Wall clock time and date at job start Mon Mar 30 2020 07:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47557 * 2 1 4 4 N 1.46502 * 109.47157 * 119.99765 * 2 1 3 5 5 C 1.36936 * 120.00039 * 295.58233 * 4 2 1 6 6 H 1.08006 * 119.99654 * 313.67384 * 5 4 2 7 7 C 1.38806 * 120.00446 * 133.67477 * 5 4 2 8 8 N 1.31627 * 119.99842 * 2.13347 * 7 5 4 9 9 Si 1.86801 * 120.00406 * 182.13338 * 7 5 4 10 10 H 1.48502 * 109.46790 * 59.99936 * 9 7 5 11 11 H 1.48499 * 109.47219 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47057 * 299.99982 * 9 7 5 13 13 C 1.46501 * 120.00063 * 115.57927 * 4 2 1 14 14 C 1.53001 * 109.47279 * 90.00285 * 13 4 2 15 15 C 1.50693 * 109.46911 * 180.02562 * 14 13 4 16 16 C 1.32567 * 119.99868 * 127.64926 * 15 14 13 17 17 C 1.47809 * 120.00172 * 7.27853 * 16 15 14 18 18 C 1.39538 * 120.13962 * 217.15772 * 17 16 15 19 19 C 1.37975 * 119.85275 * 180.02562 * 18 17 16 20 20 C 1.38345 * 120.14505 * 359.97438 * 19 18 17 21 21 C 1.38347 * 120.28202 * 0.02562 * 20 19 18 22 22 C 1.37972 * 120.14608 * 359.97438 * 21 20 19 23 23 H 1.09005 * 109.47171 * 305.04579 * 1 2 3 24 24 H 1.09000 * 109.47219 * 65.04057 * 1 2 3 25 25 H 1.08992 * 109.47513 * 185.04387 * 1 2 3 26 26 H 1.08996 * 109.47394 * 239.99812 * 2 1 3 27 27 H 1.08997 * 109.47142 * 184.51904 * 3 2 1 28 28 H 1.09002 * 109.46890 * 304.51808 * 3 2 1 29 29 H 1.09000 * 109.47149 * 64.51296 * 3 2 1 30 30 H 0.96997 * 119.99555 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47195 * 330.00005 * 13 4 2 32 32 H 1.09006 * 109.46893 * 210.00632 * 13 4 2 33 33 H 1.08991 * 109.47006 * 59.99732 * 14 13 4 34 34 H 1.08995 * 109.46732 * 299.99966 * 14 13 4 35 35 H 1.08001 * 120.00355 * 307.64435 * 15 14 13 36 36 H 1.07999 * 119.99839 * 187.27717 * 16 15 14 37 37 H 1.07995 * 120.07287 * 0.04575 * 18 17 16 38 38 H 1.08001 * 119.92804 * 179.73044 * 19 18 17 39 39 H 1.07993 * 119.85647 * 180.02562 * 20 19 18 40 40 H 1.08004 * 119.92672 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.07620 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7637 -0.1723 2.4379 6 1 1.9207 0.8795 2.6265 7 6 1.3040 -0.9986 3.4540 8 7 1.1527 -2.2879 3.2362 9 14 0.8999 -0.2810 5.1307 10 1 -0.1687 0.7402 4.9876 11 1 0.4316 -1.3638 6.0327 12 1 2.1151 0.3510 5.7045 13 6 2.7789 -1.9356 1.0640 14 6 4.2704 -1.6129 0.9539 15 6 5.0527 -2.8936 0.8173 16 6 5.9157 -3.0402 -0.1783 17 6 6.2306 -1.8950 -1.0580 18 6 6.4395 -2.0966 -2.4229 19 6 6.7336 -1.0234 -3.2386 20 6 6.8212 0.2505 -2.7062 21 6 6.6152 0.4571 -1.3538 22 6 6.3204 -0.6076 -0.5272 23 1 -0.3634 0.5901 0.8414 24 1 -0.3634 0.4336 -0.9317 25 1 -0.3634 -1.0236 0.0903 26 1 1.8933 -0.5138 -0.8899 27 1 3.1270 1.4435 -0.0810 28 1 1.6121 1.9792 -0.8468 29 1 1.7443 1.9325 0.9277 30 1 0.8310 -2.8652 3.9461 31 1 2.4548 -2.4661 0.1687 32 1 2.6062 -2.5616 1.9396 33 1 4.5944 -1.0825 1.8492 34 1 4.4429 -0.9870 0.0783 35 1 4.9103 -3.6921 1.5304 36 1 6.3887 -3.9964 -0.3465 37 1 6.3707 -3.0904 -2.8399 38 1 6.8998 -1.1786 -4.2944 39 1 7.0513 1.0872 -3.3490 40 1 6.6845 1.4540 -0.9443 41 1 6.1594 -0.4451 0.5282 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323687851.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:38 Heat of formation + Delta-G solvation = 52.082473 kcal Electronic energy + Delta-G solvation = -19481.429953 eV Core-core repulsion = 16747.896842 eV Total energy + Delta-G solvation = -2733.533111 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.12125 -36.64947 -34.80045 -32.33369 -31.09674 -30.55365 -29.13284 -27.21889 -26.14993 -24.38994 -22.56444 -22.23608 -20.88620 -19.46399 -18.77010 -16.21204 -16.09947 -15.30751 -14.99579 -14.87968 -14.16984 -14.02712 -13.58305 -13.23370 -13.14230 -12.53415 -12.48942 -12.31381 -12.11476 -11.54539 -11.45415 -11.20835 -10.93162 -10.89731 -10.79896 -10.71292 -10.50176 -10.26301 -10.09474 -9.91404 -9.59533 -9.45601 -9.19057 -8.60814 -8.42302 -7.83027 -6.34802 -5.65617 -3.44214 1.34016 1.63528 2.80466 3.37483 3.42651 3.44348 4.10329 4.49010 5.07595 5.11001 5.16413 5.32953 5.39525 5.40949 5.66524 5.69188 5.84464 5.98991 6.03636 6.19581 6.22916 6.25881 6.39757 6.45384 6.50550 6.59347 6.64564 6.70822 6.77180 6.79988 6.86415 6.87355 6.90502 7.07109 7.14849 7.26114 7.27422 7.38968 7.45323 7.79822 8.03297 8.69722 9.32856 9.88388 10.51740 11.26674 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.022337 B = 0.005786 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.217340 B = 4838.194266 C = 5331.728715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.165 3.835 3 C -0.152 4.152 4 N -0.581 5.581 5 C -0.249 4.249 6 H 0.056 0.944 7 C 0.019 3.981 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.283 1.283 13 C 0.145 3.855 14 C -0.130 4.130 15 C -0.096 4.096 16 C -0.174 4.174 17 C -0.036 4.036 18 C -0.120 4.120 19 C -0.126 4.126 20 C -0.130 4.130 21 C -0.122 4.122 22 C -0.103 4.103 23 H 0.053 0.947 24 H 0.028 0.972 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.034 0.966 29 H 0.056 0.944 30 H 0.255 0.745 31 H 0.016 0.984 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.986 1.404 -9.155 12.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.058 3.942 3 C -0.211 4.211 4 N -0.301 5.301 5 C -0.380 4.380 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.209 1.209 13 C 0.019 3.981 14 C -0.169 4.169 15 C -0.115 4.115 16 C -0.192 4.192 17 C -0.036 4.036 18 C -0.138 4.138 19 C -0.144 4.144 20 C -0.149 4.149 21 C -0.140 4.140 22 C -0.121 4.121 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.128 0.872 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.895 1.265 -9.040 12.745 hybrid contribution -0.278 0.280 0.905 0.988 sum 8.617 1.545 -8.134 11.950 Atomic orbital electron populations 1.22115 0.98452 1.01185 0.98957 1.20379 0.92079 0.91808 0.89930 1.22130 0.99887 0.98775 1.00323 1.43759 1.59828 1.25575 1.00919 1.18872 1.37971 0.93735 0.87401 0.92630 1.25529 0.97629 0.95815 0.99081 1.69664 1.48363 1.03141 1.32529 0.86510 0.78642 0.78292 0.84116 1.20782 1.21627 1.20907 1.21158 0.85613 0.89810 1.01508 1.21925 0.99446 0.94078 1.01429 1.23623 0.93179 0.99721 0.94985 1.21469 1.03009 0.96705 0.98049 1.19084 0.97865 0.93484 0.93162 1.21219 1.00668 0.98790 0.93080 1.20985 1.01130 0.92981 0.99333 1.21091 1.01547 0.96854 0.95361 1.21073 1.00255 0.98867 0.93854 1.21545 0.97970 0.91946 1.00666 0.92806 0.95346 0.93370 0.93878 0.93971 0.94670 0.92500 0.93488 0.96598 0.87197 0.91305 0.91663 0.86996 0.87068 0.86415 0.86611 0.86694 0.86346 0.85227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.16 37.15 0.34 -2.75 16 2 C 0.17 3.55 3.35 -67.93 -0.23 3.32 16 3 C -0.15 -2.94 9.16 37.16 0.34 -2.60 16 4 N -0.58 -14.13 2.36 -165.66 -0.39 -14.52 16 5 C -0.25 -6.58 8.31 -15.06 -0.13 -6.71 16 6 H 0.06 1.48 6.70 -52.48 -0.35 1.13 16 7 C 0.02 0.51 5.37 -17.43 -0.09 0.42 16 8 N -0.89 -25.00 10.85 55.49 0.60 -24.40 16 9 Si 0.90 21.24 29.55 -169.99 -5.02 16.22 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.15 3.39 5.22 -4.04 -0.02 3.37 16 14 C -0.13 -2.57 4.26 -27.89 -0.12 -2.69 16 15 C -0.10 -1.64 9.47 -36.22 -0.34 -1.99 16 16 C -0.17 -2.67 9.80 -37.58 -0.37 -3.04 16 17 C -0.04 -0.55 5.20 -105.01 -0.55 -1.10 16 18 C -0.12 -1.65 9.79 -39.19 -0.38 -2.03 16 19 C -0.13 -1.59 10.03 -39.64 -0.40 -1.99 16 20 C -0.13 -1.65 10.04 -39.50 -0.40 -2.05 16 21 C -0.12 -1.70 10.03 -39.64 -0.40 -2.10 16 22 C -0.10 -1.60 7.30 -39.20 -0.29 -1.89 16 23 H 0.05 1.18 7.91 -51.93 -0.41 0.77 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.04 0.91 7.83 -51.93 -0.41 0.50 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.16 6.76 -51.93 -0.35 0.81 16 30 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.02 0.37 7.96 -51.93 -0.41 -0.05 16 32 H 0.11 2.88 5.28 -51.93 -0.27 2.61 16 33 H 0.07 1.46 7.97 -51.93 -0.41 1.05 16 34 H 0.07 1.28 4.73 -51.93 -0.25 1.03 16 35 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 41 H 0.13 2.08 6.19 -52.49 -0.33 1.75 16 LS Contribution 331.12 15.07 4.99 4.99 Total: -1.00 -27.79 331.12 -9.40 -37.19 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.56 Total: 4.33 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -3.02 Total: -23.81 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.21 Total: -38.92 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.79 -9.40 -37.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323687851.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.273 kcal (2) G-P(sol) polarization free energy of solvation -27.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds