Wall clock time and date at job start Mon Mar 30 2020 07:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47103 * 2 1 4 4 H 1.08998 * 110.43520 * 303.90939 * 3 2 1 5 5 C 1.54269 * 110.48821 * 66.45246 * 3 2 1 6 6 C 1.53872 * 106.59774 * 142.28715 * 5 3 2 7 7 C 1.54257 * 106.60146 * 0.02562 * 6 5 3 8 8 H 1.09004 * 110.48994 * 95.19903 * 7 6 5 9 9 N 1.46505 * 110.48582 * 217.71239 * 7 6 5 10 10 C 1.39690 * 119.99772 * 273.54166 * 9 7 6 11 11 C 1.39340 * 119.94992 * 359.97438 * 10 9 7 12 12 C 1.38478 * 120.41999 * 180.02562 * 11 10 9 13 13 C 1.37686 * 120.32742 * 359.97438 * 12 11 10 14 14 C 1.40748 * 119.89390 * 0.02562 * 13 12 11 15 15 C 1.41409 * 120.21058 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99649 * 335.30300 * 15 14 13 17 17 C 1.39932 * 119.99843 * 155.29474 * 15 14 13 18 18 N 1.30827 * 120.00019 * 342.24596 * 17 15 14 19 19 Si 1.86801 * 119.99634 * 162.24276 * 17 15 14 20 20 H 1.48502 * 109.47234 * 90.00075 * 19 17 15 21 21 H 1.48492 * 109.47082 * 210.00332 * 19 17 15 22 22 H 1.48504 * 109.47064 * 330.00354 * 19 17 15 23 23 C 1.38269 * 119.95098 * 180.02562 * 10 9 7 24 24 C 1.54888 * 104.19605 * 336.38844 * 7 6 5 25 25 H 1.09004 * 109.47096 * 60.00043 * 1 2 3 26 26 H 1.09004 * 109.47160 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47751 * 300.00426 * 1 2 3 28 28 H 1.08994 * 109.47423 * 239.99921 * 2 1 3 29 29 H 1.08998 * 109.46800 * 119.99668 * 2 1 3 30 30 H 1.09001 * 110.02778 * 23.00298 * 5 3 2 31 31 H 1.08998 * 110.07500 * 261.59341 * 5 3 2 32 32 H 1.09007 * 110.03500 * 240.71132 * 6 5 3 33 33 H 1.09005 * 110.07057 * 119.30798 * 6 5 3 34 34 H 0.96993 * 120.00107 * 93.54633 * 9 7 6 35 35 H 1.07998 * 119.78831 * 359.97438 * 11 10 9 36 36 H 1.07998 * 119.83342 * 180.02562 * 12 11 10 37 37 H 1.07995 * 120.05686 * 179.97438 * 13 12 11 38 38 H 0.97000 * 119.99624 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.16475 * 0.25298 * 23 10 9 40 40 H 1.09006 * 110.76087 * 156.25976 * 24 7 6 41 41 H 1.09003 * 110.75664 * 279.62470 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6296 1.9912 -0.8477 5 6 1.6756 2.1440 1.3248 6 6 2.8695 3.0441 1.6883 7 6 3.9173 2.8588 0.5715 8 1 3.8134 3.6390 -0.1825 9 7 5.2709 2.8661 1.1321 10 6 5.9423 4.0766 1.3202 11 6 5.3239 5.2762 0.9739 12 6 5.9807 6.4817 1.1557 13 6 7.2529 6.5078 1.6817 14 6 7.8902 5.3041 2.0363 15 6 9.1969 5.3231 2.5765 16 1 9.8570 6.1510 2.3640 17 6 9.6345 4.2693 3.3866 18 7 8.7646 3.4565 3.9291 19 14 11.4606 4.0231 3.6931 20 1 11.8681 4.7897 4.8979 21 1 11.7363 2.5799 3.9081 22 1 12.2293 4.5040 2.5170 23 6 7.2199 4.0824 1.8488 24 6 3.5880 1.4707 -0.0317 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.5147 1.4029 2.1077 31 1 0.7784 2.7488 1.1934 32 1 3.2880 2.7400 2.6478 33 1 2.5524 4.0861 1.7331 34 1 5.7008 2.0306 1.3725 35 1 4.3263 5.2658 0.5602 36 1 5.4923 7.4059 0.8844 37 1 7.7612 7.4504 1.8213 38 1 9.0680 2.7263 4.4909 39 1 7.7021 3.1528 2.1131 40 1 3.9550 1.3974 -1.0555 41 1 4.0013 0.6732 0.5858 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313424623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:37 Heat of formation + Delta-G solvation = -22.077392 kcal Electronic energy + Delta-G solvation = -18943.640106 eV Core-core repulsion = 16206.891182 eV Total energy + Delta-G solvation = -2736.748924 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.24501 -38.98174 -36.19728 -35.05240 -33.14759 -31.35148 -30.08567 -29.19884 -27.17391 -26.82360 -23.62833 -22.96016 -22.07995 -21.16264 -20.32631 -19.00666 -17.66746 -16.97570 -16.63344 -16.39632 -16.20157 -15.15722 -14.92219 -14.59843 -14.34108 -14.12003 -14.06484 -13.81482 -13.71662 -13.19142 -12.84449 -12.75584 -12.65017 -12.51345 -12.27810 -12.09475 -12.04193 -11.76880 -11.51374 -11.33741 -11.30680 -11.28286 -11.21743 -11.04569 -10.44011 -9.24362 -8.61587 -7.88235 -6.31551 1.09228 1.34237 1.38314 1.51053 1.59232 2.23295 2.79319 2.85565 3.65503 3.71267 3.89069 3.93960 4.25358 4.37468 4.44263 4.51744 4.53345 4.63317 4.70393 4.76056 4.81763 4.86739 4.95572 5.01015 5.06880 5.16296 5.19674 5.21108 5.25932 5.31660 5.32166 5.36251 5.46791 5.52063 5.60438 5.63634 5.97828 6.12240 6.22097 6.29156 6.59538 6.95686 7.06477 7.09220 7.27213 8.38860 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.029777 B = 0.004279 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.083265 B = 6541.489241 C = 7182.698495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.083 4.083 4 H 0.083 0.917 5 C -0.108 4.108 6 C -0.139 4.139 7 C 0.151 3.849 8 H 0.071 0.929 9 N -0.748 5.748 10 C 0.222 3.778 11 C -0.301 4.301 12 C -0.063 4.063 13 C -0.287 4.287 14 C 0.109 3.891 15 C -0.505 4.505 16 H 0.071 0.929 17 C 0.037 3.963 18 N -0.823 5.823 19 Si 0.980 3.020 20 H -0.263 1.263 21 H -0.266 1.266 22 H -0.261 1.261 23 C -0.260 4.260 24 C -0.119 4.119 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.390 0.610 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.285 0.715 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.633 -7.848 -5.960 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.102 4.102 4 H 0.101 0.899 5 C -0.146 4.146 6 C -0.178 4.178 7 C 0.045 3.955 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.120 3.880 11 C -0.324 4.324 12 C -0.082 4.082 13 C -0.308 4.308 14 C 0.106 3.894 15 C -0.535 4.535 16 H 0.089 0.911 17 C -0.178 4.178 18 N -0.449 5.449 19 Si 0.800 3.200 20 H -0.187 1.187 21 H -0.190 1.190 22 H -0.184 1.184 23 C -0.284 4.284 24 C -0.157 4.157 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.224 0.776 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.092 0.908 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.849 -7.988 -5.881 16.232 hybrid contribution 1.169 -0.122 0.636 1.336 sum -11.680 -8.110 -5.245 15.156 Atomic orbital electron populations 1.21773 0.95091 1.01898 1.02069 1.21526 0.96481 0.95023 1.02059 1.21926 0.93477 0.96842 0.97908 0.89885 1.22134 0.96975 0.98113 0.97377 1.22628 0.96556 0.99900 0.98728 1.21727 0.81079 0.98336 0.94308 0.91063 1.44632 1.16187 1.04842 1.72153 1.17776 0.90982 0.86600 0.92592 1.20220 1.01725 0.91344 1.19064 1.20650 0.94026 0.96972 0.96557 1.21017 0.97651 0.96471 1.15662 1.17715 0.92678 0.91336 0.87690 1.19795 0.99111 1.06333 1.28267 0.91069 1.26720 1.04251 0.93822 0.92982 1.69930 1.37741 1.14123 1.23059 0.85255 0.76789 0.78498 0.79414 1.18737 1.19007 1.18450 1.20637 0.95893 0.98005 1.13899 1.22749 0.96723 0.95246 1.00961 0.92389 0.92297 0.92685 0.91511 0.92318 0.91537 0.90873 0.93533 0.92712 0.77584 0.87073 0.86471 0.89261 0.90495 0.88388 0.90807 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.76 71.98 0.70 -1.33 16 2 C -0.11 -1.78 5.32 30.59 0.16 -1.61 16 3 C -0.08 -1.54 2.90 -9.73 -0.03 -1.57 16 4 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 5 C -0.11 -2.24 5.51 31.32 0.17 -2.07 16 6 C -0.14 -3.94 6.54 31.31 0.20 -3.73 16 7 C 0.15 4.54 2.81 46.06 0.13 4.67 16 8 H 0.07 2.24 6.60 -2.39 -0.02 2.22 16 9 N -0.75 -28.68 5.29 -314.05 -1.66 -30.34 16 10 C 0.22 10.56 6.64 38.16 0.25 10.81 16 11 C -0.30 -13.65 9.23 22.59 0.21 -13.44 16 12 C -0.06 -2.96 10.01 22.20 0.22 -2.73 16 13 C -0.29 -15.16 9.79 22.75 0.22 -14.94 16 14 C 0.11 6.24 5.57 -21.31 -0.12 6.13 16 15 C -0.51 -28.80 9.05 23.46 0.21 -28.59 16 16 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 17 C 0.04 1.94 5.14 85.25 0.44 2.38 16 18 N -0.82 -44.63 10.97 21.82 0.24 -44.39 16 19 Si 0.98 39.73 29.59 68.60 2.03 41.76 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 23 C -0.26 -14.28 8.52 22.86 0.19 -14.08 16 24 C -0.12 -2.74 5.92 31.88 0.19 -2.55 16 25 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.05 0.75 7.48 -2.39 -0.02 0.73 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.97 8.05 -2.39 -0.02 0.95 16 30 H 0.07 1.33 7.77 -2.39 -0.02 1.32 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.52 8.04 -2.38 -0.02 1.50 16 33 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.39 14.54 8.54 -92.71 -0.79 13.75 16 35 H 0.11 4.42 6.26 -2.91 -0.02 4.41 16 36 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 37 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.28 13.94 8.30 -92.71 -0.77 13.18 16 39 H 0.10 5.61 6.19 -2.91 -0.02 5.59 16 40 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.07 1.63 7.94 -2.39 -0.02 1.61 16 Total: -1.00 -61.80 326.05 3.98 -57.81 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: 0.21 Total: 37.81 kcal Atomic # 6 Polarization: -65.81 SS G_CDS: 3.17 Total: -62.65 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -1.42 Total: -74.73 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -61.80 3.98 -57.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313424623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.737 kcal (2) G-P(sol) polarization free energy of solvation -61.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds