Wall clock time and date at job start Mon Mar 30 2020 07:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47220 * 2 1 4 4 C 1.50700 * 109.46863 * 239.99886 * 2 1 3 5 5 H 1.08002 * 119.99478 * 236.86000 * 4 2 1 6 6 C 1.37872 * 120.00323 * 56.86987 * 4 2 1 7 7 N 1.31519 * 119.99921 * 5.81182 * 6 4 2 8 8 Si 1.86796 * 120.00372 * 185.81701 * 6 4 2 9 9 H 1.48507 * 109.47469 * 85.01724 * 8 6 4 10 10 H 1.48494 * 109.47431 * 205.01864 * 8 6 4 11 11 H 1.48504 * 109.47264 * 325.02266 * 8 6 4 12 12 C 1.52996 * 109.47023 * 119.99937 * 2 1 3 13 13 N 1.46897 * 109.47418 * 300.00253 * 12 2 1 14 14 C 1.47482 * 110.99700 * 265.97345 * 13 12 2 15 15 C 1.53516 * 87.93266 * 221.29341 * 14 13 12 16 16 C 1.50700 * 114.17492 * 139.66953 * 15 14 13 17 17 C 1.38235 * 119.99600 * 325.88458 * 16 15 14 18 18 C 1.38233 * 119.99696 * 179.76278 * 17 16 15 19 19 C 1.38235 * 119.99894 * 0.51255 * 18 17 16 20 20 C 1.38230 * 120.00002 * 359.74219 * 19 18 17 21 21 C 1.38229 * 120.00330 * 0.02562 * 20 19 18 22 22 C 1.47473 * 111.00438 * 170.00219 * 13 12 2 23 23 H 1.08996 * 109.47081 * 293.83092 * 1 2 3 24 24 H 1.09008 * 109.47094 * 53.82374 * 1 2 3 25 25 H 1.08997 * 109.47398 * 173.82327 * 1 2 3 26 26 H 1.09007 * 109.47572 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.47594 * 299.99618 * 3 2 1 28 28 H 1.09001 * 109.47468 * 59.99577 * 3 2 1 29 29 H 0.97000 * 120.00032 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47242 * 179.97438 * 12 2 1 31 31 H 1.09008 * 109.47108 * 59.99641 * 12 2 1 32 32 H 1.09001 * 113.47864 * 336.05741 * 14 13 12 33 33 H 1.08997 * 113.48287 * 106.52644 * 14 13 12 34 34 H 1.09007 * 114.17129 * 272.38179 * 15 14 13 35 35 H 1.08001 * 120.00212 * 0.02562 * 17 16 15 36 36 H 1.08006 * 119.99761 * 180.23093 * 18 17 16 37 37 H 1.08004 * 119.99766 * 179.71865 * 19 18 17 38 38 H 1.08006 * 120.00245 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.00600 * 179.97438 * 21 20 19 40 40 H 1.09013 * 113.47544 * 253.46745 * 22 13 12 41 41 H 1.08993 * 113.47929 * 23.92821 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6943 -1.5580 -1.1321 6 6 1.6468 -0.2783 -2.4817 7 7 0.9350 0.8204 -2.6075 8 14 2.1354 -1.2533 -3.9982 9 1 1.1497 -2.3404 -4.2267 10 1 2.1615 -0.3528 -5.1786 11 1 3.4834 -1.8424 -3.7950 12 6 2.0400 -0.7212 1.2492 13 7 1.5503 -0.0288 2.4487 14 6 2.5411 0.9488 2.9360 15 6 2.2132 0.4865 4.3627 16 6 3.4150 0.3657 5.2639 17 6 4.6307 -0.0377 4.7442 18 6 5.7343 -0.1438 5.5699 19 6 5.6196 0.1432 6.9172 20 6 4.4026 0.5415 7.4378 21 6 3.3001 0.6523 6.6113 22 6 1.8181 -0.8216 3.6630 23 1 -0.3633 0.4152 0.9400 24 1 -0.3634 0.6066 -0.8296 25 1 -0.3634 -1.0216 -0.1106 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 0.6635 1.1243 -3.4878 30 1 3.1300 -0.7216 1.2490 31 1 1.6765 -1.7489 1.2493 32 1 3.5623 0.7216 2.6299 33 1 2.2623 1.9842 2.7402 34 1 1.3789 1.0161 4.8228 35 1 4.7194 -0.2658 3.6923 36 1 6.6851 -0.4553 5.1631 37 1 6.4807 0.0560 7.5631 38 1 4.3128 0.7654 8.4906 39 1 2.3492 0.9630 7.0181 40 1 0.9263 -1.2867 4.0834 41 1 2.6462 -1.5213 3.5509 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315509860.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:17 Heat of formation + Delta-G solvation = 42.439393 kcal Electronic energy + Delta-G solvation = -19358.567161 eV Core-core repulsion = 16624.615895 eV Total energy + Delta-G solvation = -2733.951266 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.63730 -39.47807 -37.27933 -33.73792 -32.33249 -31.74389 -29.12658 -27.80002 -27.23298 -26.44159 -25.26416 -23.60185 -22.60927 -20.41425 -20.23645 -17.96986 -17.83720 -16.92079 -16.56830 -16.30888 -15.83008 -15.45352 -15.32655 -14.64227 -14.25589 -14.22188 -14.10178 -13.60546 -13.31539 -13.25005 -13.15304 -12.88548 -12.68734 -12.49488 -12.32390 -12.11281 -12.05554 -11.79658 -11.64864 -11.55131 -11.18894 -10.85768 -10.59843 -10.32267 -9.78154 -9.63287 -9.51363 -7.97680 -6.14091 0.45683 0.53947 1.41331 1.42929 1.50804 2.45417 2.85464 3.20749 3.24479 3.70205 3.78163 4.02442 4.17842 4.26380 4.29029 4.33093 4.41282 4.52734 4.59642 4.66867 4.74225 4.80454 4.82896 4.91796 5.00309 5.10190 5.14488 5.18304 5.26402 5.32753 5.40124 5.52841 5.55685 5.62562 5.66207 5.71005 5.76812 5.78933 6.14972 6.18205 6.24956 6.34236 6.51398 6.95165 7.53089 9.01008 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.038212 B = 0.004265 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.582322 B = 6564.176854 C = 6901.269813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.065 3.935 3 C -0.112 4.112 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.023 3.977 7 N -0.903 5.903 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.052 3.948 13 N -0.476 5.476 14 C 0.010 3.990 15 C -0.064 4.064 16 C -0.079 4.079 17 C -0.134 4.134 18 C -0.128 4.128 19 C -0.130 4.130 20 C -0.123 4.123 21 C -0.121 4.121 22 C 0.008 3.992 23 H 0.036 0.964 24 H 0.045 0.955 25 H 0.009 0.991 26 H 0.011 0.989 27 H 0.050 0.950 28 H 0.033 0.967 29 H 0.257 0.743 30 H 0.025 0.975 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.133 0.867 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.090 0.910 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.474 -0.451 19.137 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.064 3.936 3 C -0.170 4.170 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.198 1.198 12 C -0.076 4.076 13 N -0.198 5.198 14 C -0.119 4.119 15 C -0.083 4.083 16 C -0.080 4.080 17 C -0.152 4.152 18 C -0.146 4.146 19 C -0.148 4.148 20 C -0.141 4.141 21 C -0.138 4.138 22 C -0.121 4.121 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.028 0.972 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.151 0.849 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.108 0.892 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.703 -0.154 18.769 19.617 hybrid contribution 1.024 -0.836 -1.405 1.929 sum 6.727 -0.990 17.363 18.647 Atomic orbital electron populations 1.21453 0.97867 0.97926 0.98961 1.18053 0.92752 0.92425 0.90358 1.21650 0.96873 0.98800 0.99672 1.21442 1.29037 1.14290 0.92114 0.93787 1.25545 0.95343 0.95584 1.01134 1.70004 1.38606 1.22278 1.23332 0.85794 0.78590 0.78809 0.79730 1.20399 1.21060 1.19758 1.22553 0.96030 0.97093 0.91973 1.68895 1.40413 1.09482 1.01024 1.23988 0.95247 0.98869 0.93797 1.21671 0.96392 0.97398 0.92848 1.19746 0.94115 0.99457 0.94642 1.21153 0.93401 1.00754 0.99861 1.21375 0.98681 1.00104 0.94445 1.21471 0.98676 0.99359 0.95259 1.21477 0.92610 0.99132 1.00847 1.21305 0.99984 1.00021 0.92538 1.23865 1.00963 0.95706 0.91572 0.94541 0.93616 0.97186 0.96976 0.93141 0.94813 0.93337 0.95716 0.93190 0.91786 0.90488 0.86419 0.87270 0.84915 0.83915 0.83636 0.84413 0.89172 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.26 8.05 71.98 0.58 -4.68 16 2 C 0.06 3.23 0.57 -52.93 -0.03 3.20 16 3 C -0.11 -5.52 7.49 71.98 0.54 -4.98 16 4 C -0.53 -29.29 8.01 25.60 0.20 -29.09 16 5 H 0.04 2.42 7.75 -2.91 -0.02 2.40 16 6 C 0.02 1.28 5.13 84.65 0.43 1.71 16 7 N -0.90 -51.60 9.46 21.45 0.20 -51.40 16 8 Si 0.94 43.99 29.54 68.60 2.03 46.02 16 9 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.05 2.20 3.83 86.30 0.33 2.53 16 13 N -0.48 -17.06 5.16 -927.92 -4.79 -21.85 16 14 C 0.01 0.31 5.54 83.57 0.46 0.77 16 15 C -0.06 -1.63 4.32 -11.19 -0.05 -1.68 16 16 C -0.08 -1.85 5.35 -19.87 -0.11 -1.95 16 17 C -0.13 -3.22 8.68 22.27 0.19 -3.02 16 18 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 19 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 20 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 21 C -0.12 -2.33 9.72 22.27 0.22 -2.12 16 22 C 0.01 0.22 7.17 83.57 0.60 0.82 16 23 H 0.04 1.69 7.42 -2.39 -0.02 1.67 16 24 H 0.04 2.51 6.25 -2.38 -0.01 2.50 16 25 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.05 2.76 6.11 -2.38 -0.01 2.75 16 28 H 0.03 1.50 5.82 -2.39 -0.01 1.48 16 29 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.02 1.04 7.30 -2.39 -0.02 1.03 16 31 H 0.05 2.15 8.08 -2.38 -0.02 2.13 16 32 H 0.06 2.07 5.47 -2.39 -0.01 2.06 16 33 H 0.08 2.50 7.06 -2.39 -0.02 2.48 16 34 H 0.12 2.70 8.11 -2.38 -0.02 2.68 16 35 H 0.11 2.83 6.50 -2.91 -0.02 2.81 16 36 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 38 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 41 H 0.06 1.82 7.51 -2.39 -0.02 1.80 16 Total: -1.00 -60.48 317.82 2.47 -58.00 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.99 Total: 13.91 kcal Atomic # 6 Polarization: -48.73 SS G_CDS: 4.05 Total: -44.68 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: -4.59 Total: -73.25 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -60.48 2.47 -58.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315509860.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.442 kcal (2) G-P(sol) polarization free energy of solvation -60.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds