Wall clock time and date at job start Mon Mar 30 2020 07:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 H 1.09003 * 110.43613 * 54.30313 * 3 2 1 5 5 C 1.54892 * 110.48979 * 291.76007 * 3 2 1 6 6 C 1.54890 * 102.74636 * 203.24742 * 5 3 2 7 7 C 1.54258 * 104.19895 * 37.94331 * 6 5 3 8 8 H 1.09003 * 110.03574 * 95.66990 * 7 6 5 9 9 N 1.46497 * 110.03551 * 217.05476 * 7 6 5 10 10 C 1.39688 * 119.99970 * 273.55049 * 9 7 6 11 11 C 1.39338 * 119.94994 * 359.71931 * 10 9 7 12 12 C 1.38479 * 120.42116 * 179.72227 * 11 10 9 13 13 C 1.37689 * 120.32207 * 0.55649 * 12 11 10 14 14 C 1.40745 * 119.89547 * 359.72157 * 13 12 11 15 15 C 1.41416 * 120.20882 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00346 * 204.43989 * 15 14 13 17 17 C 1.39933 * 119.99462 * 24.44295 * 15 14 13 18 18 N 1.30820 * 120.00391 * 17.88727 * 17 15 14 19 19 Si 1.86802 * 119.99821 * 197.88400 * 17 15 14 20 20 H 1.48507 * 109.47090 * 59.99933 * 19 17 15 21 21 H 1.48499 * 109.47407 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47074 * 300.00289 * 19 17 15 23 23 C 1.38278 * 119.95118 * 179.97438 * 10 9 7 24 24 C 1.54220 * 106.63880 * 336.40083 * 7 6 5 25 25 H 1.09002 * 109.46846 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46956 * 299.99160 * 1 2 3 27 27 H 1.08999 * 109.47271 * 59.99854 * 1 2 3 28 28 H 1.08998 * 109.47113 * 240.00070 * 2 1 3 29 29 H 1.08999 * 109.47271 * 120.00146 * 2 1 3 30 30 H 1.08998 * 110.75510 * 321.56211 * 5 3 2 31 31 H 1.08993 * 110.75238 * 84.75019 * 5 3 2 32 32 H 1.09001 * 110.47897 * 156.62187 * 6 5 3 33 33 H 1.08999 * 110.48505 * 279.12859 * 6 5 3 34 34 H 0.97005 * 120.00015 * 93.54184 * 9 7 6 35 35 H 1.07994 * 119.79003 * 0.02562 * 11 10 9 36 36 H 1.07998 * 119.83568 * 180.27836 * 12 11 10 37 37 H 1.08005 * 120.04926 * 179.70039 * 13 12 11 38 38 H 0.97005 * 120.00388 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.16080 * 359.96926 * 23 10 9 40 40 H 1.08992 * 110.14448 * 240.73870 * 24 7 6 41 41 H 1.08998 * 110.08905 * 119.19168 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6048 2.0000 0.8295 5 6 1.7135 2.1330 -1.3475 6 6 2.7668 3.2666 -1.4147 7 6 4.0424 2.6334 -0.8219 8 1 4.6780 2.2546 -1.6223 9 7 4.7728 3.6249 -0.0283 10 6 5.6886 4.4783 -0.6481 11 6 5.9111 4.3817 -2.0202 12 6 6.8126 5.2266 -2.6456 13 6 7.5078 6.1644 -1.9157 14 6 7.2979 6.2698 -0.5280 15 6 8.0080 7.2311 0.2281 16 1 8.1654 7.0776 1.2854 17 6 8.5066 8.3811 -0.3939 18 7 8.0384 8.7503 -1.5583 19 14 9.8407 9.3894 0.4387 20 1 11.0436 8.5435 0.6461 21 1 10.1926 10.5493 -0.4192 22 1 9.3462 9.8770 1.7513 23 6 6.3770 5.4142 0.1018 24 6 3.5803 1.4706 0.0796 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8400 1.4384 -2.1780 31 1 0.7029 2.5410 -1.3376 32 1 2.9359 3.5693 -2.4480 33 1 2.4480 4.1195 -0.8155 34 1 4.6203 3.6889 0.9275 35 1 5.3734 3.6465 -2.6005 36 1 6.9743 5.1464 -3.7104 37 1 8.2134 6.8179 -2.4072 38 1 8.3838 9.5478 -1.9893 39 1 6.2081 5.4875 1.1660 40 1 3.8979 1.6437 1.1078 41 1 3.9902 0.5286 -0.2848 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313424622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:31 Heat of formation + Delta-G solvation = -21.271305 kcal Electronic energy + Delta-G solvation = -18785.517879 eV Core-core repulsion = 16048.803909 eV Total energy + Delta-G solvation = -2736.713970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.27426 -38.97316 -36.31575 -34.88498 -33.03764 -31.66794 -30.01566 -29.10732 -27.19184 -26.85670 -23.60563 -22.71322 -22.33833 -21.04125 -20.52186 -19.22033 -17.47102 -16.97878 -16.65782 -16.33318 -15.74128 -15.58745 -15.01873 -14.60766 -14.47024 -14.07203 -13.95572 -13.82563 -13.63629 -13.19574 -12.92264 -12.78493 -12.72297 -12.37796 -12.25454 -12.11166 -11.98964 -11.72232 -11.59577 -11.42586 -11.34894 -11.24275 -11.15407 -11.02973 -10.40153 -9.33649 -8.60627 -7.91224 -6.32380 1.05869 1.35219 1.38890 1.50274 1.61001 2.22616 2.80642 2.83195 3.64576 3.71619 3.87969 3.89825 4.31842 4.40925 4.47486 4.50199 4.56015 4.63957 4.65062 4.74527 4.78953 4.89274 4.97133 5.05655 5.12837 5.13729 5.16727 5.19935 5.25715 5.29128 5.34370 5.39896 5.44730 5.47818 5.61098 5.63168 5.97637 6.03667 6.21015 6.32537 6.64258 6.91269 7.02556 7.08020 7.27246 8.37624 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.049729 B = 0.003624 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.916210 B = 7724.707370 C = 7973.061277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.086 4.086 4 H 0.071 0.929 5 C -0.108 4.108 6 C -0.138 4.138 7 C 0.150 3.850 8 H 0.066 0.934 9 N -0.747 5.747 10 C 0.236 3.764 11 C -0.303 4.303 12 C -0.076 4.076 13 C -0.234 4.234 14 C 0.113 3.887 15 C -0.505 4.505 16 H 0.072 0.928 17 C 0.036 3.964 18 N -0.824 5.824 19 Si 0.982 3.018 20 H -0.261 1.261 21 H -0.266 1.266 22 H -0.260 1.260 23 C -0.315 4.315 24 C -0.120 4.120 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.393 0.607 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.287 0.713 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.959 -13.170 1.680 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.105 4.105 4 H 0.089 0.911 5 C -0.146 4.146 6 C -0.178 4.178 7 C 0.045 3.955 8 H 0.084 0.916 9 N -0.378 5.378 10 C 0.134 3.866 11 C -0.326 4.326 12 C -0.095 4.095 13 C -0.255 4.255 14 C 0.110 3.890 15 C -0.535 4.535 16 H 0.090 0.910 17 C -0.179 4.179 18 N -0.450 5.450 19 Si 0.803 3.197 20 H -0.185 1.185 21 H -0.191 1.191 22 H -0.184 1.184 23 C -0.339 4.339 24 C -0.158 4.158 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.228 0.772 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.024 -13.112 1.351 17.184 hybrid contribution 0.653 0.958 0.520 1.271 sum -10.371 -12.154 1.871 16.087 Atomic orbital electron populations 1.21778 0.95391 1.01881 1.01881 1.21539 0.96267 0.94965 1.02276 1.21976 0.93943 0.96808 0.97723 0.91085 1.22501 0.98076 0.96454 0.97584 1.22842 0.95967 0.98577 1.00384 1.21599 0.91901 0.88205 0.93801 0.91585 1.44755 1.45180 1.38493 1.09378 1.17552 0.88311 0.88867 0.91856 1.20156 1.10850 1.08503 0.93060 1.20733 0.95825 0.94813 0.98121 1.21097 1.06204 1.03068 0.95118 1.17692 0.88496 0.90133 0.92634 1.19786 1.32833 1.04199 0.96634 0.90997 1.26772 0.97585 0.98360 0.95197 1.69915 1.36398 1.22448 1.16227 0.85266 0.78129 0.77316 0.79015 1.18521 1.19057 1.18375 1.20521 1.07999 1.07210 0.98145 1.22509 0.96285 0.97442 0.99539 0.92185 0.92939 0.92577 0.91540 0.91718 0.90579 0.90930 0.92711 0.92855 0.77217 0.87134 0.87516 0.88619 0.90260 0.89284 0.91322 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.77 71.98 0.70 -1.25 16 2 C -0.11 -1.62 5.28 30.59 0.16 -1.46 16 3 C -0.09 -1.54 2.87 -9.72 -0.03 -1.57 16 4 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 5 C -0.11 -2.10 5.59 31.89 0.18 -1.92 16 6 C -0.14 -3.71 6.53 31.67 0.21 -3.50 16 7 C 0.15 4.26 2.90 45.83 0.13 4.40 16 8 H 0.07 2.02 6.49 -2.39 -0.02 2.00 16 9 N -0.75 -26.45 5.23 -315.15 -1.65 -28.09 16 10 C 0.24 10.76 6.64 38.16 0.25 11.02 16 11 C -0.30 -13.86 9.22 22.59 0.21 -13.65 16 12 C -0.08 -3.76 10.02 22.20 0.22 -3.54 16 13 C -0.23 -13.16 8.69 22.75 0.20 -12.96 16 14 C 0.11 6.52 5.57 -21.31 -0.12 6.40 16 15 C -0.50 -28.77 9.05 23.46 0.21 -28.56 16 16 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 17 C 0.04 1.89 5.14 85.25 0.44 2.33 16 18 N -0.82 -45.18 10.95 21.82 0.24 -44.94 16 19 Si 0.98 39.74 29.59 68.60 2.03 41.77 16 20 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 23 C -0.31 -16.40 9.63 22.85 0.22 -16.18 16 24 C -0.12 -2.55 6.16 31.44 0.19 -2.35 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.72 7.45 -2.39 -0.02 0.70 16 28 H 0.07 0.92 8.06 -2.39 -0.02 0.90 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 1.34 8.00 -2.39 -0.02 1.32 16 31 H 0.07 1.29 8.02 -2.39 -0.02 1.27 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.05 1.60 8.06 -2.39 -0.02 1.58 16 34 H 0.39 12.82 8.31 -92.70 -0.77 12.05 16 35 H 0.11 4.45 6.22 -2.91 -0.02 4.43 16 36 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 37 H 0.10 5.60 6.15 -2.91 -0.02 5.59 16 38 H 0.29 14.19 8.30 -92.70 -0.77 13.42 16 39 H 0.09 4.45 8.06 -2.91 -0.02 4.43 16 40 H 0.07 1.47 7.62 -2.39 -0.02 1.45 16 41 H 0.08 1.56 7.84 -2.39 -0.02 1.54 16 Total: -1.00 -62.26 325.43 4.04 -58.22 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: 0.23 Total: 35.84 kcal Atomic # 6 Polarization: -65.98 SS G_CDS: 3.18 Total: -62.80 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -1.41 Total: -73.04 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -62.26 4.04 -58.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313424622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.949 kcal (2) G-P(sol) polarization free energy of solvation -62.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds