Wall clock time and date at job start Mon Mar 30 2020 07:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47159 * 2 1 4 4 H 1.09000 * 109.47322 * 55.62680 * 3 2 1 5 5 N 1.46506 * 109.46897 * 295.63520 * 3 2 1 6 6 C 1.39678 * 120.00178 * 96.93805 * 5 3 2 7 7 C 1.39339 * 119.95361 * 2.22831 * 6 5 3 8 8 C 1.38478 * 120.42353 * 179.97438 * 7 6 5 9 9 C 1.37678 * 120.32725 * 0.02562 * 8 7 6 10 10 C 1.40750 * 119.89516 * 359.97438 * 9 8 7 11 11 C 1.41408 * 120.21071 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00174 * 152.57427 * 11 10 9 13 13 C 1.39926 * 120.00029 * 332.30275 * 11 10 9 14 14 N 1.30833 * 119.99801 * 347.23353 * 13 11 10 15 15 Si 1.86797 * 120.00173 * 167.23560 * 13 11 10 16 16 H 1.48499 * 109.47334 * 89.99947 * 15 13 11 17 17 H 1.48507 * 109.46856 * 209.99566 * 15 13 11 18 18 H 1.48493 * 109.47120 * 329.99801 * 15 13 11 19 19 C 1.38283 * 119.95362 * 182.50371 * 6 5 3 20 20 C 1.52995 * 109.47502 * 175.63337 * 3 2 1 21 21 H 1.09003 * 115.54994 * 34.41555 * 20 3 2 22 22 C 1.53001 * 117.50073 * 248.74451 * 20 3 2 23 23 C 1.53004 * 117.49909 * 180.08333 * 20 3 2 24 24 H 1.08996 * 117.49441 * 214.97763 * 23 20 3 25 25 C 1.52992 * 117.49726 * 0.02562 * 23 20 3 26 26 H 1.08993 * 109.47525 * 304.44722 * 1 2 3 27 27 H 1.09002 * 109.47065 * 64.45329 * 1 2 3 28 28 H 1.09004 * 109.46891 * 184.44324 * 1 2 3 29 29 H 1.09000 * 109.47866 * 239.99780 * 2 1 3 30 30 H 1.08997 * 109.47323 * 119.99432 * 2 1 3 31 31 H 0.97005 * 119.99905 * 276.94410 * 5 3 2 32 32 H 1.08003 * 119.78274 * 0.02562 * 7 6 5 33 33 H 1.07997 * 119.83303 * 179.97438 * 8 7 6 34 34 H 1.08007 * 120.05636 * 179.97438 * 9 8 7 35 35 H 0.96995 * 120.00019 * 180.02562 * 14 13 11 36 36 H 1.08010 * 120.15640 * 0.02562 * 19 6 5 37 37 H 1.09002 * 117.49504 * 359.97438 * 22 20 3 38 38 H 1.08996 * 117.49856 * 144.99169 * 22 20 3 39 39 H 1.08998 * 109.47609 * 59.99808 * 25 23 20 40 40 H 1.09007 * 109.47106 * 179.97438 * 25 23 20 41 41 H 1.09001 * 109.47697 * 299.99537 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6141 1.9785 0.8482 5 7 1.6393 2.1021 -1.2453 6 6 0.4935 2.9003 -1.2756 7 6 -0.2420 3.1062 -0.1101 8 6 -1.3792 3.8961 -0.1289 9 6 -1.7962 4.4866 -1.3006 10 6 -1.0635 4.2878 -2.4859 11 6 -1.4855 4.8915 -3.6930 12 1 -0.7630 5.1267 -4.4605 13 6 -2.8398 5.1791 -3.8953 14 7 -3.7426 4.6734 -3.0947 15 14 -3.3589 6.2849 -5.3085 16 1 -3.6094 5.4591 -6.5171 17 1 -4.6007 7.0105 -4.9388 18 1 -2.2794 7.2640 -5.5931 19 6 0.0873 3.4804 -2.4633 20 6 3.5660 1.4440 0.1098 21 1 4.0741 0.6193 -0.3901 22 6 4.1803 1.9686 1.4092 23 6 4.2717 2.8015 0.1281 24 1 5.2441 2.8697 -0.3594 25 6 3.3972 4.0535 0.0357 26 1 -0.3634 0.5812 0.8474 27 1 -0.3633 0.4432 -0.9272 28 1 -0.3633 -1.0246 0.0796 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.1698 1.9844 -2.0489 32 1 0.0776 2.6474 0.8139 33 1 -1.9422 4.0489 0.7799 34 1 -2.6840 5.1015 -1.3104 35 1 -4.6815 4.8724 -3.2352 36 1 0.6538 3.3175 -3.3684 37 1 3.4972 2.3131 2.1856 38 1 5.0924 1.4891 1.7642 39 1 2.7059 4.0769 0.8781 40 1 4.0296 4.9410 0.0603 41 1 2.8331 4.0348 -0.8968 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000322199711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:06 Heat of formation + Delta-G solvation = 31.798233 kcal Electronic energy + Delta-G solvation = -19556.716510 eV Core-core repulsion = 16822.303808 eV Total energy + Delta-G solvation = -2734.412702 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.10362 -37.24463 -34.98342 -33.30767 -31.72815 -29.66031 -28.53887 -27.72184 -25.20682 -25.16591 -21.80364 -21.48065 -20.52958 -20.17261 -18.94545 -17.28171 -15.86885 -15.50856 -15.14170 -14.84705 -14.23258 -13.91033 -13.80090 -12.98015 -12.77248 -12.67665 -12.42035 -12.10980 -11.98839 -11.79825 -11.60112 -11.31156 -11.20306 -11.07582 -10.93887 -10.69245 -10.59632 -10.51035 -10.18273 -10.03003 -9.72015 -9.53912 -9.21026 -9.14557 -8.57816 -7.29865 -6.62226 -6.09726 -4.27031 2.90190 3.12676 3.17436 3.26818 3.41952 3.72210 4.02010 4.44943 4.71272 4.79085 4.91536 5.11426 5.34631 5.46081 5.50597 5.54665 5.72247 5.85929 5.89032 6.01599 6.07783 6.08764 6.20642 6.28557 6.33094 6.36276 6.39922 6.47251 6.65950 6.72488 6.83198 7.09566 7.14578 7.18135 7.41496 7.46844 7.85710 7.97514 8.20266 8.32425 8.59131 8.72720 8.85910 9.06001 9.18139 10.33702 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.029157 B = 0.005103 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.074570 B = 5485.701514 C = 5860.716259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.189 3.811 4 H 0.083 0.917 5 N -0.750 5.750 6 C 0.231 3.769 7 C -0.296 4.296 8 C -0.078 4.078 9 C -0.196 4.196 10 C 0.142 3.858 11 C -0.466 4.466 12 H 0.073 0.927 13 C 0.076 3.924 14 N -0.799 5.799 15 Si 0.906 3.094 16 H -0.272 1.272 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.288 4.288 20 C -0.163 4.163 21 H 0.099 0.901 22 C -0.176 4.176 23 C -0.138 4.138 24 H 0.096 0.904 25 C -0.123 4.123 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.386 0.614 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.277 0.723 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.962 -4.852 5.599 12.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C 0.082 3.918 4 H 0.100 0.900 5 N -0.381 5.381 6 C 0.133 3.867 7 C -0.318 4.318 8 C -0.097 4.097 9 C -0.216 4.216 10 C 0.139 3.861 11 C -0.496 4.496 12 H 0.091 0.909 13 C -0.140 4.140 14 N -0.426 5.426 15 Si 0.730 3.270 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.186 1.186 19 C -0.312 4.312 20 C -0.182 4.182 21 H 0.117 0.883 22 C -0.213 4.213 23 C -0.157 4.157 24 H 0.114 0.886 25 C -0.180 4.180 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.219 0.781 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.132 0.868 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.673 -4.904 5.815 12.306 hybrid contribution -0.103 0.234 -0.935 0.969 sum 9.570 -4.670 4.880 11.713 Atomic orbital electron populations 1.21754 0.95052 1.00159 1.03408 1.21980 0.96958 0.97216 1.00891 1.20275 0.89682 0.92345 0.89504 0.89959 1.44450 1.28342 1.54996 1.10321 1.17382 0.85608 0.89836 0.93864 1.19893 1.02299 1.14123 0.95532 1.20443 0.95349 0.97230 0.96674 1.21176 1.03115 1.05819 0.91529 1.17330 0.89151 0.87072 0.92571 1.19522 0.92636 1.35736 1.01734 0.90874 1.25849 0.96672 0.94411 0.97100 1.69841 1.02144 1.35324 1.35251 0.86366 0.78649 0.80689 0.81258 1.19687 1.20247 1.18643 1.20442 1.05347 1.10643 0.94751 1.22735 0.95885 0.97794 1.01757 0.88303 1.23122 1.02429 1.04422 0.91328 1.22271 1.00058 0.92643 1.00685 0.88589 1.21415 0.98410 0.94266 1.03897 0.92714 0.91422 0.94124 0.92546 0.92454 0.78093 0.89594 0.89924 0.86844 0.91223 0.89503 0.88859 0.89281 0.92710 0.93404 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.58 37.16 0.32 -1.97 16 2 C -0.13 -1.80 5.60 -26.73 -0.15 -1.94 16 3 C 0.19 2.72 1.69 -67.93 -0.12 2.60 16 4 H 0.08 1.32 5.38 -51.93 -0.28 1.04 16 5 N -0.75 -12.65 3.15 -52.21 -0.16 -12.82 16 6 C 0.23 4.91 4.87 -83.86 -0.41 4.50 16 7 C -0.30 -6.41 7.92 -39.08 -0.31 -6.72 16 8 C -0.08 -1.84 10.01 -39.70 -0.40 -2.24 16 9 C -0.20 -5.18 8.67 -38.84 -0.34 -5.51 16 10 C 0.14 3.82 5.55 -106.85 -0.59 3.22 16 11 C -0.47 -12.61 9.06 -37.74 -0.34 -12.95 16 12 H 0.07 1.91 7.88 -52.49 -0.41 1.50 16 13 C 0.08 1.96 5.22 -17.35 -0.09 1.87 16 14 N -0.80 -21.21 10.87 55.55 0.60 -20.61 16 15 Si 0.91 19.14 29.58 -169.99 -5.03 14.11 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 17 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 19 C -0.29 -7.00 9.63 -38.68 -0.37 -7.37 16 20 C -0.16 -1.99 5.29 -90.62 -0.48 -2.47 16 21 H 0.10 1.12 8.11 -51.93 -0.42 0.70 16 22 C -0.18 -1.96 9.83 -26.69 -0.26 -2.22 16 23 C -0.14 -1.70 6.38 -90.58 -0.58 -2.28 16 24 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 25 C -0.12 -1.77 9.03 37.15 0.34 -1.43 16 26 H 0.05 0.88 7.01 -51.93 -0.36 0.52 16 27 H 0.07 1.27 6.91 -51.93 -0.36 0.91 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.39 6.22 8.73 -40.82 -0.36 5.87 16 32 H 0.09 1.71 5.01 -52.48 -0.26 1.44 16 33 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.11 3.13 6.21 -52.48 -0.33 2.81 16 35 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 36 H 0.09 2.04 8.06 -52.48 -0.42 1.62 16 37 H 0.09 1.07 7.96 -51.93 -0.41 0.66 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.84 7.77 -51.93 -0.40 0.43 16 40 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 41 H 0.08 1.34 6.06 -51.93 -0.31 1.02 16 LS Contribution 322.55 15.07 4.86 4.86 Total: -1.00 -26.85 322.55 -9.94 -36.79 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -6.43 Total: 12.60 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: -3.78 Total: -34.93 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.44 Total: -33.42 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.85 -9.94 -36.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322199711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.585 kcal (2) G-P(sol) polarization free energy of solvation -26.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds