Wall clock time and date at job start Mon Mar 30 2020 07:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46987 * 2 1 4 4 H 1.09004 * 109.47099 * 304.81562 * 3 2 1 5 5 N 1.46902 * 109.47113 * 64.82235 * 3 2 1 6 6 C 1.46901 * 110.99688 * 265.44434 * 5 3 2 7 7 H 1.09002 * 109.46977 * 35.65374 * 6 5 3 8 8 C 1.50695 * 109.47304 * 275.65327 * 6 5 3 9 9 H 1.07999 * 119.99976 * 333.84029 * 8 6 5 10 10 C 1.37883 * 120.00207 * 153.84850 * 8 6 5 11 11 N 1.31512 * 119.99898 * 4.90532 * 10 8 6 12 12 Si 1.86801 * 120.00181 * 184.90548 * 10 8 6 13 13 H 1.48502 * 109.47050 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47180 * 119.99721 * 12 10 8 15 15 H 1.48494 * 109.47047 * 240.00118 * 12 10 8 16 16 C 1.50697 * 109.47161 * 155.64817 * 6 5 3 17 17 C 1.38236 * 119.99597 * 45.66725 * 16 6 5 18 18 C 1.38240 * 119.99884 * 179.78848 * 17 16 6 19 19 C 1.38235 * 120.00013 * 0.44095 * 18 17 16 20 20 C 1.38240 * 119.99870 * 359.81129 * 19 18 17 21 21 C 1.38234 * 120.00071 * 359.97438 * 20 19 18 22 22 C 1.53000 * 109.47040 * 184.81932 * 3 2 1 23 23 C 1.52998 * 117.49989 * 253.31534 * 22 3 2 24 24 C 1.52998 * 60.00128 * 252.51072 * 23 22 3 25 25 H 1.08993 * 109.46898 * 53.17938 * 1 2 3 26 26 H 1.09005 * 109.47205 * 293.18066 * 1 2 3 27 27 H 1.08998 * 109.47052 * 173.18116 * 1 2 3 28 28 H 1.09006 * 109.47274 * 119.99897 * 2 1 3 29 29 H 1.09000 * 109.47331 * 240.00326 * 2 1 3 30 30 H 1.00899 * 110.99967 * 141.49472 * 5 3 2 31 31 H 0.97000 * 120.00389 * 180.02562 * 11 10 8 32 32 H 1.08004 * 120.00429 * 0.02562 * 17 16 6 33 33 H 1.07997 * 120.00018 * 180.27321 * 18 17 16 34 34 H 1.07991 * 120.00381 * 179.83709 * 19 18 17 35 35 H 1.07993 * 119.99901 * 179.97438 * 20 19 18 36 36 H 1.08000 * 120.00160 * 179.97438 * 21 20 19 37 37 H 1.08999 * 115.55044 * 39.02384 * 22 3 2 38 38 H 1.09005 * 117.50103 * 359.97438 * 23 22 3 39 39 H 1.09003 * 117.50208 * 145.01946 * 23 22 3 40 40 H 1.09000 * 117.49827 * 252.51497 * 24 23 22 41 41 H 1.08995 * 117.50508 * 107.48827 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6079 1.9807 -0.8437 5 7 1.6477 2.1006 1.2534 6 6 0.3894 2.8404 1.0881 7 1 -0.2655 2.2960 0.4078 8 6 0.6803 4.2057 0.5202 9 1 1.6429 4.6660 0.6870 10 6 -0.2826 4.8672 -0.2122 11 7 -1.4861 4.3511 -0.3342 12 14 0.1222 6.4965 -1.0313 13 1 1.5335 6.8580 -0.7435 14 1 -0.0684 6.3737 -2.4988 15 1 -0.7767 7.5534 -0.5020 16 6 -0.2869 2.9868 2.4268 17 6 0.4466 3.3728 3.5331 18 6 -0.1746 3.5113 4.7602 19 6 -1.5275 3.2551 4.8830 20 6 -2.2599 2.8641 3.7777 21 6 -1.6396 2.7298 2.5496 22 6 3.5652 1.4442 -0.1212 23 6 4.3728 1.7981 1.1291 24 6 4.2797 2.7940 -0.0286 25 1 -0.3633 0.6159 -0.8226 26 1 -0.3634 0.4045 0.9447 27 1 -0.3633 -1.0204 -0.1220 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.3817 2.7061 1.5891 31 1 -2.1634 4.8162 -0.8497 32 1 1.5042 3.5698 3.4380 33 1 0.3975 3.8171 5.6236 34 1 -2.0123 3.3608 5.8421 35 1 -3.3167 2.6635 3.8736 36 1 -2.2118 2.4240 1.6862 37 1 3.9839 0.6984 -0.7968 38 1 3.8176 2.0301 2.0380 39 1 5.3231 1.2849 1.2765 40 1 5.1687 2.9359 -0.6431 41 1 3.6632 3.6807 0.1185 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323732477.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:24 Heat of formation + Delta-G solvation = 42.095718 kcal Electronic energy + Delta-G solvation = -20084.517100 eV Core-core repulsion = 17350.550931 eV Total energy + Delta-G solvation = -2733.966169 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.76079 -37.76806 -34.68403 -32.97421 -31.43736 -29.90218 -29.43670 -26.70593 -25.18487 -22.69704 -22.03114 -21.53869 -21.05473 -19.79586 -18.86635 -16.95922 -16.15182 -15.27924 -14.96786 -14.57852 -14.18060 -13.90221 -13.62274 -13.06169 -12.82683 -12.45539 -12.25610 -12.14570 -11.68861 -11.60178 -11.41731 -11.11070 -11.06985 -10.99796 -10.61747 -10.57307 -10.24115 -10.19699 -10.03860 -9.85939 -9.66384 -9.39148 -9.31161 -8.55450 -7.90385 -7.62246 -7.23913 -6.10907 -4.22311 2.43464 2.49638 3.21604 3.30656 3.33037 4.24064 4.32640 4.86910 5.11280 5.19692 5.27384 5.36566 5.48830 5.69396 5.76446 5.86043 5.88172 5.92333 5.96858 6.02884 6.14437 6.38920 6.43399 6.47719 6.52159 6.54637 6.58093 6.60872 6.67428 6.82242 6.94525 6.97078 7.06806 7.14116 7.29527 7.44144 7.56630 7.73006 7.84066 8.06815 8.12677 8.21860 8.61776 8.90399 9.44881 10.90234 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.012271 B = 0.009968 C = 0.007335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.342273 B = 2808.317145 C = 3816.373697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 C 0.121 3.879 4 H 0.060 0.940 5 N -0.684 5.684 6 C 0.225 3.775 7 H 0.077 0.923 8 C -0.538 4.538 9 H 0.056 0.944 10 C 0.074 3.926 11 N -0.876 5.876 12 Si 0.887 3.113 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.284 1.284 16 C -0.004 4.004 17 C -0.114 4.114 18 C -0.135 4.135 19 C -0.157 4.157 20 C -0.132 4.132 21 C -0.105 4.105 22 C -0.151 4.151 23 C -0.181 4.181 24 C -0.188 4.188 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.328 0.672 31 H 0.263 0.737 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.959 -5.275 2.766 7.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.140 4.140 3 C 0.011 3.989 4 H 0.078 0.922 5 N -0.316 5.316 6 C 0.117 3.883 7 H 0.095 0.905 8 C -0.577 4.577 9 H 0.074 0.926 10 C -0.131 4.131 11 N -0.513 5.513 12 Si 0.714 3.286 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.210 1.210 16 C -0.005 4.005 17 C -0.132 4.132 18 C -0.153 4.153 19 C -0.175 4.175 20 C -0.150 4.150 21 C -0.124 4.124 22 C -0.169 4.169 23 C -0.218 4.218 24 C -0.225 4.225 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.148 0.852 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.115 0.885 38 H 0.124 0.876 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.474 -5.805 2.927 7.892 hybrid contribution 0.366 1.987 -0.977 2.244 sum 4.840 -3.818 1.950 6.465 Atomic orbital electron populations 1.21808 0.95952 0.99716 1.03046 1.21441 0.96044 0.96277 1.00193 1.20891 0.89918 0.94662 0.93445 0.92236 1.61098 1.06887 1.36154 1.27480 1.18581 0.87471 0.92624 0.89586 0.90536 1.21686 0.99778 1.03322 1.32924 0.92595 1.24938 0.94898 0.97471 0.95767 1.69915 1.02677 1.38862 1.39806 0.86621 0.78610 0.84066 0.79269 1.19766 1.20914 1.20997 1.20414 0.93243 0.91242 0.95651 1.20787 0.99215 1.00772 0.92432 1.20910 0.94798 1.02313 0.97284 1.20749 0.94585 1.04388 0.97775 1.20964 0.98651 1.01762 0.93616 1.21022 0.95056 1.00058 0.96244 1.22578 0.95154 0.98437 1.00769 1.22982 1.01108 1.03742 0.94004 1.23023 1.02526 0.94650 1.02319 0.92875 0.91372 0.94475 0.92229 0.93484 0.85163 0.92747 0.87644 0.87947 0.88043 0.87852 0.86425 0.88467 0.87603 0.89793 0.89688 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.45 37.16 0.31 -2.28 16 2 C -0.10 -1.67 5.61 -26.73 -0.15 -1.82 16 3 C 0.12 2.20 2.46 -67.71 -0.17 2.03 16 4 H 0.06 1.26 7.53 -51.93 -0.39 0.87 16 5 N -0.68 -13.44 5.12 -102.18 -0.52 -13.97 16 6 C 0.23 5.15 1.09 -70.02 -0.08 5.08 16 7 H 0.08 1.90 4.69 -51.93 -0.24 1.66 16 8 C -0.54 -13.63 8.03 -34.44 -0.28 -13.91 16 9 H 0.06 1.43 7.40 -52.49 -0.39 1.04 16 10 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 11 N -0.88 -23.61 12.99 55.43 0.72 -22.89 16 12 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 13 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 C 0.00 -0.10 4.93 -104.62 -0.52 -0.61 16 17 C -0.11 -2.38 9.27 -39.58 -0.37 -2.74 16 18 C -0.13 -2.55 10.05 -39.58 -0.40 -2.95 16 19 C -0.16 -2.90 10.05 -39.58 -0.40 -3.29 16 20 C -0.13 -2.59 10.05 -39.58 -0.40 -2.99 16 21 C -0.11 -2.33 9.67 -39.58 -0.38 -2.72 16 22 C -0.15 -2.35 5.69 -90.62 -0.52 -2.86 16 23 C -0.18 -2.61 9.66 -26.73 -0.26 -2.87 16 24 C -0.19 -2.89 9.82 -26.73 -0.26 -3.16 16 25 H 0.05 1.00 7.70 -51.93 -0.40 0.60 16 26 H 0.07 1.33 6.75 -51.93 -0.35 0.98 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.33 6.37 4.19 -39.29 -0.16 6.20 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.11 2.11 7.43 -52.48 -0.39 1.72 16 33 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.12 2.71 8.00 -52.49 -0.42 2.29 16 37 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.11 1.63 6.17 -51.93 -0.32 1.31 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.10 1.80 7.47 -51.93 -0.39 1.41 16 LS Contribution 327.92 15.07 4.94 4.94 Total: -1.00 -26.13 327.92 -10.23 -36.35 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -6.40 Total: 13.15 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: -3.95 Total: -33.25 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.20 Total: -36.86 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.13 -10.23 -36.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323732477.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.450 kcal (2) G-P(sol) polarization free energy of solvation -26.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds