Wall clock time and date at job start Mon Mar 30 2020 07:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47066 * 2 1 4 4 H 1.08999 * 110.01468 * 306.39254 * 3 2 1 5 5 C 1.54269 * 110.07208 * 67.80721 * 3 2 1 6 6 C 1.54889 * 104.19193 * 142.91706 * 5 3 2 7 7 C 1.54890 * 102.75037 * 322.05781 * 6 5 3 8 8 H 1.09002 * 110.59886 * 279.20815 * 7 6 5 9 9 N 1.46496 * 110.48471 * 156.62426 * 7 6 5 10 10 C 1.39686 * 120.00590 * 90.22311 * 9 7 6 11 11 C 1.39341 * 119.94688 * 359.97438 * 10 9 7 12 12 C 1.38468 * 120.42242 * 180.02562 * 11 10 9 13 13 C 1.37694 * 120.32938 * 0.02562 * 12 11 10 14 14 C 1.40750 * 119.88539 * 359.97438 * 13 12 11 15 15 C 1.41406 * 120.20314 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00333 * 155.24199 * 15 14 13 17 17 C 1.39931 * 119.99896 * 335.24119 * 15 14 13 18 18 N 1.30828 * 120.00196 * 342.20228 * 17 15 14 19 19 Si 1.86806 * 119.99868 * 162.20477 * 17 15 14 20 20 H 1.48493 * 109.47186 * 94.65968 * 19 17 15 21 21 H 1.48501 * 109.47003 * 214.66075 * 19 17 15 22 22 H 1.48505 * 109.46946 * 334.65757 * 19 17 15 23 23 C 1.38273 * 119.95422 * 179.97438 * 10 9 7 24 24 C 1.53871 * 110.02902 * 184.99926 * 3 2 1 25 25 H 1.08998 * 109.47072 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47500 * 300.00206 * 1 2 3 27 27 H 1.08993 * 109.47084 * 60.00275 * 1 2 3 28 28 H 1.08996 * 109.47500 * 239.99794 * 2 1 3 29 29 H 1.08999 * 109.47356 * 120.00086 * 2 1 3 30 30 H 1.08996 * 110.48410 * 261.60148 * 5 3 2 31 31 H 1.08997 * 110.48223 * 24.10609 * 5 3 2 32 32 H 1.08999 * 110.75008 * 203.74402 * 6 5 3 33 33 H 1.09000 * 110.75424 * 80.37930 * 6 5 3 34 34 H 0.97009 * 119.99712 * 270.22178 * 9 7 6 35 35 H 1.08005 * 119.78595 * 359.97438 * 11 10 9 36 36 H 1.08008 * 119.83996 * 180.02562 * 12 11 10 37 37 H 1.07990 * 120.05901 * 179.97438 * 13 12 11 38 38 H 0.97009 * 120.00214 * 180.02562 * 18 17 15 39 39 H 1.07995 * 120.16173 * 0.25314 * 23 10 9 40 40 H 1.09003 * 110.02846 * 121.38505 * 24 3 2 41 41 H 1.08995 * 110.04032 * 359.95131 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5914 1.9969 -0.8244 5 6 1.7005 2.1242 1.3416 6 6 2.9287 3.0216 1.6332 7 6 4.1123 2.1508 1.1434 8 1 4.3807 1.4099 1.8966 9 7 5.2673 2.9914 0.8185 10 6 6.2158 3.2853 1.8010 11 6 6.0621 2.7788 3.0899 12 6 6.9960 3.0643 4.0715 13 6 8.0875 3.8531 3.7844 14 6 8.2560 4.3718 2.4868 15 6 9.3742 5.1830 2.1847 16 1 9.7319 5.2526 1.1681 17 6 10.0171 5.8957 3.2029 18 7 9.4084 6.1008 4.3427 19 14 11.7445 6.5543 2.9348 20 1 11.6707 7.9630 2.4710 21 1 12.5015 6.4923 4.2109 22 1 12.4345 5.7309 1.9095 23 6 7.3058 4.0784 1.4930 24 6 3.5734 1.4594 -0.1260 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 0.7996 2.7301 1.2444 31 1 1.5749 1.3789 2.1270 32 1 3.0142 3.2243 2.7008 33 1 2.8718 3.9505 1.0659 34 1 5.3734 3.3439 -0.0790 35 1 5.2085 2.1602 3.3250 36 1 6.8678 2.6664 5.0674 37 1 8.8130 4.0734 4.5533 38 1 9.8540 6.5951 5.0485 39 1 7.4238 4.4749 0.4954 40 1 3.8691 2.0220 -1.0116 41 1 3.9545 0.4400 -0.1863 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313424625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:40 Heat of formation + Delta-G solvation = -21.759917 kcal Electronic energy + Delta-G solvation = -18786.657317 eV Core-core repulsion = 16049.922160 eV Total energy + Delta-G solvation = -2736.735157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.27126 -39.01009 -36.33380 -34.88418 -33.02677 -31.66825 -30.02274 -29.13049 -27.17358 -26.84171 -23.57707 -22.77753 -22.35436 -21.14721 -20.38993 -19.22477 -17.47265 -17.05248 -16.66138 -16.30368 -15.75853 -15.51175 -14.95990 -14.60857 -14.44843 -14.09448 -13.99850 -13.91820 -13.65773 -13.19609 -12.88288 -12.76696 -12.70563 -12.38935 -12.24451 -12.09727 -12.03596 -11.71756 -11.61631 -11.51687 -11.27445 -11.24524 -11.14966 -11.02273 -10.38642 -9.33475 -8.60714 -7.91325 -6.32221 1.05133 1.34758 1.39002 1.52367 1.59949 2.22868 2.80045 2.81825 3.66000 3.73644 3.87897 3.90618 4.28991 4.38260 4.46537 4.49789 4.54788 4.64302 4.68694 4.74868 4.77194 4.90112 4.96319 5.04119 5.12829 5.14688 5.16931 5.20580 5.24011 5.29323 5.36513 5.38416 5.43791 5.48408 5.61034 5.63280 5.97240 6.03548 6.20890 6.32353 6.64230 6.91054 7.02634 7.07523 7.27001 8.37835 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.054498 B = 0.003597 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.660644 B = 7781.459968 C = 7998.501668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.083 4.083 4 H 0.078 0.922 5 C -0.109 4.109 6 C -0.139 4.139 7 C 0.150 3.850 8 H 0.070 0.930 9 N -0.746 5.746 10 C 0.236 3.764 11 C -0.304 4.304 12 C -0.076 4.076 13 C -0.233 4.233 14 C 0.113 3.887 15 C -0.504 4.504 16 H 0.072 0.928 17 C 0.035 3.965 18 N -0.824 5.824 19 Si 0.982 3.018 20 H -0.262 1.262 21 H -0.265 1.265 22 H -0.260 1.260 23 C -0.314 4.314 24 C -0.121 4.121 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.394 0.606 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.287 0.713 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.409 -8.416 -6.633 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.102 4.102 4 H 0.096 0.904 5 C -0.147 4.147 6 C -0.178 4.178 7 C 0.044 3.956 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.134 3.866 11 C -0.326 4.326 12 C -0.095 4.095 13 C -0.254 4.254 14 C 0.110 3.890 15 C -0.533 4.533 16 H 0.090 0.910 17 C -0.179 4.179 18 N -0.450 5.450 19 Si 0.802 3.198 20 H -0.187 1.187 21 H -0.189 1.189 22 H -0.183 1.183 23 C -0.338 4.338 24 C -0.159 4.159 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.228 0.772 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.529 -8.428 -6.320 17.147 hybrid contribution 0.977 0.762 -0.115 1.245 sum -12.552 -7.666 -6.435 16.054 Atomic orbital electron populations 1.21776 0.95199 1.01871 1.02020 1.21642 0.96430 0.95203 1.02061 1.21719 0.93684 0.96868 0.97934 0.90353 1.22362 0.96898 0.98249 0.97198 1.22943 0.95671 0.98788 1.00429 1.21744 0.84639 0.91734 0.97468 0.91183 1.44639 1.24502 1.57526 1.11045 1.17547 0.88055 0.91955 0.89016 1.20163 1.04781 1.14600 0.93098 1.20730 0.94284 0.96752 0.97692 1.21085 1.01030 1.05190 0.98095 1.17698 0.90878 0.88678 0.91715 1.19799 1.12493 1.25364 0.95684 0.91015 1.26775 1.02962 0.94423 0.93778 1.69925 1.38411 1.30909 1.05772 0.85212 0.76542 0.78899 0.79111 1.18675 1.18926 1.18336 1.20520 0.99435 1.13993 0.99863 1.22443 0.95992 1.00819 0.96647 0.92353 0.92599 0.92536 0.91662 0.92144 0.90749 0.91044 0.93069 0.92199 0.77171 0.87135 0.87505 0.88655 0.90279 0.89237 0.91241 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.77 71.98 0.70 -1.24 16 2 C -0.12 -1.73 5.06 30.60 0.15 -1.58 16 3 C -0.08 -1.46 2.93 -10.07 -0.03 -1.49 16 4 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 5 C -0.11 -2.11 5.54 31.67 0.18 -1.93 16 6 C -0.14 -3.68 6.58 31.89 0.21 -3.47 16 7 C 0.15 4.26 2.93 46.07 0.13 4.39 16 8 H 0.07 2.16 6.39 -2.39 -0.02 2.14 16 9 N -0.75 -26.44 5.33 -314.06 -1.67 -28.11 16 10 C 0.24 10.76 6.64 38.16 0.25 11.02 16 11 C -0.30 -13.89 9.23 22.59 0.21 -13.69 16 12 C -0.08 -3.74 10.01 22.20 0.22 -3.52 16 13 C -0.23 -13.08 8.69 22.76 0.20 -12.89 16 14 C 0.11 6.50 5.57 -21.31 -0.12 6.38 16 15 C -0.50 -28.67 9.05 23.46 0.21 -28.46 16 16 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 17 C 0.04 1.87 5.14 85.25 0.44 2.31 16 18 N -0.82 -45.13 10.97 21.82 0.24 -44.89 16 19 Si 0.98 39.70 29.60 68.60 2.03 41.73 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 23 C -0.31 -16.34 9.63 22.85 0.22 -16.12 16 24 C -0.12 -2.60 6.19 31.32 0.19 -2.40 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.72 7.51 -2.39 -0.02 0.70 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.95 8.01 -2.39 -0.02 0.93 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.32 7.76 -2.39 -0.02 1.30 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.39 12.79 8.37 -92.70 -0.78 12.02 16 35 H 0.11 4.46 6.18 -2.91 -0.02 4.44 16 36 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 37 H 0.10 5.58 6.17 -2.92 -0.02 5.56 16 38 H 0.29 14.11 8.30 -92.70 -0.77 13.34 16 39 H 0.09 4.47 8.06 -2.91 -0.02 4.44 16 40 H 0.07 1.46 7.73 -2.39 -0.02 1.44 16 41 H 0.07 1.51 7.67 -2.39 -0.02 1.49 16 Total: -1.00 -62.17 325.27 4.00 -58.17 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: 0.23 Total: 35.79 kcal Atomic # 6 Polarization: -65.86 SS G_CDS: 3.18 Total: -62.69 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -1.44 Total: -73.00 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -62.17 4.00 -58.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313424625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.410 kcal (2) G-P(sol) polarization free energy of solvation -62.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds