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.42 7.40 -51.93 -0.38 0.04 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.57 8.01 -51.93 -0.42 0.16 16 31 H 0.06 0.66 8.02 -51.93 -0.42 0.25 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.09 7.92 -51.93 -0.41 0.68 16 34 H 0.39 6.03 8.34 -40.82 -0.34 5.69 16 35 H 0.09 1.75 6.23 -52.49 -0.33 1.43 16 36 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.10 2.42 4.72 -52.49 -0.25 2.17 16 38 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 39 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 40 H 0.07 0.76 7.64 -51.93 -0.40 0.37 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 320.32 15.07 4.83 4.83 Total: -1.00 -28.30 320.32 -9.16 -37.46 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.68 Total: 6.72 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -3.66 Total: -31.96 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.51 Total: -34.63 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.17 Total: 17.58 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.30 -9.16 -37.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313424621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.271 kcal (2) G-P(sol) polarization free energy of solvation -28.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds