Wall clock time and date at job start Mon Mar 30 2020 07:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47220 * 2 1 4 4 C 1.50700 * 109.46863 * 239.99886 * 2 1 3 5 5 H 1.08002 * 119.99478 * 236.86000 * 4 2 1 6 6 C 1.37872 * 120.00323 * 56.86987 * 4 2 1 7 7 N 1.31519 * 119.99921 * 5.81182 * 6 4 2 8 8 Si 1.86796 * 120.00372 * 185.81701 * 6 4 2 9 9 H 1.48507 * 109.47469 * 85.01724 * 8 6 4 10 10 H 1.48494 * 109.47431 * 205.01864 * 8 6 4 11 11 H 1.48504 * 109.47264 * 325.02266 * 8 6 4 12 12 C 1.52996 * 109.47023 * 119.99937 * 2 1 3 13 13 N 1.46897 * 109.47418 * 300.00253 * 12 2 1 14 14 C 1.47482 * 110.99700 * 265.97345 * 13 12 2 15 15 C 1.53516 * 87.93266 * 221.29341 * 14 13 12 16 16 C 1.50700 * 114.17492 * 139.66953 * 15 14 13 17 17 C 1.38235 * 119.99600 * 325.88458 * 16 15 14 18 18 C 1.38233 * 119.99696 * 179.76278 * 17 16 15 19 19 C 1.38235 * 119.99894 * 0.51255 * 18 17 16 20 20 C 1.38230 * 120.00002 * 359.74219 * 19 18 17 21 21 C 1.38229 * 120.00330 * 0.02562 * 20 19 18 22 22 C 1.47473 * 111.00438 * 170.00219 * 13 12 2 23 23 H 1.08996 * 109.47081 * 293.83092 * 1 2 3 24 24 H 1.09008 * 109.47094 * 53.82374 * 1 2 3 25 25 H 1.08997 * 109.47398 * 173.82327 * 1 2 3 26 26 H 1.09007 * 109.47572 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.47594 * 299.99618 * 3 2 1 28 28 H 1.09001 * 109.47468 * 59.99577 * 3 2 1 29 29 H 0.97000 * 120.00032 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47242 * 179.97438 * 12 2 1 31 31 H 1.09008 * 109.47108 * 59.99641 * 12 2 1 32 32 H 1.09001 * 113.47864 * 336.05741 * 14 13 12 33 33 H 1.08997 * 113.48287 * 106.52644 * 14 13 12 34 34 H 1.09007 * 114.17129 * 272.38179 * 15 14 13 35 35 H 1.08001 * 120.00212 * 0.02562 * 17 16 15 36 36 H 1.08006 * 119.99761 * 180.23093 * 18 17 16 37 37 H 1.08004 * 119.99766 * 179.71865 * 19 18 17 38 38 H 1.08006 * 120.00245 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.00600 * 179.97438 * 21 20 19 40 40 H 1.09013 * 113.47544 * 253.46745 * 22 13 12 41 41 H 1.08993 * 113.47929 * 23.92821 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6943 -1.5580 -1.1321 6 6 1.6468 -0.2783 -2.4817 7 7 0.9350 0.8204 -2.6075 8 14 2.1354 -1.2533 -3.9982 9 1 1.1497 -2.3404 -4.2267 10 1 2.1615 -0.3528 -5.1786 11 1 3.4834 -1.8424 -3.7950 12 6 2.0400 -0.7212 1.2492 13 7 1.5503 -0.0288 2.4487 14 6 2.5411 0.9488 2.9360 15 6 2.2132 0.4865 4.3627 16 6 3.4150 0.3657 5.2639 17 6 4.6307 -0.0377 4.7442 18 6 5.7343 -0.1438 5.5699 19 6 5.6196 0.1432 6.9172 20 6 4.4026 0.5415 7.4378 21 6 3.3001 0.6523 6.6113 22 6 1.8181 -0.8216 3.6630 23 1 -0.3633 0.4152 0.9400 24 1 -0.3634 0.6066 -0.8296 25 1 -0.3634 -1.0216 -0.1106 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 0.6635 1.1243 -3.4878 30 1 3.1300 -0.7216 1.2490 31 1 1.6765 -1.7489 1.2493 32 1 3.5623 0.7216 2.6299 33 1 2.2623 1.9842 2.7402 34 1 1.3789 1.0161 4.8228 35 1 4.7194 -0.2658 3.6923 36 1 6.6851 -0.4553 5.1631 37 1 6.4807 0.0560 7.5631 38 1 4.3128 0.7654 8.4906 39 1 2.3492 0.9630 7.0181 40 1 0.9263 -1.2867 4.0834 41 1 2.6462 -1.5213 3.5509 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315509860.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:18 Heat of formation + Delta-G solvation = 57.072212 kcal Electronic energy + Delta-G solvation = -19357.932634 eV Core-core repulsion = 16624.615895 eV Total energy + Delta-G solvation = -2733.316740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.44677 -38.47050 -35.44021 -32.13732 -30.98854 -30.82833 -27.73529 -26.08860 -25.17287 -24.86707 -23.87469 -22.72416 -21.49738 -19.16284 -18.54488 -16.94703 -15.91464 -15.64379 -15.20482 -14.76016 -14.63364 -14.29519 -14.01299 -13.40870 -12.98505 -12.84136 -12.53591 -12.36888 -11.91853 -11.84893 -11.51449 -11.14823 -10.98462 -10.89774 -10.75893 -10.56381 -10.55273 -10.29184 -10.04195 -9.93499 -9.26837 -9.06692 -8.96343 -8.63764 -8.61258 -8.23409 -8.13215 -5.88677 -3.98163 1.30349 1.35765 3.33060 3.39566 3.41757 3.70821 4.40513 4.53372 4.74184 4.88068 4.91744 4.95464 5.09629 5.27177 5.36865 5.44944 5.50819 5.69927 5.72050 5.89249 5.94187 6.00021 6.03372 6.16273 6.23218 6.39876 6.44260 6.46850 6.69406 6.75408 6.89647 6.96329 6.97578 7.22986 7.27651 7.45050 7.50019 7.73313 7.81296 7.85967 8.23701 8.36567 8.58475 9.03070 9.66292 11.12259 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.038212 B = 0.004265 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.582322 B = 6564.176854 C = 6901.269813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.076 3.924 3 C -0.128 4.128 4 C -0.510 4.510 5 H 0.050 0.950 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.037 3.963 13 N -0.459 5.459 14 C 0.014 3.986 15 C -0.088 4.088 16 C -0.063 4.063 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.130 4.130 20 C -0.122 4.122 21 C -0.116 4.116 22 C 0.006 3.994 23 H 0.023 0.977 24 H 0.070 0.930 25 H 0.017 0.983 26 H 0.014 0.986 27 H 0.078 0.922 28 H 0.017 0.983 29 H 0.258 0.742 30 H 0.028 0.972 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.782 -0.189 17.086 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.075 3.925 3 C -0.186 4.186 4 C -0.549 4.549 5 H 0.068 0.932 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.715 3.285 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.091 4.091 13 N -0.181 5.181 14 C -0.115 4.115 15 C -0.107 4.107 16 C -0.063 4.063 17 C -0.134 4.134 18 C -0.136 4.136 19 C -0.148 4.148 20 C -0.140 4.140 21 C -0.134 4.134 22 C -0.123 4.123 23 H 0.042 0.958 24 H 0.089 0.911 25 H 0.036 0.964 26 H 0.034 0.966 27 H 0.097 0.903 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.098 0.902 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.008 0.111 16.707 17.442 hybrid contribution 1.206 -0.935 -0.841 1.743 sum 6.214 -0.824 15.866 17.059 Atomic orbital electron populations 1.21629 0.97545 0.99026 0.99469 1.17985 0.93015 0.92143 0.89351 1.21852 0.97323 0.99003 1.00390 1.21116 1.28900 1.14178 0.90689 0.93160 1.24871 0.95203 0.94761 0.98578 1.69869 1.38015 1.21354 1.22915 0.86708 0.78824 0.80082 0.82904 1.20728 1.21381 1.20198 1.22880 0.96510 0.97759 0.91911 1.68967 1.39730 1.08351 1.01037 1.23975 0.95952 0.99802 0.91762 1.21842 0.95623 0.99072 0.94115 1.19806 0.94685 0.97844 0.93982 1.21125 0.92510 0.99662 1.00107 1.21139 0.98543 1.00073 0.93840 1.21107 0.97616 1.00637 0.95455 1.21112 0.93106 1.00187 0.99559 1.21059 0.98695 1.00530 0.93146 1.23827 1.00407 0.95003 0.93093 0.95825 0.91107 0.96362 0.96633 0.90293 0.96446 0.93225 0.95322 0.92468 0.91401 0.89808 0.87621 0.85958 0.86212 0.86430 0.86332 0.86112 0.90246 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.97 8.05 37.16 0.30 -2.67 16 2 C 0.08 1.86 0.57 -155.67 -0.09 1.78 16 3 C -0.13 -3.11 7.49 37.15 0.28 -2.83 16 4 C -0.51 -13.91 8.01 -34.44 -0.28 -14.19 16 5 H 0.05 1.37 7.75 -52.49 -0.41 0.96 16 6 C 0.07 1.84 5.13 -17.82 -0.09 1.75 16 7 N -0.88 -24.82 9.46 55.43 0.52 -24.30 16 8 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 C 0.04 0.78 3.83 -3.83 -0.01 0.77 16 13 N -0.46 -8.35 5.16 -244.65 -1.26 -9.62 16 14 C 0.01 0.22 5.54 -7.55 -0.04 0.18 16 15 C -0.09 -1.18 4.32 -91.24 -0.39 -1.57 16 16 C -0.06 -0.78 5.35 -104.62 -0.56 -1.34 16 17 C -0.12 -1.45 8.68 -39.58 -0.34 -1.79 16 18 C -0.12 -1.30 10.05 -39.58 -0.40 -1.69 16 19 C -0.13 -1.31 10.05 -39.59 -0.40 -1.70 16 20 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 21 C -0.12 -1.28 9.72 -39.59 -0.38 -1.67 16 22 C 0.01 0.09 7.17 -7.56 -0.05 0.03 16 23 H 0.02 0.54 7.42 -51.93 -0.39 0.16 16 24 H 0.07 1.92 6.25 -51.92 -0.32 1.59 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 27 H 0.08 2.13 6.11 -51.92 -0.32 1.81 16 28 H 0.02 0.38 5.82 -51.93 -0.30 0.07 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.03 0.60 7.30 -51.93 -0.38 0.22 16 31 H 0.06 1.22 8.08 -51.92 -0.42 0.80 16 32 H 0.07 1.09 5.47 -51.93 -0.28 0.81 16 33 H 0.08 1.38 7.06 -51.93 -0.37 1.01 16 34 H 0.11 1.34 8.11 -51.93 -0.42 0.91 16 35 H 0.12 1.57 6.50 -52.49 -0.34 1.23 16 36 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 37 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 41 H 0.06 0.93 7.51 -51.93 -0.39 0.54 16 LS Contribution 317.82 15.07 4.79 4.79 Total: -1.00 -28.41 317.82 -10.27 -38.68 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.43 Total: 0.72 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -2.86 Total: -26.56 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: -0.74 Total: -33.92 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.41 -10.27 -38.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315509860.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.749 kcal (2) G-P(sol) polarization free energy of solvation -28.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds