Wall clock time and date at job start Mon Mar 30 2020 07:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47066 * 2 1 4 4 H 1.08999 * 110.01468 * 306.39254 * 3 2 1 5 5 C 1.54269 * 110.07208 * 67.80721 * 3 2 1 6 6 C 1.54889 * 104.19193 * 142.91706 * 5 3 2 7 7 C 1.54890 * 102.75037 * 322.05781 * 6 5 3 8 8 H 1.09002 * 110.59886 * 279.20815 * 7 6 5 9 9 N 1.46496 * 110.48471 * 156.62426 * 7 6 5 10 10 C 1.39686 * 120.00590 * 90.22311 * 9 7 6 11 11 C 1.39341 * 119.94688 * 359.97438 * 10 9 7 12 12 C 1.38468 * 120.42242 * 180.02562 * 11 10 9 13 13 C 1.37694 * 120.32938 * 0.02562 * 12 11 10 14 14 C 1.40750 * 119.88539 * 359.97438 * 13 12 11 15 15 C 1.41406 * 120.20314 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00333 * 155.24199 * 15 14 13 17 17 C 1.39931 * 119.99896 * 335.24119 * 15 14 13 18 18 N 1.30828 * 120.00196 * 342.20228 * 17 15 14 19 19 Si 1.86806 * 119.99868 * 162.20477 * 17 15 14 20 20 H 1.48493 * 109.47186 * 94.65968 * 19 17 15 21 21 H 1.48501 * 109.47003 * 214.66075 * 19 17 15 22 22 H 1.48505 * 109.46946 * 334.65757 * 19 17 15 23 23 C 1.38273 * 119.95422 * 179.97438 * 10 9 7 24 24 C 1.53871 * 110.02902 * 184.99926 * 3 2 1 25 25 H 1.08998 * 109.47072 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47500 * 300.00206 * 1 2 3 27 27 H 1.08993 * 109.47084 * 60.00275 * 1 2 3 28 28 H 1.08996 * 109.47500 * 239.99794 * 2 1 3 29 29 H 1.08999 * 109.47356 * 120.00086 * 2 1 3 30 30 H 1.08996 * 110.48410 * 261.60148 * 5 3 2 31 31 H 1.08997 * 110.48223 * 24.10609 * 5 3 2 32 32 H 1.08999 * 110.75008 * 203.74402 * 6 5 3 33 33 H 1.09000 * 110.75424 * 80.37930 * 6 5 3 34 34 H 0.97009 * 119.99712 * 270.22178 * 9 7 6 35 35 H 1.08005 * 119.78595 * 359.97438 * 11 10 9 36 36 H 1.08008 * 119.83996 * 180.02562 * 12 11 10 37 37 H 1.07990 * 120.05901 * 179.97438 * 13 12 11 38 38 H 0.97009 * 120.00214 * 180.02562 * 18 17 15 39 39 H 1.07995 * 120.16173 * 0.25314 * 23 10 9 40 40 H 1.09003 * 110.02846 * 121.38505 * 24 3 2 41 41 H 1.08995 * 110.04032 * 359.95131 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5914 1.9969 -0.8244 5 6 1.7005 2.1242 1.3416 6 6 2.9287 3.0216 1.6332 7 6 4.1123 2.1508 1.1434 8 1 4.3807 1.4099 1.8966 9 7 5.2673 2.9914 0.8185 10 6 6.2158 3.2853 1.8010 11 6 6.0621 2.7788 3.0899 12 6 6.9960 3.0643 4.0715 13 6 8.0875 3.8531 3.7844 14 6 8.2560 4.3718 2.4868 15 6 9.3742 5.1830 2.1847 16 1 9.7319 5.2526 1.1681 17 6 10.0171 5.8957 3.2029 18 7 9.4084 6.1008 4.3427 19 14 11.7445 6.5543 2.9348 20 1 11.6707 7.9630 2.4710 21 1 12.5015 6.4923 4.2109 22 1 12.4345 5.7309 1.9095 23 6 7.3058 4.0784 1.4930 24 6 3.5734 1.4594 -0.1260 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 0.7996 2.7301 1.2444 31 1 1.5749 1.3789 2.1270 32 1 3.0142 3.2243 2.7008 33 1 2.8718 3.9505 1.0659 34 1 5.3734 3.3439 -0.0790 35 1 5.2085 2.1602 3.3250 36 1 6.8678 2.6664 5.0674 37 1 8.8130 4.0734 4.5533 38 1 9.8540 6.5951 5.0485 39 1 7.4238 4.4749 0.4954 40 1 3.8691 2.0220 -1.0116 41 1 3.9545 0.4400 -0.1863 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313424625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:40 Heat of formation + Delta-G solvation = -8.379079 kcal Electronic energy + Delta-G solvation = -18786.077081 eV Core-core repulsion = 16049.922160 eV Total energy + Delta-G solvation = -2736.154921 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.01989 -37.36759 -34.78517 -33.24738 -31.81294 -29.70471 -28.80183 -27.85884 -25.61032 -25.11717 -22.75422 -21.11528 -20.56092 -19.87986 -19.30402 -17.37091 -15.79026 -15.68465 -15.08751 -14.64189 -14.60208 -14.32544 -13.65027 -13.31507 -13.18696 -12.78392 -12.63371 -12.15260 -12.07190 -12.00060 -11.53494 -11.41795 -11.24445 -11.00038 -10.95031 -10.76312 -10.58234 -10.51161 -10.47251 -10.43657 -10.17942 -9.70141 -9.27742 -9.14713 -8.64723 -7.33754 -6.67187 -6.14176 -4.26660 2.88864 3.11916 3.17051 3.26687 3.41321 3.99904 4.25523 4.60147 4.65680 4.76839 4.81460 5.09059 5.21926 5.34367 5.49688 5.57219 5.61216 5.70898 5.77501 5.82140 5.85486 5.89475 5.93765 6.08077 6.08118 6.17602 6.37055 6.38928 6.45463 6.48113 6.63209 7.08632 7.14438 7.16005 7.39323 7.46063 7.85359 7.96762 8.19136 8.30450 8.56782 8.71066 8.84114 9.04531 9.17290 10.28993 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.054498 B = 0.003597 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.660644 B = 7781.459968 C = 7998.501668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.090 4.090 4 H 0.069 0.931 5 C -0.118 4.118 6 C -0.140 4.140 7 C 0.158 3.842 8 H 0.080 0.920 9 N -0.755 5.755 10 C 0.226 3.774 11 C -0.302 4.302 12 C -0.075 4.075 13 C -0.200 4.200 14 C 0.142 3.858 15 C -0.465 4.465 16 H 0.075 0.925 17 C 0.078 3.922 18 N -0.793 5.793 19 Si 0.904 3.096 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.290 4.290 24 C -0.128 4.128 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.386 0.614 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.278 0.722 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.181 -7.648 -5.782 15.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.109 4.109 4 H 0.087 0.913 5 C -0.156 4.156 6 C -0.179 4.179 7 C 0.051 3.949 8 H 0.098 0.902 9 N -0.387 5.387 10 C 0.127 3.873 11 C -0.325 4.325 12 C -0.094 4.094 13 C -0.221 4.221 14 C 0.139 3.861 15 C -0.495 4.495 16 H 0.093 0.907 17 C -0.140 4.140 18 N -0.418 5.418 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.314 4.314 24 C -0.166 4.166 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.219 0.781 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.131 0.869 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.250 -7.640 -5.445 15.430 hybrid contribution 0.743 0.586 -0.358 1.011 sum -11.507 -7.054 -5.804 14.692 Atomic orbital electron populations 1.21787 0.96115 1.01256 1.01811 1.21662 0.95655 0.96310 1.01894 1.21749 0.95140 0.95818 0.98149 0.91261 1.22400 0.97971 0.98593 0.96598 1.23005 0.94574 0.98620 1.01700 1.21498 0.85545 0.92037 0.95812 0.90193 1.44534 1.24724 1.57846 1.11624 1.17484 0.88174 0.93555 0.88072 1.19879 1.04497 1.14752 0.93323 1.20440 0.95019 0.97764 0.96220 1.21153 0.99754 1.02811 0.98346 1.17330 0.89959 0.88035 0.90809 1.19537 1.11076 1.23808 0.95101 0.90712 1.25884 0.98949 0.94685 0.94462 1.69868 1.36611 1.30440 1.04883 0.86376 0.82387 0.79469 0.78890 1.19707 1.20114 1.18508 1.20396 0.98476 1.12535 1.00014 1.22482 0.94762 1.00953 0.98387 0.93084 0.92572 0.92975 0.92228 0.91835 0.92083 0.91621 0.91414 0.91504 0.78058 0.89617 0.89752 0.86879 0.91104 0.89417 0.91657 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.77 37.16 0.36 -0.84 16 2 C -0.12 -1.06 5.06 -26.73 -0.14 -1.19 16 3 C -0.09 -0.92 2.93 -89.50 -0.26 -1.18 16 4 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 5 C -0.12 -1.29 5.54 -25.07 -0.14 -1.43 16 6 C -0.14 -1.96 6.58 -24.74 -0.16 -2.12 16 7 C 0.16 2.38 2.93 -66.27 -0.19 2.18 16 8 H 0.08 1.30 6.39 -51.93 -0.33 0.97 16 9 N -0.76 -13.74 5.33 -50.62 -0.27 -14.01 16 10 C 0.23 5.16 6.64 -83.86 -0.56 4.60 16 11 C -0.30 -6.98 9.23 -39.09 -0.36 -7.34 16 12 C -0.08 -1.85 10.01 -39.70 -0.40 -2.25 16 13 C -0.20 -5.42 8.69 -38.83 -0.34 -5.76 16 14 C 0.14 3.92 5.57 -106.85 -0.60 3.32 16 15 C -0.47 -12.76 9.05 -37.74 -0.34 -13.10 16 16 H 0.07 1.98 7.91 -52.49 -0.41 1.56 16 17 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 18 N -0.79 -21.13 10.97 55.55 0.61 -20.52 16 19 Si 0.90 19.12 29.60 -169.99 -5.03 14.09 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 23 C -0.29 -7.37 9.63 -38.68 -0.37 -7.74 16 24 C -0.13 -1.53 6.19 -25.62 -0.16 -1.69 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.59 8.01 -51.93 -0.42 0.17 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.70 7.76 -51.93 -0.40 0.29 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.39 6.47 8.37 -40.82 -0.34 6.13 16 35 H 0.09 1.79 6.18 -52.48 -0.32 1.47 16 36 H 0.08 1.86 8.06 -52.48 -0.42 1.43 16 37 H 0.11 3.15 6.17 -52.49 -0.32 2.83 16 38 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 39 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 40 H 0.06 0.77 7.73 -51.93 -0.40 0.37 16 41 H 0.07 0.78 7.67 -51.93 -0.40 0.38 16 LS Contribution 325.27 15.07 4.90 4.90 Total: -1.00 -28.17 325.27 -10.21 -38.39 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -6.68 Total: 9.77 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: -3.74 Total: -32.61 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.34 Total: -34.53 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.17 -10.21 -38.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313424625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.008 kcal (2) G-P(sol) polarization free energy of solvation -28.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds