Wall clock time and date at job start Mon Mar 30 2020 07:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47159 * 2 1 4 4 H 1.09000 * 109.47322 * 55.62680 * 3 2 1 5 5 N 1.46506 * 109.46897 * 295.63520 * 3 2 1 6 6 C 1.39678 * 120.00178 * 96.93805 * 5 3 2 7 7 C 1.39339 * 119.95361 * 2.22831 * 6 5 3 8 8 C 1.38478 * 120.42353 * 179.97438 * 7 6 5 9 9 C 1.37678 * 120.32725 * 0.02562 * 8 7 6 10 10 C 1.40750 * 119.89516 * 359.97438 * 9 8 7 11 11 C 1.41408 * 120.21071 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00174 * 152.57427 * 11 10 9 13 13 C 1.39926 * 120.00029 * 332.30275 * 11 10 9 14 14 N 1.30833 * 119.99801 * 347.23353 * 13 11 10 15 15 Si 1.86797 * 120.00173 * 167.23560 * 13 11 10 16 16 H 1.48499 * 109.47334 * 89.99947 * 15 13 11 17 17 H 1.48507 * 109.46856 * 209.99566 * 15 13 11 18 18 H 1.48493 * 109.47120 * 329.99801 * 15 13 11 19 19 C 1.38283 * 119.95362 * 182.50371 * 6 5 3 20 20 C 1.52995 * 109.47502 * 175.63337 * 3 2 1 21 21 H 1.09003 * 115.54994 * 34.41555 * 20 3 2 22 22 C 1.53001 * 117.50073 * 248.74451 * 20 3 2 23 23 C 1.53004 * 117.49909 * 180.08333 * 20 3 2 24 24 H 1.08996 * 117.49441 * 214.97763 * 23 20 3 25 25 C 1.52992 * 117.49726 * 0.02562 * 23 20 3 26 26 H 1.08993 * 109.47525 * 304.44722 * 1 2 3 27 27 H 1.09002 * 109.47065 * 64.45329 * 1 2 3 28 28 H 1.09004 * 109.46891 * 184.44324 * 1 2 3 29 29 H 1.09000 * 109.47866 * 239.99780 * 2 1 3 30 30 H 1.08997 * 109.47323 * 119.99432 * 2 1 3 31 31 H 0.97005 * 119.99905 * 276.94410 * 5 3 2 32 32 H 1.08003 * 119.78274 * 0.02562 * 7 6 5 33 33 H 1.07997 * 119.83303 * 179.97438 * 8 7 6 34 34 H 1.08007 * 120.05636 * 179.97438 * 9 8 7 35 35 H 0.96995 * 120.00019 * 180.02562 * 14 13 11 36 36 H 1.08010 * 120.15640 * 0.02562 * 19 6 5 37 37 H 1.09002 * 117.49504 * 359.97438 * 22 20 3 38 38 H 1.08996 * 117.49856 * 144.99169 * 22 20 3 39 39 H 1.08998 * 109.47609 * 59.99808 * 25 23 20 40 40 H 1.09007 * 109.47106 * 179.97438 * 25 23 20 41 41 H 1.09001 * 109.47697 * 299.99537 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6141 1.9785 0.8482 5 7 1.6393 2.1021 -1.2453 6 6 0.4935 2.9003 -1.2756 7 6 -0.2420 3.1062 -0.1101 8 6 -1.3792 3.8961 -0.1289 9 6 -1.7962 4.4866 -1.3006 10 6 -1.0635 4.2878 -2.4859 11 6 -1.4855 4.8915 -3.6930 12 1 -0.7630 5.1267 -4.4605 13 6 -2.8398 5.1791 -3.8953 14 7 -3.7426 4.6734 -3.0947 15 14 -3.3589 6.2849 -5.3085 16 1 -3.6094 5.4591 -6.5171 17 1 -4.6007 7.0105 -4.9388 18 1 -2.2794 7.2640 -5.5931 19 6 0.0873 3.4804 -2.4633 20 6 3.5660 1.4440 0.1098 21 1 4.0741 0.6193 -0.3901 22 6 4.1803 1.9686 1.4092 23 6 4.2717 2.8015 0.1281 24 1 5.2441 2.8697 -0.3594 25 6 3.3972 4.0535 0.0357 26 1 -0.3634 0.5812 0.8474 27 1 -0.3633 0.4432 -0.9272 28 1 -0.3633 -1.0246 0.0796 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.1698 1.9844 -2.0489 32 1 0.0776 2.6474 0.8139 33 1 -1.9422 4.0489 0.7799 34 1 -2.6840 5.1015 -1.3104 35 1 -4.6815 4.8724 -3.2352 36 1 0.6538 3.3175 -3.3684 37 1 3.4972 2.3131 2.1856 38 1 5.0924 1.4891 1.7642 39 1 2.7059 4.0769 0.8781 40 1 4.0296 4.9410 0.0603 41 1 2.8331 4.0348 -0.8968 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000322199711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:05 Heat of formation + Delta-G solvation = 19.806126 kcal Electronic energy + Delta-G solvation = -19557.236527 eV Core-core repulsion = 16822.303808 eV Total energy + Delta-G solvation = -2734.932718 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.42197 -38.82520 -36.44439 -35.03868 -33.23375 -31.58624 -29.83008 -29.15844 -27.10704 -26.58456 -23.08082 -22.84205 -22.13249 -21.62144 -20.20782 -19.11809 -17.40272 -16.87075 -16.70503 -16.40139 -15.91909 -15.24340 -15.09942 -14.54168 -14.44496 -13.98660 -13.91863 -13.67486 -13.43091 -13.18249 -13.01006 -12.79663 -12.76224 -12.54086 -12.30078 -12.22329 -12.07318 -11.89253 -11.62735 -11.50798 -11.13435 -11.09463 -10.89917 -10.66197 -10.16513 -9.24728 -8.53859 -7.79622 -6.29953 1.09271 1.38150 1.41301 1.52216 1.62153 2.24403 2.60285 2.86992 3.22091 3.66058 3.87560 3.94562 4.13131 4.23419 4.34059 4.43352 4.52179 4.53058 4.59282 4.78689 4.88084 4.95351 4.96358 5.05132 5.07723 5.14322 5.17426 5.20988 5.22152 5.28428 5.32985 5.44871 5.48491 5.53437 5.55857 5.67476 6.01962 6.08301 6.25825 6.38467 6.70478 6.97701 7.07248 7.13792 7.34018 8.43822 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.029157 B = 0.005103 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.074570 B = 5485.701514 C = 5860.716259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.186 3.814 4 H 0.069 0.931 5 N -0.737 5.737 6 C 0.253 3.747 7 C -0.289 4.289 8 C -0.080 4.080 9 C -0.230 4.230 10 C 0.113 3.887 11 C -0.505 4.505 12 H 0.069 0.931 13 C 0.034 3.966 14 N -0.832 5.832 15 Si 0.980 3.020 16 H -0.263 1.263 17 H -0.267 1.267 18 H -0.260 1.260 19 C -0.310 4.310 20 C -0.163 4.163 21 H 0.117 0.883 22 C -0.158 4.158 23 C -0.146 4.146 24 H 0.112 0.888 25 C -0.120 4.120 26 H 0.047 0.953 27 H 0.030 0.970 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.392 0.608 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.284 0.716 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.040 0.960 40 H 0.055 0.945 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.866 -6.113 6.422 14.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.081 3.919 4 H 0.087 0.913 5 N -0.367 5.367 6 C 0.151 3.849 7 C -0.312 4.312 8 C -0.099 4.099 9 C -0.251 4.251 10 C 0.110 3.890 11 C -0.535 4.535 12 H 0.087 0.913 13 C -0.180 4.180 14 N -0.459 5.459 15 Si 0.801 3.199 16 H -0.188 1.188 17 H -0.191 1.191 18 H -0.184 1.184 19 C -0.334 4.334 20 C -0.182 4.182 21 H 0.135 0.865 22 C -0.195 4.195 23 C -0.164 4.164 24 H 0.130 0.870 25 C -0.177 4.177 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.226 0.774 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.132 0.868 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.619 -6.199 6.659 14.757 hybrid contribution -0.586 0.520 -1.061 1.319 sum 11.034 -5.679 5.598 13.614 Atomic orbital electron populations 1.21713 0.96732 1.00763 1.01002 1.21935 0.95249 0.96611 1.02559 1.20432 0.91636 0.92436 0.87389 0.91287 1.44500 1.26646 1.53691 1.11862 1.17309 0.86236 0.88730 0.92598 1.20120 1.01401 1.13111 0.96577 1.20708 0.95960 0.96677 0.96505 1.21061 1.03449 1.07851 0.92717 1.17670 0.90368 0.87991 0.92951 1.19774 0.93684 1.37883 1.02195 0.91301 1.26706 0.96108 0.95290 0.99856 1.69919 1.02649 1.36339 1.37017 0.85241 0.78363 0.78529 0.77733 1.18818 1.19129 1.18402 1.20536 1.05283 1.11538 0.96038 1.22664 0.93923 0.98327 1.03277 0.86459 1.23198 1.02989 1.02896 0.90445 1.22265 1.00265 0.91529 1.02388 0.87030 1.21328 0.98462 0.96232 1.01702 0.93430 0.95110 0.92411 0.91819 0.89727 0.77407 0.87193 0.88025 0.88992 0.90603 0.89570 0.89212 0.86772 0.94044 0.92562 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.28 8.58 71.98 0.62 -3.66 16 2 C -0.12 -3.01 5.60 30.59 0.17 -2.84 16 3 C 0.19 4.92 1.69 44.99 0.08 4.99 16 4 H 0.07 2.04 5.38 -2.39 -0.01 2.03 16 5 N -0.74 -24.12 3.15 -319.11 -1.01 -25.12 16 6 C 0.25 10.79 4.87 38.17 0.19 10.98 16 7 C -0.29 -12.51 7.92 22.59 0.18 -12.33 16 8 C -0.08 -3.84 10.01 22.19 0.22 -3.62 16 9 C -0.23 -12.75 8.67 22.75 0.20 -12.56 16 10 C 0.11 6.39 5.55 -21.31 -0.12 6.27 16 11 C -0.50 -28.69 9.06 23.46 0.21 -28.48 16 12 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 13 C 0.03 1.79 5.22 85.25 0.45 2.24 16 14 N -0.83 -45.94 10.87 21.82 0.24 -45.70 16 15 Si 0.98 40.20 29.58 68.60 2.03 42.23 16 16 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 17 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 18 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 19 C -0.31 -15.61 9.63 22.86 0.22 -15.39 16 20 C -0.16 -3.40 5.29 -10.79 -0.06 -3.46 16 21 H 0.12 2.10 8.11 -2.39 -0.02 2.09 16 22 C -0.16 -2.90 9.83 30.62 0.30 -2.60 16 23 C -0.15 -3.17 6.38 -10.77 -0.07 -3.24 16 24 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 25 C -0.12 -3.31 9.03 71.98 0.65 -2.66 16 26 H 0.05 1.45 7.01 -2.39 -0.02 1.43 16 27 H 0.03 1.12 6.91 -2.39 -0.02 1.10 16 28 H 0.06 1.48 8.14 -2.38 -0.02 1.47 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.39 12.19 8.73 -92.70 -0.81 11.38 16 32 H 0.11 4.21 5.01 -2.91 -0.01 4.20 16 33 H 0.10 4.40 8.06 -2.91 -0.02 4.37 16 34 H 0.09 5.40 6.21 -2.91 -0.02 5.38 16 35 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 36 H 0.09 4.22 8.06 -2.91 -0.02 4.19 16 37 H 0.09 1.75 7.96 -2.39 -0.02 1.73 16 38 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.04 1.22 7.77 -2.39 -0.02 1.20 16 40 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.05 1.72 6.06 -2.39 -0.01 1.70 16 Total: -1.00 -61.09 322.55 4.70 -56.39 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: 0.21 Total: 38.57 kcal Atomic # 6 Polarization: -69.59 SS G_CDS: 3.23 Total: -66.36 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: -0.77 Total: -70.83 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -61.09 4.70 -56.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322199711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.199 kcal (2) G-P(sol) polarization free energy of solvation -61.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds