Wall clock time and date at job start Mon Mar 30 2020 07:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47557 * 2 1 4 4 N 1.46502 * 109.47157 * 119.99765 * 2 1 3 5 5 C 1.36936 * 120.00039 * 295.58233 * 4 2 1 6 6 H 1.08006 * 119.99654 * 313.67384 * 5 4 2 7 7 C 1.38806 * 120.00446 * 133.67477 * 5 4 2 8 8 N 1.31627 * 119.99842 * 2.13347 * 7 5 4 9 9 Si 1.86801 * 120.00406 * 182.13338 * 7 5 4 10 10 H 1.48502 * 109.46790 * 59.99936 * 9 7 5 11 11 H 1.48499 * 109.47219 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47057 * 299.99982 * 9 7 5 13 13 C 1.46501 * 120.00063 * 115.57927 * 4 2 1 14 14 C 1.53001 * 109.47279 * 90.00285 * 13 4 2 15 15 C 1.50693 * 109.46911 * 180.02562 * 14 13 4 16 16 C 1.32567 * 119.99868 * 127.64926 * 15 14 13 17 17 C 1.47809 * 120.00172 * 7.27853 * 16 15 14 18 18 C 1.39538 * 120.13962 * 217.15772 * 17 16 15 19 19 C 1.37975 * 119.85275 * 180.02562 * 18 17 16 20 20 C 1.38345 * 120.14505 * 359.97438 * 19 18 17 21 21 C 1.38347 * 120.28202 * 0.02562 * 20 19 18 22 22 C 1.37972 * 120.14608 * 359.97438 * 21 20 19 23 23 H 1.09005 * 109.47171 * 305.04579 * 1 2 3 24 24 H 1.09000 * 109.47219 * 65.04057 * 1 2 3 25 25 H 1.08992 * 109.47513 * 185.04387 * 1 2 3 26 26 H 1.08996 * 109.47394 * 239.99812 * 2 1 3 27 27 H 1.08997 * 109.47142 * 184.51904 * 3 2 1 28 28 H 1.09002 * 109.46890 * 304.51808 * 3 2 1 29 29 H 1.09000 * 109.47149 * 64.51296 * 3 2 1 30 30 H 0.96997 * 119.99555 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47195 * 330.00005 * 13 4 2 32 32 H 1.09006 * 109.46893 * 210.00632 * 13 4 2 33 33 H 1.08991 * 109.47006 * 59.99732 * 14 13 4 34 34 H 1.08995 * 109.46732 * 299.99966 * 14 13 4 35 35 H 1.08001 * 120.00355 * 307.64435 * 15 14 13 36 36 H 1.07999 * 119.99839 * 187.27717 * 16 15 14 37 37 H 1.07995 * 120.07287 * 0.04575 * 18 17 16 38 38 H 1.08001 * 119.92804 * 179.73044 * 19 18 17 39 39 H 1.07993 * 119.85647 * 180.02562 * 20 19 18 40 40 H 1.08004 * 119.92672 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.07620 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7637 -0.1723 2.4379 6 1 1.9207 0.8795 2.6265 7 6 1.3040 -0.9986 3.4540 8 7 1.1527 -2.2879 3.2362 9 14 0.8999 -0.2810 5.1307 10 1 -0.1687 0.7402 4.9876 11 1 0.4316 -1.3638 6.0327 12 1 2.1151 0.3510 5.7045 13 6 2.7789 -1.9356 1.0640 14 6 4.2704 -1.6129 0.9539 15 6 5.0527 -2.8936 0.8173 16 6 5.9157 -3.0402 -0.1783 17 6 6.2306 -1.8950 -1.0580 18 6 6.4395 -2.0966 -2.4229 19 6 6.7336 -1.0234 -3.2386 20 6 6.8212 0.2505 -2.7062 21 6 6.6152 0.4571 -1.3538 22 6 6.3204 -0.6076 -0.5272 23 1 -0.3634 0.5901 0.8414 24 1 -0.3634 0.4336 -0.9317 25 1 -0.3634 -1.0236 0.0903 26 1 1.8933 -0.5138 -0.8899 27 1 3.1270 1.4435 -0.0810 28 1 1.6121 1.9792 -0.8468 29 1 1.7443 1.9325 0.9277 30 1 0.8310 -2.8652 3.9461 31 1 2.4548 -2.4661 0.1687 32 1 2.6062 -2.5616 1.9396 33 1 4.5944 -1.0825 1.8492 34 1 4.4429 -0.9870 0.0783 35 1 4.9103 -3.6921 1.5304 36 1 6.3887 -3.9964 -0.3465 37 1 6.3707 -3.0904 -2.8399 38 1 6.8998 -1.1786 -4.2944 39 1 7.0513 1.0872 -3.3490 40 1 6.6845 1.4540 -0.9443 41 1 6.1594 -0.4451 0.5282 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323687851.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:38 Heat of formation + Delta-G solvation = 40.654317 kcal Electronic energy + Delta-G solvation = -19481.925515 eV Core-core repulsion = 16747.896842 eV Total energy + Delta-G solvation = -2734.028673 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.23402 -38.40593 -36.15569 -34.23209 -32.56839 -31.75145 -30.57185 -28.83606 -27.78834 -26.22570 -23.97433 -23.31644 -22.37720 -21.31625 -20.01258 -18.09424 -17.24581 -16.92183 -16.49139 -16.20142 -15.83006 -15.46453 -15.16529 -14.59836 -14.34719 -14.21488 -14.01534 -13.70722 -13.40635 -13.23098 -13.08842 -12.75250 -12.71007 -12.59033 -12.45704 -12.20583 -11.94209 -11.79161 -11.75980 -11.62504 -11.28007 -11.18751 -10.55197 -10.45779 -9.69628 -9.04198 -8.32611 -7.65904 -5.50229 0.21258 0.57795 1.46964 1.47824 1.53813 1.57772 2.52294 3.02318 3.34553 3.68873 3.95173 4.09311 4.17960 4.30546 4.34024 4.39866 4.53512 4.58975 4.65502 4.70095 4.76652 4.81842 4.94325 5.01688 5.11646 5.14826 5.16690 5.19245 5.20260 5.28528 5.40797 5.54433 5.58994 5.65045 5.66378 5.68303 5.75122 5.82049 6.02633 6.08311 6.20869 6.65087 7.31398 7.95628 8.52355 9.21160 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.022337 B = 0.005786 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.217340 B = 4838.194266 C = 5331.728715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.157 3.843 3 C -0.140 4.140 4 N -0.595 5.595 5 C -0.250 4.250 6 H 0.052 0.948 7 C -0.030 4.030 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.278 1.278 11 H -0.294 1.294 12 H -0.279 1.279 13 C 0.147 3.853 14 C -0.105 4.105 15 C -0.129 4.129 16 C -0.143 4.143 17 C -0.066 4.066 18 C -0.123 4.123 19 C -0.126 4.126 20 C -0.127 4.127 21 C -0.133 4.133 22 C -0.122 4.122 23 H 0.036 0.964 24 H 0.064 0.936 25 H 0.023 0.977 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.041 0.959 30 H 0.249 0.751 31 H 0.008 0.992 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.131 0.869 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.008 2.375 -11.352 15.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.051 3.949 3 C -0.199 4.199 4 N -0.317 5.317 5 C -0.381 4.381 6 H 0.070 0.930 7 C -0.226 4.226 8 N -0.565 5.565 9 Si 0.780 3.220 10 H -0.204 1.204 11 H -0.220 1.220 12 H -0.205 1.205 13 C 0.022 3.978 14 C -0.144 4.144 15 C -0.148 4.148 16 C -0.161 4.161 17 C -0.066 4.066 18 C -0.141 4.141 19 C -0.144 4.144 20 C -0.145 4.145 21 C -0.151 4.151 22 C -0.140 4.140 23 H 0.056 0.944 24 H 0.083 0.917 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.027 0.973 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.131 0.869 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.149 0.851 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.927 2.251 -11.249 15.170 hybrid contribution -0.504 0.016 1.419 1.506 sum 9.423 2.267 -9.830 13.804 Atomic orbital electron populations 1.22010 0.97977 0.99620 1.00129 1.20574 0.92490 0.92960 0.88917 1.21978 0.99894 0.97148 1.00843 1.43963 1.60656 1.25733 1.01312 1.19014 1.37072 0.93528 0.88460 0.93048 1.26135 0.98195 0.96117 1.02200 1.69852 1.49539 1.04011 1.33102 0.85602 0.78392 0.77422 0.80545 1.20390 1.21980 1.20461 1.20999 0.87937 0.89288 0.99621 1.21527 0.97184 0.95290 1.00391 1.23406 0.95408 0.98878 0.97115 1.21764 1.00566 0.97688 0.96084 1.19245 0.99718 0.93304 0.94289 1.21506 0.99872 1.00325 0.92363 1.21397 0.99727 0.92471 1.00804 1.21485 0.99907 0.98049 0.95014 1.21311 1.00204 0.99008 0.94601 1.21539 0.99335 0.92886 1.00265 0.94442 0.91710 0.95771 0.93363 0.94046 0.91558 0.94011 0.94077 0.97306 0.90187 0.93808 0.91295 0.86913 0.84512 0.84543 0.83501 0.83817 0.85126 0.86975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.69 9.16 71.98 0.66 -5.03 16 2 C 0.16 6.67 3.35 44.99 0.15 6.83 16 3 C -0.14 -5.19 9.16 71.98 0.66 -4.53 16 4 N -0.60 -29.63 2.36 -678.03 -1.60 -31.23 16 5 C -0.25 -13.48 8.31 84.03 0.70 -12.78 16 6 H 0.05 2.78 6.70 -2.91 -0.02 2.76 16 7 C -0.03 -1.64 5.37 84.86 0.46 -1.19 16 8 N -0.92 -53.30 10.85 21.65 0.23 -53.06 16 9 Si 0.95 44.55 29.55 68.60 2.03 46.58 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.15 7.15 5.22 86.38 0.45 7.60 16 14 C -0.10 -4.31 4.26 29.85 0.13 -4.18 16 15 C -0.13 -4.51 9.47 24.53 0.23 -4.28 16 16 C -0.14 -4.26 9.80 23.65 0.23 -4.03 16 17 C -0.07 -1.94 5.20 -20.12 -0.10 -2.04 16 18 C -0.12 -3.04 9.79 22.52 0.22 -2.82 16 19 C -0.13 -2.70 10.03 22.23 0.22 -2.48 16 20 C -0.13 -2.78 10.04 22.32 0.22 -2.56 16 21 C -0.13 -3.46 10.03 22.23 0.22 -3.24 16 22 C -0.12 -3.73 7.30 22.52 0.16 -3.57 16 23 H 0.04 1.63 7.91 -2.38 -0.02 1.61 16 24 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 1.99 7.83 -2.39 -0.02 1.97 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.04 1.66 6.76 -2.39 -0.02 1.64 16 30 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.01 0.41 7.96 -2.39 -0.02 0.39 16 32 H 0.08 4.42 5.28 -2.38 -0.01 4.41 16 33 H 0.04 1.96 7.97 -2.39 -0.02 1.94 16 34 H 0.07 2.76 4.73 -2.39 -0.01 2.75 16 35 H 0.11 3.84 8.06 -2.91 -0.02 3.82 16 36 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 37 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 38 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 40 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 41 H 0.11 3.72 6.19 -2.91 -0.02 3.71 16 Total: -1.00 -60.93 331.12 6.26 -54.67 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.98 Total: 21.34 kcal Atomic # 6 Polarization: -42.92 SS G_CDS: 4.62 Total: -38.30 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -1.36 Total: -84.29 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -60.93 6.26 -54.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323687851.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.327 kcal (2) G-P(sol) polarization free energy of solvation -60.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds