Wall clock time and date at job start Mon Mar 30 2020 07:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47330 * 2 1 4 4 H 1.09000 * 109.46905 * 54.58475 * 3 2 1 5 5 N 1.46895 * 109.47308 * 294.58518 * 3 2 1 6 6 C 1.46909 * 110.99617 * 102.69751 * 5 3 2 7 7 H 1.09000 * 109.46998 * 325.19570 * 6 5 3 8 8 C 1.50693 * 109.47331 * 85.20096 * 6 5 3 9 9 H 1.08005 * 119.99964 * 65.19186 * 8 6 5 10 10 C 1.37871 * 120.00210 * 245.19851 * 8 6 5 11 11 N 1.31519 * 120.00521 * 173.39060 * 10 8 6 12 12 Si 1.86806 * 119.99774 * 353.38322 * 10 8 6 13 13 H 1.48502 * 109.46810 * 86.33044 * 12 10 8 14 14 H 1.48504 * 109.47305 * 206.32876 * 12 10 8 15 15 H 1.48493 * 109.47340 * 326.33124 * 12 10 8 16 16 C 1.50707 * 109.46837 * 205.20068 * 6 5 3 17 17 C 1.38237 * 119.99632 * 315.66115 * 16 6 5 18 18 C 1.38241 * 119.99375 * 179.79124 * 17 16 6 19 19 C 1.38224 * 120.00305 * 0.43588 * 18 17 16 20 20 C 1.38238 * 120.00121 * 359.81850 * 19 18 17 21 21 C 1.38233 * 119.99961 * 359.97110 * 20 19 18 22 22 C 1.53000 * 109.47406 * 174.58122 * 3 2 1 23 23 C 1.52995 * 117.49908 * 184.99995 * 22 3 2 24 24 C 1.53003 * 60.03614 * 252.50518 * 23 22 3 25 25 H 1.09006 * 109.47313 * 300.61883 * 1 2 3 26 26 H 1.08997 * 109.47663 * 60.62420 * 1 2 3 27 27 H 1.09003 * 109.47248 * 180.62528 * 1 2 3 28 28 H 1.08998 * 109.47045 * 239.99925 * 2 1 3 29 29 H 1.09011 * 109.47259 * 120.00120 * 2 1 3 30 30 H 1.00897 * 110.99916 * 338.74812 * 5 3 2 31 31 H 0.96999 * 119.99973 * 179.97438 * 11 10 8 32 32 H 1.08002 * 120.00291 * 359.97438 * 17 16 6 33 33 H 1.08006 * 119.99431 * 180.27113 * 18 17 16 34 34 H 1.08002 * 120.00304 * 179.83667 * 19 18 17 35 35 H 1.08000 * 120.00099 * 179.97438 * 20 19 18 36 36 H 1.07997 * 120.00336 * 180.02562 * 21 20 19 37 37 H 1.08994 * 115.55434 * 330.67740 * 22 3 2 38 38 H 1.09001 * 117.50361 * 0.02562 * 23 22 3 39 39 H 1.09006 * 117.49879 * 145.00541 * 23 22 3 40 40 H 1.08993 * 117.50203 * 107.50106 * 24 23 22 41 41 H 1.09001 * 117.49382 * 252.52903 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5996 1.9835 0.8375 5 7 1.6600 2.0962 -1.2594 6 6 0.5109 2.9901 -1.0626 7 1 -0.1580 2.5629 -0.3155 8 6 0.9967 4.3363 -0.5908 9 1 1.6049 4.9488 -1.2400 10 6 0.6649 4.7861 0.6695 11 7 1.1931 5.8986 1.1310 12 14 -0.5352 3.8153 1.7217 13 1 0.2013 2.7687 2.4749 14 1 -1.2089 4.7311 2.6771 15 1 -1.5520 3.1745 0.8496 16 6 -0.2290 3.1514 -2.3656 17 6 0.4732 3.3636 -3.5373 18 6 -0.2053 3.5072 -4.7332 19 6 -1.5861 3.4476 -4.7560 20 6 -2.2884 3.2406 -3.5834 21 6 -1.6099 3.0926 -2.3883 22 6 3.5639 1.4446 0.1362 23 6 4.2589 2.8006 0.2743 24 6 4.3772 2.0106 -1.0306 25 1 -0.3634 0.5234 0.8844 26 1 -0.3634 0.5041 -0.8955 27 1 -0.3634 -1.0276 0.0112 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.4685 1.4139 -1.9775 31 1 0.9593 6.2152 2.0176 32 1 1.5518 3.4143 -3.5189 33 1 0.3435 3.6687 -5.6493 34 1 -2.1163 3.5624 -5.6899 35 1 -3.3673 3.1944 -3.6012 36 1 -2.1585 2.9305 -1.4723 37 1 3.9881 0.6035 0.6845 38 1 3.6305 3.6912 0.2685 39 1 5.1404 2.8516 0.9135 40 1 3.8267 2.3813 -1.8952 41 1 5.3365 1.5414 -1.2496 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323732474.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:21 Heat of formation + Delta-G solvation = 31.074530 kcal Electronic energy + Delta-G solvation = -20211.514451 eV Core-core repulsion = 17477.070367 eV Total energy + Delta-G solvation = -2734.444084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.39535 -39.11284 -36.34138 -34.78624 -33.47385 -31.65643 -30.97731 -28.75283 -27.09801 -24.16943 -23.35341 -23.04097 -22.47277 -21.39646 -20.58543 -19.05005 -17.65948 -16.70769 -16.43797 -16.33118 -16.01135 -15.40136 -15.23630 -14.95581 -14.74827 -14.22652 -14.13729 -13.86062 -13.63439 -13.35169 -13.05020 -12.92214 -12.59846 -12.34400 -12.11354 -12.03490 -11.91621 -11.80620 -11.64192 -11.61539 -11.32205 -10.83635 -10.70185 -10.53115 -9.65342 -9.38432 -8.83339 -8.27859 -6.26174 0.65171 0.69701 1.23303 1.25338 1.32338 2.27518 2.94729 3.15560 3.18615 3.69123 3.85541 4.14746 4.18791 4.23591 4.27873 4.38099 4.40681 4.43436 4.46721 4.50928 4.65508 4.82112 4.87228 4.91505 4.94283 4.97691 5.02827 5.05992 5.17735 5.27059 5.33583 5.34881 5.38356 5.57081 5.64036 5.73181 5.74076 5.77368 5.97343 6.21708 6.32020 6.60394 6.75272 7.05870 7.36660 8.89097 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.009558 C = 0.008109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.021147 B = 2928.752772 C = 3452.319045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.134 4.134 3 C 0.114 3.886 4 H 0.037 0.963 5 N -0.665 5.665 6 C 0.221 3.779 7 H 0.019 0.981 8 C -0.462 4.462 9 H 0.030 0.970 10 C 0.024 3.976 11 N -0.941 5.941 12 Si 0.915 3.085 13 H -0.266 1.266 14 H -0.293 1.293 15 H -0.249 1.249 16 C -0.070 4.070 17 C -0.117 4.117 18 C -0.125 4.125 19 C -0.137 4.137 20 C -0.123 4.123 21 C -0.149 4.149 22 C -0.142 4.142 23 C -0.193 4.193 24 C -0.144 4.144 25 H 0.031 0.969 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.327 0.673 31 H 0.262 0.738 32 H 0.114 0.886 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 -12.528 -7.056 14.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.003 3.997 4 H 0.055 0.945 5 N -0.296 5.296 6 C 0.113 3.887 7 H 0.036 0.964 8 C -0.502 4.502 9 H 0.049 0.951 10 C -0.174 4.174 11 N -0.582 5.582 12 Si 0.741 3.259 13 H -0.191 1.191 14 H -0.220 1.220 15 H -0.173 1.173 16 C -0.071 4.071 17 C -0.135 4.135 18 C -0.142 4.142 19 C -0.155 4.155 20 C -0.140 4.140 21 C -0.168 4.168 22 C -0.161 4.161 23 C -0.230 4.230 24 C -0.181 4.181 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.146 0.854 31 H 0.071 0.929 32 H 0.132 0.868 33 H 0.158 0.842 34 H 0.165 0.835 35 H 0.157 0.843 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.820 -11.908 -6.843 13.854 hybrid contribution -1.083 -0.044 1.310 1.700 sum -2.903 -11.952 -5.533 13.487 Atomic orbital electron populations 1.21869 0.96527 1.02272 1.00683 1.22087 0.95430 0.96343 1.03443 1.20994 0.93544 0.92952 0.92166 0.94457 1.60806 1.39600 1.21789 1.07386 1.18571 0.87784 0.91889 0.90429 0.96367 1.20886 1.29651 1.00863 0.98754 0.95124 1.25697 0.97337 0.95772 0.98601 1.70038 1.45191 1.24403 1.18555 0.86282 0.81036 0.79159 0.79400 1.19106 1.21991 1.17293 1.20417 0.93957 0.96852 0.95834 1.21036 1.00061 1.00100 0.92329 1.21420 0.95100 0.99867 0.97859 1.21348 0.94181 1.01275 0.98706 1.21306 1.00538 0.99986 0.92214 1.21132 0.94042 1.03157 0.98433 1.22379 0.93453 0.96397 1.03841 1.22735 1.02146 0.95833 1.02324 1.22783 1.00171 1.02548 0.92625 0.94987 0.93510 0.90341 0.89930 0.90581 0.85436 0.92908 0.86773 0.84229 0.83517 0.84263 0.87871 0.86743 0.91895 0.89317 0.88499 0.88282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.52 8.81 71.98 0.63 -3.89 16 2 C -0.13 -3.80 5.20 30.59 0.16 -3.64 16 3 C 0.11 4.17 2.35 44.91 0.11 4.27 16 4 H 0.04 1.67 5.70 -2.39 -0.01 1.65 16 5 N -0.66 -25.67 3.60 -477.18 -1.72 -27.39 16 6 C 0.22 9.86 1.25 43.42 0.05 9.91 16 7 H 0.02 0.85 2.75 -2.39 -0.01 0.84 16 8 C -0.46 -25.77 8.67 25.60 0.22 -25.54 16 9 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 10 C 0.02 1.37 5.47 84.65 0.46 1.83 16 11 N -0.94 -58.71 13.96 21.45 0.30 -58.41 16 12 Si 0.92 44.37 25.64 68.60 1.76 46.13 16 13 H -0.27 -12.43 6.93 99.48 0.69 -11.74 16 14 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 15 H -0.25 -11.20 6.59 99.48 0.66 -10.54 16 16 C -0.07 -2.84 4.66 -19.86 -0.09 -2.93 16 17 C -0.12 -4.33 9.06 22.27 0.20 -4.13 16 18 C -0.12 -3.76 10.05 22.27 0.22 -3.53 16 19 C -0.14 -3.77 10.05 22.27 0.22 -3.55 16 20 C -0.12 -3.71 10.05 22.27 0.22 -3.48 16 21 C -0.15 -5.57 9.67 22.27 0.22 -5.35 16 22 C -0.14 -4.81 5.74 -10.77 -0.06 -4.87 16 23 C -0.19 -7.58 10.22 30.59 0.31 -7.26 16 24 C -0.14 -4.78 9.84 30.62 0.30 -4.48 16 25 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.05 1.45 6.62 -2.39 -0.02 1.44 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 28 H 0.08 2.04 8.03 -2.39 -0.02 2.02 16 29 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.33 11.28 7.28 -89.70 -0.65 10.63 16 31 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 32 H 0.11 4.39 7.86 -2.91 -0.02 4.36 16 33 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 34 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 36 H 0.10 3.90 8.01 -2.91 -0.02 3.88 16 37 H 0.11 3.24 8.07 -2.39 -0.02 3.22 16 38 H 0.06 3.18 7.90 -2.39 -0.02 3.17 16 39 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 40 H 0.10 3.55 6.91 -2.39 -0.02 3.53 16 41 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -64.59 325.29 3.81 -60.78 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: 0.28 Total: 35.53 kcal Atomic # 6 Polarization: -59.83 SS G_CDS: 3.19 Total: -56.64 kcal Atomic # 7 Polarization: -84.38 SS G_CDS: -1.42 Total: -85.80 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.76 Total: 46.13 kcal Total: -64.59 3.81 -60.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323732474.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.856 kcal (2) G-P(sol) polarization free energy of solvation -64.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds