Wall clock time and date at job start Mon Mar 30 2020 07:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47103 * 2 1 4 4 H 1.08998 * 110.43520 * 303.90939 * 3 2 1 5 5 C 1.54269 * 110.48821 * 66.45246 * 3 2 1 6 6 C 1.53872 * 106.59774 * 142.28715 * 5 3 2 7 7 C 1.54257 * 106.60146 * 0.02562 * 6 5 3 8 8 H 1.09004 * 110.48994 * 95.19903 * 7 6 5 9 9 N 1.46505 * 110.48582 * 217.71239 * 7 6 5 10 10 C 1.39690 * 119.99772 * 273.54166 * 9 7 6 11 11 C 1.39340 * 119.94992 * 359.97438 * 10 9 7 12 12 C 1.38478 * 120.41999 * 180.02562 * 11 10 9 13 13 C 1.37686 * 120.32742 * 359.97438 * 12 11 10 14 14 C 1.40748 * 119.89390 * 0.02562 * 13 12 11 15 15 C 1.41409 * 120.21058 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99649 * 335.30300 * 15 14 13 17 17 C 1.39932 * 119.99843 * 155.29474 * 15 14 13 18 18 N 1.30827 * 120.00019 * 342.24596 * 17 15 14 19 19 Si 1.86801 * 119.99634 * 162.24276 * 17 15 14 20 20 H 1.48502 * 109.47234 * 90.00075 * 19 17 15 21 21 H 1.48492 * 109.47082 * 210.00332 * 19 17 15 22 22 H 1.48504 * 109.47064 * 330.00354 * 19 17 15 23 23 C 1.38269 * 119.95098 * 180.02562 * 10 9 7 24 24 C 1.54888 * 104.19605 * 336.38844 * 7 6 5 25 25 H 1.09004 * 109.47096 * 60.00043 * 1 2 3 26 26 H 1.09004 * 109.47160 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47751 * 300.00426 * 1 2 3 28 28 H 1.08994 * 109.47423 * 239.99921 * 2 1 3 29 29 H 1.08998 * 109.46800 * 119.99668 * 2 1 3 30 30 H 1.09001 * 110.02778 * 23.00298 * 5 3 2 31 31 H 1.08998 * 110.07500 * 261.59341 * 5 3 2 32 32 H 1.09007 * 110.03500 * 240.71132 * 6 5 3 33 33 H 1.09005 * 110.07057 * 119.30798 * 6 5 3 34 34 H 0.96993 * 120.00107 * 93.54633 * 9 7 6 35 35 H 1.07998 * 119.78831 * 359.97438 * 11 10 9 36 36 H 1.07998 * 119.83342 * 180.02562 * 12 11 10 37 37 H 1.07995 * 120.05686 * 179.97438 * 13 12 11 38 38 H 0.97000 * 119.99624 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.16475 * 0.25298 * 23 10 9 40 40 H 1.09006 * 110.76087 * 156.25976 * 24 7 6 41 41 H 1.09003 * 110.75664 * 279.62470 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6296 1.9912 -0.8477 5 6 1.6756 2.1440 1.3248 6 6 2.8695 3.0441 1.6883 7 6 3.9173 2.8588 0.5715 8 1 3.8134 3.6390 -0.1825 9 7 5.2709 2.8661 1.1321 10 6 5.9423 4.0766 1.3202 11 6 5.3239 5.2762 0.9739 12 6 5.9807 6.4817 1.1557 13 6 7.2529 6.5078 1.6817 14 6 7.8902 5.3041 2.0363 15 6 9.1969 5.3231 2.5765 16 1 9.8570 6.1510 2.3640 17 6 9.6345 4.2693 3.3866 18 7 8.7646 3.4565 3.9291 19 14 11.4606 4.0231 3.6931 20 1 11.8681 4.7897 4.8979 21 1 11.7363 2.5799 3.9081 22 1 12.2293 4.5040 2.5170 23 6 7.2199 4.0824 1.8488 24 6 3.5880 1.4707 -0.0317 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.5147 1.4029 2.1077 31 1 0.7784 2.7488 1.1934 32 1 3.2880 2.7400 2.6478 33 1 2.5524 4.0861 1.7331 34 1 5.7008 2.0306 1.3725 35 1 4.3263 5.2658 0.5602 36 1 5.4923 7.4059 0.8844 37 1 7.7612 7.4504 1.8213 38 1 9.0680 2.7263 4.4909 39 1 7.7021 3.1528 2.1131 40 1 3.9550 1.3974 -1.0555 41 1 4.0013 0.6732 0.5858 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313424623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:38 Heat of formation + Delta-G solvation = -8.909176 kcal Electronic energy + Delta-G solvation = -18943.069089 eV Core-core repulsion = 16206.891182 eV Total energy + Delta-G solvation = -2736.177907 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.94202 -37.34329 -34.67531 -33.31540 -31.94455 -29.40154 -28.77559 -27.94241 -25.60879 -25.10178 -22.75129 -21.23607 -20.36562 -19.89391 -19.11128 -17.15015 -16.08912 -15.66386 -15.19697 -14.74524 -14.49594 -14.12671 -13.57475 -13.29576 -13.11169 -12.73297 -12.59469 -12.23796 -12.08783 -11.96875 -11.51413 -11.36734 -11.19825 -11.00473 -10.90376 -10.75862 -10.60854 -10.47987 -10.43348 -10.34756 -10.12564 -9.56119 -9.38968 -9.18350 -8.68687 -7.25605 -6.68559 -6.09470 -4.26465 2.90620 3.11868 3.17014 3.28272 3.38188 4.01079 4.29456 4.64956 4.67723 4.78701 4.89929 5.14666 5.24331 5.28747 5.57648 5.61189 5.64626 5.72612 5.78862 5.86818 5.88000 5.90697 5.99781 6.08900 6.15087 6.21856 6.34140 6.38975 6.51259 6.55859 6.69339 6.94834 7.17209 7.19358 7.43686 7.50527 7.88038 8.01916 8.17072 8.22643 8.54797 8.78901 8.89827 9.06234 9.17845 10.30152 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.029777 B = 0.004279 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.083265 B = 6541.489241 C = 7182.698495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.091 4.091 4 H 0.073 0.927 5 C -0.116 4.116 6 C -0.141 4.141 7 C 0.159 3.841 8 H 0.076 0.924 9 N -0.753 5.753 10 C 0.217 3.783 11 C -0.298 4.298 12 C -0.067 4.067 13 C -0.259 4.259 14 C 0.139 3.861 15 C -0.466 4.466 16 H 0.075 0.925 17 C 0.078 3.922 18 N -0.793 5.793 19 Si 0.903 3.097 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.231 4.231 24 C -0.126 4.126 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.388 0.612 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.277 0.723 39 H 0.115 0.885 40 H 0.066 0.934 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.363 -6.898 -5.224 14.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.110 4.110 4 H 0.092 0.908 5 C -0.154 4.154 6 C -0.181 4.181 7 C 0.052 3.948 8 H 0.094 0.906 9 N -0.385 5.385 10 C 0.118 3.882 11 C -0.321 4.321 12 C -0.086 4.086 13 C -0.279 4.279 14 C 0.136 3.864 15 C -0.496 4.496 16 H 0.093 0.907 17 C -0.139 4.139 18 N -0.419 5.419 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.255 4.255 24 C -0.164 4.164 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.222 0.778 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.133 0.867 40 H 0.085 0.915 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.534 -7.019 -5.133 14.444 hybrid contribution 0.903 -0.416 0.437 1.086 sum -10.631 -7.435 -4.695 13.796 Atomic orbital electron populations 1.21784 0.96077 1.01223 1.01862 1.21552 0.95667 0.96277 1.01844 1.21949 0.95144 0.95687 0.98175 0.90835 1.22179 0.98057 0.98419 0.96730 1.22698 0.95598 0.99550 1.00206 1.21457 0.82933 0.96281 0.94102 0.90581 1.44496 1.15014 1.06121 1.72895 1.17658 0.91691 0.84707 0.94135 1.19902 1.00767 0.91775 1.19667 1.20284 0.94870 0.95305 0.98108 1.20853 0.96326 0.96841 1.13917 1.17316 0.91913 0.90198 0.86973 1.19534 0.98501 1.05023 1.26513 0.90666 1.25865 0.99391 0.94741 0.93913 1.69872 1.35530 1.13675 1.22789 0.86411 0.83256 0.78073 0.79508 1.19643 1.20265 1.18558 1.20705 0.94313 0.98935 1.11582 1.22782 0.95130 0.97530 1.00952 0.92900 0.93116 0.92586 0.92183 0.91985 0.92055 0.92314 0.91349 0.91975 0.77819 0.89605 0.89743 0.89479 0.91268 0.86671 0.91494 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.76 37.16 0.36 -0.89 16 2 C -0.12 -1.08 5.32 -26.73 -0.14 -1.22 16 3 C -0.09 -0.97 2.90 -88.97 -0.26 -1.23 16 4 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 5 C -0.12 -1.34 5.51 -25.61 -0.14 -1.48 16 6 C -0.14 -2.09 6.54 -25.62 -0.17 -2.25 16 7 C 0.16 2.50 2.81 -66.27 -0.19 2.31 16 8 H 0.08 1.26 6.60 -51.93 -0.34 0.92 16 9 N -0.75 -14.48 5.29 -50.62 -0.27 -14.75 16 10 C 0.22 5.11 6.64 -83.86 -0.56 4.55 16 11 C -0.30 -6.88 9.23 -39.08 -0.36 -7.24 16 12 C -0.07 -1.58 10.01 -39.69 -0.40 -1.97 16 13 C -0.26 -6.67 9.79 -38.84 -0.38 -7.05 16 14 C 0.14 3.84 5.57 -106.85 -0.60 3.25 16 15 C -0.47 -12.77 9.05 -37.74 -0.34 -13.11 16 16 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 17 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 18 N -0.79 -20.95 10.97 55.55 0.61 -20.34 16 19 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 23 C -0.23 -6.13 8.52 -38.68 -0.33 -6.46 16 24 C -0.13 -1.58 5.92 -24.75 -0.15 -1.72 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.46 7.48 -51.93 -0.39 0.08 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.59 8.05 -51.93 -0.42 0.17 16 30 H 0.06 0.69 7.77 -51.93 -0.40 0.28 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.13 8.04 -51.92 -0.42 0.71 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.39 7.16 8.54 -40.82 -0.35 6.82 16 35 H 0.09 1.79 6.26 -52.49 -0.33 1.46 16 36 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 38 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 39 H 0.12 3.14 6.19 -52.48 -0.32 2.82 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.87 7.94 -51.93 -0.41 0.46 16 LS Contribution 326.05 15.07 4.91 4.91 Total: -1.00 -27.97 326.05 -10.24 -38.21 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -6.74 Total: 10.48 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: -3.73 Total: -32.59 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.34 Total: -35.09 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.97 -10.24 -38.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313424623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.302 kcal (2) G-P(sol) polarization free energy of solvation -27.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds