Wall clock time and date at job start Mon Mar 30 2020 07:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46801 * 2 1 4 4 H 1.08997 * 110.67318 * 56.77880 * 3 2 1 5 5 C 1.54884 * 110.75347 * 293.54009 * 3 2 1 6 6 C 1.54266 * 104.19482 * 203.56117 * 5 3 2 7 7 C 1.53879 * 106.59770 * 23.61145 * 6 5 3 8 8 H 1.09005 * 110.03321 * 240.66372 * 7 6 5 9 9 N 1.46504 * 110.03118 * 119.28642 * 7 6 5 10 10 C 1.39684 * 120.00115 * 86.45230 * 9 7 6 11 11 C 1.39334 * 119.95299 * 359.72886 * 10 9 7 12 12 C 1.38478 * 120.42523 * 179.97438 * 11 10 9 13 13 C 1.37683 * 120.32566 * 359.97438 * 12 11 10 14 14 C 1.40755 * 119.89166 * 0.02562 * 13 12 11 15 15 C 1.41408 * 120.20672 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00439 * 150.21541 * 15 14 13 17 17 C 1.39932 * 119.99800 * 330.20891 * 15 14 13 18 18 N 1.30835 * 119.99761 * 161.72498 * 17 15 14 19 19 Si 1.86801 * 120.00407 * 341.72977 * 17 15 14 20 20 H 1.48501 * 109.47381 * 95.40696 * 19 17 15 21 21 H 1.48498 * 109.47237 * 215.40976 * 19 17 15 22 22 H 1.48504 * 109.47007 * 335.40910 * 19 17 15 23 23 C 1.38279 * 119.95154 * 179.44793 * 10 9 7 24 24 C 1.54261 * 106.59948 * 0.02562 * 7 6 5 25 25 H 1.08999 * 109.46930 * 300.00523 * 1 2 3 26 26 H 1.09003 * 109.46718 * 60.00281 * 1 2 3 27 27 H 1.08998 * 109.46790 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47504 * 239.99619 * 2 1 3 29 29 H 1.09000 * 109.47019 * 119.99300 * 2 1 3 30 30 H 1.08998 * 110.48733 * 84.88566 * 5 3 2 31 31 H 1.08995 * 110.60211 * 322.29296 * 5 3 2 32 32 H 1.09000 * 110.03598 * 264.32944 * 6 5 3 33 33 H 1.09000 * 110.03668 * 142.89456 * 6 5 3 34 34 H 0.97005 * 119.99661 * 266.18246 * 9 7 6 35 35 H 1.08002 * 119.78517 * 359.97438 * 11 10 9 36 36 H 1.08000 * 119.83451 * 179.97438 * 12 11 10 37 37 H 1.08002 * 120.05285 * 180.02562 * 13 12 11 38 38 H 0.96996 * 119.99661 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.15717 * 0.02562 * 23 10 9 40 40 H 1.09001 * 110.48693 * 95.06473 * 24 7 6 41 41 H 1.08999 * 110.48518 * 217.71122 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6415 1.9916 0.8531 5 6 1.6775 2.1528 -1.3278 6 6 2.7159 3.2876 -1.4455 7 6 3.9309 2.8608 -0.6032 8 1 4.1047 3.5832 0.1944 9 7 5.1195 2.7571 -1.4535 10 6 5.9020 3.8873 -1.7009 11 6 5.5481 5.1142 -1.1432 12 6 6.3171 6.2408 -1.3816 13 6 7.4412 6.1606 -2.1727 14 6 7.8111 4.9281 -2.7430 15 6 8.9646 4.8380 -3.5561 16 1 9.5233 3.9150 -3.6004 17 6 9.3819 5.9450 -4.3034 18 7 10.6057 6.0004 -4.7629 19 14 8.1919 7.3439 -4.6449 20 1 8.3814 8.4134 -3.6323 21 1 8.4502 7.8938 -5.9999 22 1 6.7981 6.8365 -4.5740 23 6 7.0300 3.7859 -2.4943 24 6 3.5887 1.4813 -0.0036 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8898 29 1 1.8934 -0.5137 0.8900 30 1 0.6687 2.5625 -1.2783 31 1 1.7679 1.4645 -2.1680 32 1 2.2995 4.2167 -1.0562 33 1 3.0106 3.4176 -2.4869 34 1 5.3652 1.9026 -1.8414 35 1 4.6684 5.1869 -0.5210 36 1 6.0338 7.1871 -0.9449 37 1 8.0380 7.0420 -2.3555 38 1 10.8951 6.7679 -5.2805 39 1 7.3075 2.8346 -2.9237 40 1 3.9894 0.6835 -0.6289 41 1 3.9743 1.4009 1.0127 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313424621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:24 Heat of formation + Delta-G solvation = -22.071360 kcal Electronic energy + Delta-G solvation = -18888.514105 eV Core-core repulsion = 16151.765442 eV Total energy + Delta-G solvation = -2736.748663 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.37538 -39.11493 -36.30372 -35.04296 -33.18776 -32.05101 -30.19658 -29.28321 -27.19205 -26.85449 -23.65612 -22.82106 -22.54818 -20.92375 -20.54153 -19.24277 -17.77792 -17.02281 -16.85636 -16.42335 -16.25474 -15.38545 -15.20327 -14.57333 -14.44821 -14.16684 -14.03974 -13.99969 -13.82865 -13.42670 -13.07954 -12.81450 -12.79376 -12.50314 -12.24931 -12.17592 -11.93845 -11.79340 -11.57229 -11.40703 -11.38336 -11.25402 -11.22776 -11.03669 -10.51260 -9.46946 -8.87270 -8.04729 -6.49394 0.86806 1.11162 1.29408 1.44009 1.53032 2.17322 2.67328 2.74153 3.58716 3.67150 3.72281 3.94941 4.25639 4.37655 4.39262 4.46505 4.55883 4.61234 4.64976 4.71359 4.73561 4.80701 4.86624 4.95764 4.99886 5.06908 5.10844 5.15693 5.17481 5.25692 5.28778 5.31926 5.41135 5.48888 5.56524 5.61136 5.81279 5.88274 6.01343 6.13679 6.39803 6.72825 6.84082 6.93563 7.12934 8.21910 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.044343 B = 0.003971 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.296420 B = 7049.612768 C = 7223.125352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.084 4.084 4 H 0.084 0.916 5 C -0.110 4.110 6 C -0.140 4.140 7 C 0.148 3.852 8 H 0.073 0.927 9 N -0.744 5.744 10 C 0.245 3.755 11 C -0.289 4.289 12 C -0.048 4.048 13 C -0.296 4.296 14 C 0.108 3.892 15 C -0.490 4.490 16 H 0.051 0.949 17 C 0.048 3.952 18 N -0.855 5.855 19 Si 0.972 3.028 20 H -0.259 1.259 21 H -0.279 1.279 22 H -0.256 1.256 23 C -0.299 4.299 24 C -0.120 4.120 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.395 0.605 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.091 0.909 38 H 0.292 0.708 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.678 -7.192 8.848 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.102 4.102 4 H 0.102 0.898 5 C -0.148 4.148 6 C -0.179 4.179 7 C 0.043 3.957 8 H 0.091 0.909 9 N -0.374 5.374 10 C 0.142 3.858 11 C -0.312 4.312 12 C -0.067 4.067 13 C -0.316 4.316 14 C 0.105 3.895 15 C -0.520 4.520 16 H 0.069 0.931 17 C -0.165 4.165 18 N -0.482 5.482 19 Si 0.796 3.204 20 H -0.185 1.185 21 H -0.206 1.206 22 H -0.180 1.180 23 C -0.323 4.323 24 C -0.158 4.158 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.230 0.770 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.591 -7.064 8.830 22.620 hybrid contribution 0.657 0.204 -0.739 1.010 sum -18.933 -6.860 8.091 21.702 Atomic orbital electron populations 1.21772 0.95252 1.01827 1.02025 1.21490 0.96367 0.95223 1.02045 1.22096 0.93563 0.96597 0.97971 0.89774 1.22362 0.98367 0.96538 0.97504 1.22677 0.96062 0.99267 0.99890 1.21604 0.84044 0.98198 0.91840 0.90941 1.44834 1.28211 1.08276 1.56088 1.17629 0.89060 0.87807 0.91258 1.20341 1.05806 0.91924 1.13102 1.20761 0.92992 0.97978 0.94978 1.20954 1.03413 0.97479 1.09787 1.17589 0.90273 0.92142 0.89538 1.19453 1.08618 0.98795 1.25167 0.93061 1.26814 0.96184 1.00568 0.92965 1.69739 1.17647 1.31699 1.29127 0.85400 0.80236 0.77754 0.77031 1.18453 1.20627 1.17989 1.20510 1.00203 0.98643 1.12987 1.22654 0.96666 0.95297 1.01152 0.92418 0.92715 0.92444 0.92305 0.91561 0.90753 0.91995 0.91422 0.93288 0.77021 0.85877 0.85711 0.89083 0.89732 0.88993 0.91047 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.76 71.98 0.70 -1.06 16 2 C -0.11 -1.51 5.45 30.60 0.17 -1.35 16 3 C -0.08 -1.29 2.92 -9.49 -0.03 -1.32 16 4 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 5 C -0.11 -1.93 5.47 31.67 0.17 -1.76 16 6 C -0.14 -3.23 6.59 31.32 0.21 -3.03 16 7 C 0.15 3.68 2.89 45.71 0.13 3.81 16 8 H 0.07 1.89 6.52 -2.38 -0.02 1.87 16 9 N -0.74 -23.63 5.17 -315.69 -1.63 -25.26 16 10 C 0.25 10.09 6.64 38.16 0.25 10.35 16 11 C -0.29 -11.49 9.22 22.59 0.21 -11.28 16 12 C -0.05 -2.06 10.01 22.20 0.22 -1.84 16 13 C -0.30 -14.77 7.17 22.75 0.16 -14.61 16 14 C 0.11 5.83 5.10 -21.31 -0.11 5.72 16 15 C -0.49 -29.12 9.57 23.46 0.22 -28.89 16 16 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 17 C 0.05 2.73 5.40 85.25 0.46 3.19 16 18 N -0.86 -49.04 13.93 21.82 0.30 -48.74 16 19 Si 0.97 45.42 24.52 68.60 1.68 47.10 16 20 H -0.26 -11.45 6.71 99.48 0.67 -10.78 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 22 H -0.26 -12.30 6.86 99.48 0.68 -11.62 16 23 C -0.30 -14.61 9.63 22.85 0.22 -14.39 16 24 C -0.12 -2.26 5.98 31.68 0.19 -2.07 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.65 7.40 -2.39 -0.02 0.64 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 1.14 8.01 -2.39 -0.02 1.12 16 31 H 0.06 1.13 8.02 -2.39 -0.02 1.11 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 1.37 7.92 -2.39 -0.02 1.36 16 34 H 0.40 11.69 8.34 -92.70 -0.77 10.92 16 35 H 0.12 4.14 6.23 -2.91 -0.02 4.12 16 36 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 37 H 0.09 4.56 4.72 -2.91 -0.01 4.55 16 38 H 0.29 15.03 8.30 -92.71 -0.77 14.26 16 39 H 0.09 4.42 8.06 -2.91 -0.02 4.39 16 40 H 0.07 1.36 7.64 -2.39 -0.02 1.34 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -62.88 320.32 3.71 -59.17 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.17 Total: 26.25 kcal Atomic # 6 Polarization: -61.71 SS G_CDS: 3.19 Total: -58.52 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -1.33 Total: -74.00 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.68 Total: 47.10 kcal Total: -62.88 3.71 -59.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313424621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.102 kcal (2) G-P(sol) polarization free energy of solvation -62.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds