Wall clock time and date at job start Mon Mar 30 2020 07:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 H 1.09003 * 110.43613 * 54.30313 * 3 2 1 5 5 C 1.54892 * 110.48979 * 291.76007 * 3 2 1 6 6 C 1.54890 * 102.74636 * 203.24742 * 5 3 2 7 7 C 1.54258 * 104.19895 * 37.94331 * 6 5 3 8 8 H 1.09003 * 110.03574 * 95.66990 * 7 6 5 9 9 N 1.46497 * 110.03551 * 217.05476 * 7 6 5 10 10 C 1.39688 * 119.99970 * 273.55049 * 9 7 6 11 11 C 1.39338 * 119.94994 * 359.71931 * 10 9 7 12 12 C 1.38479 * 120.42116 * 179.72227 * 11 10 9 13 13 C 1.37689 * 120.32207 * 0.55649 * 12 11 10 14 14 C 1.40745 * 119.89547 * 359.72157 * 13 12 11 15 15 C 1.41416 * 120.20882 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00346 * 204.43989 * 15 14 13 17 17 C 1.39933 * 119.99462 * 24.44295 * 15 14 13 18 18 N 1.30820 * 120.00391 * 17.88727 * 17 15 14 19 19 Si 1.86802 * 119.99821 * 197.88400 * 17 15 14 20 20 H 1.48507 * 109.47090 * 59.99933 * 19 17 15 21 21 H 1.48499 * 109.47407 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47074 * 300.00289 * 19 17 15 23 23 C 1.38278 * 119.95118 * 179.97438 * 10 9 7 24 24 C 1.54220 * 106.63880 * 336.40083 * 7 6 5 25 25 H 1.09002 * 109.46846 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46956 * 299.99160 * 1 2 3 27 27 H 1.08999 * 109.47271 * 59.99854 * 1 2 3 28 28 H 1.08998 * 109.47113 * 240.00070 * 2 1 3 29 29 H 1.08999 * 109.47271 * 120.00146 * 2 1 3 30 30 H 1.08998 * 110.75510 * 321.56211 * 5 3 2 31 31 H 1.08993 * 110.75238 * 84.75019 * 5 3 2 32 32 H 1.09001 * 110.47897 * 156.62187 * 6 5 3 33 33 H 1.08999 * 110.48505 * 279.12859 * 6 5 3 34 34 H 0.97005 * 120.00015 * 93.54184 * 9 7 6 35 35 H 1.07994 * 119.79003 * 0.02562 * 11 10 9 36 36 H 1.07998 * 119.83568 * 180.27836 * 12 11 10 37 37 H 1.08005 * 120.04926 * 179.70039 * 13 12 11 38 38 H 0.97005 * 120.00388 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.16080 * 359.96926 * 23 10 9 40 40 H 1.08992 * 110.14448 * 240.73870 * 24 7 6 41 41 H 1.08998 * 110.08905 * 119.19168 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6048 2.0000 0.8295 5 6 1.7135 2.1330 -1.3475 6 6 2.7668 3.2666 -1.4147 7 6 4.0424 2.6334 -0.8219 8 1 4.6780 2.2546 -1.6223 9 7 4.7728 3.6249 -0.0283 10 6 5.6886 4.4783 -0.6481 11 6 5.9111 4.3817 -2.0202 12 6 6.8126 5.2266 -2.6456 13 6 7.5078 6.1644 -1.9157 14 6 7.2979 6.2698 -0.5280 15 6 8.0080 7.2311 0.2281 16 1 8.1654 7.0776 1.2854 17 6 8.5066 8.3811 -0.3939 18 7 8.0384 8.7503 -1.5583 19 14 9.8407 9.3894 0.4387 20 1 11.0436 8.5435 0.6461 21 1 10.1926 10.5493 -0.4192 22 1 9.3462 9.8770 1.7513 23 6 6.3770 5.4142 0.1018 24 6 3.5803 1.4706 0.0796 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8400 1.4384 -2.1780 31 1 0.7029 2.5410 -1.3376 32 1 2.9359 3.5693 -2.4480 33 1 2.4480 4.1195 -0.8155 34 1 4.6203 3.6889 0.9275 35 1 5.3734 3.6465 -2.6005 36 1 6.9743 5.1464 -3.7104 37 1 8.2134 6.8179 -2.4072 38 1 8.3838 9.5478 -1.9893 39 1 6.2081 5.4875 1.1660 40 1 3.8979 1.6437 1.1078 41 1 3.9902 0.5286 -0.2848 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313424622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:33 Heat of formation + Delta-G solvation = -7.914909 kcal Electronic energy + Delta-G solvation = -18784.938702 eV Core-core repulsion = 16048.803909 eV Total energy + Delta-G solvation = -2736.134793 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -39.00366 -37.33693 -34.77990 -33.25700 -31.80991 -29.70357 -28.79301 -27.83156 -25.65014 -25.10226 -22.77718 -20.99768 -20.52998 -19.98369 -19.29489 -17.36803 -15.74518 -15.63832 -15.12104 -14.72976 -14.56700 -14.30545 -13.82017 -13.21737 -13.09484 -12.76579 -12.61281 -12.17761 -12.12842 -12.02789 -11.51763 -11.37270 -11.18408 -11.02976 -10.94680 -10.73022 -10.58393 -10.53953 -10.48718 -10.42561 -10.17965 -9.69667 -9.26978 -9.14946 -8.65176 -7.33664 -6.66884 -6.13757 -4.26573 2.90880 3.11336 3.14472 3.27574 3.42341 3.99869 4.29478 4.56597 4.69121 4.75330 4.77151 5.09023 5.24980 5.33210 5.51733 5.55002 5.62557 5.71455 5.79858 5.83284 5.84830 5.89705 5.90667 6.05492 6.10774 6.16121 6.37574 6.41251 6.42793 6.51766 6.63851 7.08875 7.15176 7.16195 7.39835 7.46594 7.85942 7.97035 8.19313 8.30927 8.57066 8.71824 8.84410 9.04691 9.17720 10.29192 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.049729 B = 0.003624 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.916210 B = 7724.707370 C = 7973.061277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.092 4.092 4 H 0.072 0.928 5 C -0.118 4.118 6 C -0.138 4.138 7 C 0.158 3.842 8 H 0.075 0.925 9 N -0.756 5.756 10 C 0.225 3.775 11 C -0.301 4.301 12 C -0.076 4.076 13 C -0.201 4.201 14 C 0.142 3.858 15 C -0.466 4.466 16 H 0.074 0.926 17 C 0.078 3.922 18 N -0.793 5.793 19 Si 0.906 3.094 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.267 1.267 23 C -0.291 4.291 24 C -0.126 4.126 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.386 0.614 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.279 0.721 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.992 -11.794 1.376 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.111 4.111 4 H 0.090 0.910 5 C -0.156 4.156 6 C -0.178 4.178 7 C 0.051 3.949 8 H 0.093 0.907 9 N -0.389 5.389 10 C 0.127 3.873 11 C -0.324 4.324 12 C -0.095 4.095 13 C -0.221 4.221 14 C 0.139 3.861 15 C -0.496 4.496 16 H 0.093 0.907 17 C -0.140 4.140 18 N -0.418 5.418 19 Si 0.730 3.270 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.315 4.315 24 C -0.165 4.165 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.219 0.781 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.013 -11.696 1.040 15.431 hybrid contribution 0.470 0.636 0.649 1.023 sum -9.543 -11.059 1.688 14.704 Atomic orbital electron populations 1.21781 0.96078 1.01214 1.01877 1.21569 0.95707 0.96354 1.01770 1.22014 0.95237 0.95599 0.98212 0.90960 1.22539 0.98692 0.97548 0.96772 1.22906 0.95364 0.97955 1.01552 1.21336 0.92081 0.87919 0.93552 0.90702 1.44643 1.46401 1.39122 1.08698 1.17487 0.88625 0.89360 0.91829 1.19874 1.11322 1.08512 0.92706 1.20441 0.96426 0.95621 0.96976 1.21161 1.04624 1.01463 0.94861 1.17324 0.87617 0.89219 0.91962 1.19513 1.30787 1.02869 0.96429 0.90743 1.25881 0.95832 0.97652 0.94595 1.69854 1.35354 1.21710 1.14880 0.86426 0.81686 0.78924 0.79954 1.18893 1.20429 1.19132 1.20396 1.07187 1.06114 0.97768 1.22550 0.95093 0.98542 1.00270 0.93119 0.92912 0.92579 0.91976 0.92247 0.91681 0.91963 0.91669 0.91241 0.78070 0.89644 0.89765 0.86849 0.91029 0.89441 0.91448 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.77 37.16 0.36 -0.84 16 2 C -0.12 -1.02 5.28 -26.73 -0.14 -1.16 16 3 C -0.09 -0.95 2.87 -88.96 -0.25 -1.21 16 4 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.12 -1.29 5.59 -24.74 -0.14 -1.43 16 6 C -0.14 -1.96 6.53 -25.08 -0.16 -2.12 16 7 C 0.16 2.37 2.90 -66.64 -0.19 2.18 16 8 H 0.07 1.22 6.49 -51.93 -0.34 0.88 16 9 N -0.76 -13.74 5.23 -50.96 -0.27 -14.01 16 10 C 0.23 5.16 6.64 -83.85 -0.56 4.60 16 11 C -0.30 -6.97 9.22 -39.08 -0.36 -7.33 16 12 C -0.08 -1.86 10.02 -39.69 -0.40 -2.25 16 13 C -0.20 -5.44 8.69 -38.84 -0.34 -5.78 16 14 C 0.14 3.93 5.57 -106.85 -0.60 3.33 16 15 C -0.47 -12.80 9.05 -37.74 -0.34 -13.14 16 16 H 0.07 1.97 7.91 -52.49 -0.42 1.55 16 17 C 0.08 2.02 5.14 -17.35 -0.09 1.93 16 18 N -0.79 -21.15 10.95 55.55 0.61 -20.54 16 19 Si 0.91 19.16 29.59 -169.99 -5.03 14.13 16 20 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 C -0.29 -7.39 9.63 -38.68 -0.37 -7.76 16 24 C -0.13 -1.50 6.16 -25.43 -0.16 -1.66 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.44 7.45 -51.93 -0.39 0.06 16 28 H 0.06 0.54 8.06 -51.93 -0.42 0.12 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.68 8.00 -51.93 -0.42 0.26 16 31 H 0.06 0.64 8.02 -51.93 -0.42 0.22 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.07 8.06 -51.93 -0.42 0.66 16 34 H 0.39 6.47 8.31 -40.82 -0.34 6.13 16 35 H 0.09 1.79 6.22 -52.49 -0.33 1.46 16 36 H 0.08 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.11 3.17 6.15 -52.48 -0.32 2.84 16 38 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 39 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 40 H 0.07 0.80 7.62 -51.93 -0.40 0.41 16 41 H 0.07 0.76 7.84 -51.93 -0.41 0.36 16 LS Contribution 325.43 15.07 4.90 4.90 Total: -1.00 -28.17 325.43 -10.21 -38.38 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.69 Total: 9.78 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: -3.74 Total: -32.65 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.34 Total: -34.54 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.17 -10.21 -38.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313424622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.469 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds