Wall clock time and date at job start Mon Mar 30 2020 07:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47330 * 2 1 4 4 H 1.09000 * 109.46905 * 54.58475 * 3 2 1 5 5 N 1.46895 * 109.47308 * 294.58518 * 3 2 1 6 6 C 1.46909 * 110.99617 * 102.69751 * 5 3 2 7 7 H 1.09000 * 109.46998 * 325.19570 * 6 5 3 8 8 C 1.50693 * 109.47331 * 85.20096 * 6 5 3 9 9 H 1.08005 * 119.99964 * 65.19186 * 8 6 5 10 10 C 1.37871 * 120.00210 * 245.19851 * 8 6 5 11 11 N 1.31519 * 120.00521 * 173.39060 * 10 8 6 12 12 Si 1.86806 * 119.99774 * 353.38322 * 10 8 6 13 13 H 1.48502 * 109.46810 * 86.33044 * 12 10 8 14 14 H 1.48504 * 109.47305 * 206.32876 * 12 10 8 15 15 H 1.48493 * 109.47340 * 326.33124 * 12 10 8 16 16 C 1.50707 * 109.46837 * 205.20068 * 6 5 3 17 17 C 1.38237 * 119.99632 * 315.66115 * 16 6 5 18 18 C 1.38241 * 119.99375 * 179.79124 * 17 16 6 19 19 C 1.38224 * 120.00305 * 0.43588 * 18 17 16 20 20 C 1.38238 * 120.00121 * 359.81850 * 19 18 17 21 21 C 1.38233 * 119.99961 * 359.97110 * 20 19 18 22 22 C 1.53000 * 109.47406 * 174.58122 * 3 2 1 23 23 C 1.52995 * 117.49908 * 184.99995 * 22 3 2 24 24 C 1.53003 * 60.03614 * 252.50518 * 23 22 3 25 25 H 1.09006 * 109.47313 * 300.61883 * 1 2 3 26 26 H 1.08997 * 109.47663 * 60.62420 * 1 2 3 27 27 H 1.09003 * 109.47248 * 180.62528 * 1 2 3 28 28 H 1.08998 * 109.47045 * 239.99925 * 2 1 3 29 29 H 1.09011 * 109.47259 * 120.00120 * 2 1 3 30 30 H 1.00897 * 110.99916 * 338.74812 * 5 3 2 31 31 H 0.96999 * 119.99973 * 179.97438 * 11 10 8 32 32 H 1.08002 * 120.00291 * 359.97438 * 17 16 6 33 33 H 1.08006 * 119.99431 * 180.27113 * 18 17 16 34 34 H 1.08002 * 120.00304 * 179.83667 * 19 18 17 35 35 H 1.08000 * 120.00099 * 179.97438 * 20 19 18 36 36 H 1.07997 * 120.00336 * 180.02562 * 21 20 19 37 37 H 1.08994 * 115.55434 * 330.67740 * 22 3 2 38 38 H 1.09001 * 117.50361 * 0.02562 * 23 22 3 39 39 H 1.09006 * 117.49879 * 145.00541 * 23 22 3 40 40 H 1.08993 * 117.50203 * 107.50106 * 24 23 22 41 41 H 1.09001 * 117.49382 * 252.52903 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5996 1.9835 0.8375 5 7 1.6600 2.0962 -1.2594 6 6 0.5109 2.9901 -1.0626 7 1 -0.1580 2.5629 -0.3155 8 6 0.9967 4.3363 -0.5908 9 1 1.6049 4.9488 -1.2400 10 6 0.6649 4.7861 0.6695 11 7 1.1931 5.8986 1.1310 12 14 -0.5352 3.8153 1.7217 13 1 0.2013 2.7687 2.4749 14 1 -1.2089 4.7311 2.6771 15 1 -1.5520 3.1745 0.8496 16 6 -0.2290 3.1514 -2.3656 17 6 0.4732 3.3636 -3.5373 18 6 -0.2053 3.5072 -4.7332 19 6 -1.5861 3.4476 -4.7560 20 6 -2.2884 3.2406 -3.5834 21 6 -1.6099 3.0926 -2.3883 22 6 3.5639 1.4446 0.1362 23 6 4.2589 2.8006 0.2743 24 6 4.3772 2.0106 -1.0306 25 1 -0.3634 0.5234 0.8844 26 1 -0.3634 0.5041 -0.8955 27 1 -0.3634 -1.0276 0.0112 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.4685 1.4139 -1.9775 31 1 0.9593 6.2152 2.0176 32 1 1.5518 3.4143 -3.5189 33 1 0.3435 3.6687 -5.6493 34 1 -2.1163 3.5624 -5.6899 35 1 -3.3673 3.1944 -3.6012 36 1 -2.1585 2.9305 -1.4723 37 1 3.9881 0.6035 0.6845 38 1 3.6305 3.6912 0.2685 39 1 5.1404 2.8516 0.9135 40 1 3.8267 2.3813 -1.8952 41 1 5.3365 1.5414 -1.2496 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323732474.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:22 Heat of formation + Delta-G solvation = 45.315161 kcal Electronic energy + Delta-G solvation = -20210.896931 eV Core-core repulsion = 17477.070367 eV Total energy + Delta-G solvation = -2733.826564 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.92403 -37.69011 -34.79768 -33.08601 -31.72518 -30.27950 -29.57979 -27.04781 -25.47699 -22.55628 -21.97487 -21.60848 -21.08615 -19.80896 -19.09914 -17.02357 -16.27358 -15.15108 -14.96704 -14.77760 -14.29608 -13.99170 -13.84547 -13.56371 -12.89346 -12.75333 -12.60745 -12.28141 -12.18947 -11.83600 -11.70975 -11.20585 -11.05449 -10.85314 -10.66070 -10.56493 -10.42419 -10.23322 -10.11094 -9.78982 -9.56687 -9.33501 -9.04861 -8.64570 -8.27827 -7.93224 -7.23574 -6.14923 -4.10941 2.04120 2.08339 3.18043 3.24674 3.28492 4.30918 4.46117 4.63150 4.99667 5.20855 5.29232 5.46801 5.48346 5.49658 5.55873 5.68658 5.76780 5.85538 5.89518 5.96363 6.12281 6.16292 6.22559 6.24287 6.28197 6.36140 6.42232 6.53283 6.54939 6.65993 6.68358 6.80391 6.80850 7.09033 7.10443 7.16515 7.31869 7.43469 7.52481 7.71251 8.07336 8.35275 8.65927 8.98176 9.47824 10.97655 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.009558 C = 0.008109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.021147 B = 2928.752772 C = 3452.319045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.143 4.143 3 C 0.120 3.880 4 H 0.075 0.925 5 N -0.666 5.666 6 C 0.209 3.791 7 H 0.024 0.976 8 C -0.474 4.474 9 H 0.080 0.920 10 C 0.077 3.923 11 N -0.888 5.888 12 Si 0.861 3.139 13 H -0.273 1.273 14 H -0.289 1.289 15 H -0.266 1.266 16 C -0.041 4.041 17 C -0.103 4.103 18 C -0.127 4.127 19 C -0.147 4.147 20 C -0.125 4.125 21 C -0.130 4.130 22 C -0.150 4.150 23 C -0.171 4.171 24 C -0.163 4.163 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.313 0.687 31 H 0.264 0.736 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.282 -9.610 -5.240 11.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.182 4.182 3 C 0.009 3.991 4 H 0.093 0.907 5 N -0.297 5.297 6 C 0.102 3.898 7 H 0.042 0.958 8 C -0.512 4.512 9 H 0.098 0.902 10 C -0.126 4.126 11 N -0.526 5.526 12 Si 0.689 3.311 13 H -0.199 1.199 14 H -0.215 1.215 15 H -0.192 1.192 16 C -0.043 4.043 17 C -0.121 4.121 18 C -0.145 4.145 19 C -0.165 4.165 20 C -0.143 4.143 21 C -0.149 4.149 22 C -0.169 4.169 23 C -0.208 4.208 24 C -0.200 4.200 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.131 0.869 31 H 0.074 0.926 32 H 0.144 0.856 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.103 0.897 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.131 0.869 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.817 -8.960 -5.004 10.295 hybrid contribution -1.428 -0.971 0.914 1.954 sum -2.245 -9.931 -4.090 10.972 Atomic orbital electron populations 1.21876 0.96462 1.00902 1.02192 1.22167 0.95554 0.98799 1.01657 1.20945 0.92825 0.91189 0.94104 0.90677 1.61104 1.40784 1.21318 1.06490 1.18885 0.87402 0.94053 0.89449 0.95802 1.20779 1.31279 0.99432 0.99749 0.90242 1.25038 0.95532 0.94868 0.97209 1.69882 1.42692 1.21989 1.18027 0.87170 0.82687 0.80383 0.80845 1.19890 1.21513 1.19154 1.20520 0.93212 0.94373 0.96155 1.21027 1.00402 0.99166 0.91552 1.21078 0.94289 1.01290 0.97857 1.20881 0.94449 1.03716 0.97486 1.20949 0.98897 1.01431 0.93014 1.21028 0.94491 1.02081 0.97308 1.22247 0.94061 0.96916 1.03680 1.22937 1.01615 0.96752 0.99493 1.22798 0.99095 1.03983 0.94154 0.93148 0.92295 0.93216 0.91956 0.92292 0.86883 0.92567 0.85639 0.87150 0.87386 0.87295 0.87200 0.89703 0.86439 0.91088 0.86869 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 8.81 37.15 0.33 -2.11 16 2 C -0.14 -2.20 5.20 -26.74 -0.14 -2.34 16 3 C 0.12 2.22 2.35 -67.72 -0.16 2.06 16 4 H 0.08 1.64 5.70 -51.93 -0.30 1.35 16 5 N -0.67 -12.71 3.60 -102.18 -0.37 -13.07 16 6 C 0.21 4.53 1.25 -70.01 -0.09 4.44 16 7 H 0.02 0.54 2.75 -51.93 -0.14 0.40 16 8 C -0.47 -12.40 8.67 -34.45 -0.30 -12.70 16 9 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 10 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 11 N -0.89 -25.95 13.96 55.43 0.77 -25.17 16 12 Si 0.86 20.67 25.64 -169.99 -4.36 16.31 16 13 H -0.27 -6.41 6.93 56.52 0.39 -6.01 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.27 -6.10 6.59 56.52 0.37 -5.73 16 16 C -0.04 -0.84 4.66 -104.62 -0.49 -1.33 16 17 C -0.10 -1.93 9.06 -39.58 -0.36 -2.28 16 18 C -0.13 -2.08 10.05 -39.59 -0.40 -2.48 16 19 C -0.15 -2.31 10.05 -39.59 -0.40 -2.71 16 20 C -0.12 -2.08 10.05 -39.58 -0.40 -2.47 16 21 C -0.13 -2.50 9.67 -39.58 -0.38 -2.88 16 22 C -0.15 -2.63 5.74 -90.58 -0.52 -3.15 16 23 C -0.17 -3.26 10.22 -26.73 -0.27 -3.54 16 24 C -0.16 -2.78 9.84 -26.69 -0.26 -3.05 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.96 6.62 -51.93 -0.34 0.62 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.88 8.03 -51.93 -0.42 0.47 16 29 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 30 H 0.31 5.51 7.28 -39.29 -0.29 5.22 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.13 2.35 7.86 -52.49 -0.41 1.94 16 33 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 34 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.11 2.11 8.01 -52.49 -0.42 1.69 16 37 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 38 H 0.12 2.74 7.90 -51.93 -0.41 2.33 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.11 2.07 6.91 -51.93 -0.36 1.71 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 325.29 15.07 4.90 4.90 Total: -1.00 -27.30 325.29 -9.47 -36.77 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -6.48 Total: 12.82 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: -3.93 Total: -32.56 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.41 Total: -38.25 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.36 Total: 16.31 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.30 -9.47 -36.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323732474.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.087 kcal (2) G-P(sol) polarization free energy of solvation -27.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds