Wall clock time and date at job start Mon Mar 30 2020 07:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46987 * 2 1 4 4 H 1.09004 * 109.47099 * 304.81562 * 3 2 1 5 5 N 1.46902 * 109.47113 * 64.82235 * 3 2 1 6 6 C 1.46901 * 110.99688 * 265.44434 * 5 3 2 7 7 H 1.09002 * 109.46977 * 35.65374 * 6 5 3 8 8 C 1.50695 * 109.47304 * 275.65327 * 6 5 3 9 9 H 1.07999 * 119.99976 * 333.84029 * 8 6 5 10 10 C 1.37883 * 120.00207 * 153.84850 * 8 6 5 11 11 N 1.31512 * 119.99898 * 4.90532 * 10 8 6 12 12 Si 1.86801 * 120.00181 * 184.90548 * 10 8 6 13 13 H 1.48502 * 109.47050 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47180 * 119.99721 * 12 10 8 15 15 H 1.48494 * 109.47047 * 240.00118 * 12 10 8 16 16 C 1.50697 * 109.47161 * 155.64817 * 6 5 3 17 17 C 1.38236 * 119.99597 * 45.66725 * 16 6 5 18 18 C 1.38240 * 119.99884 * 179.78848 * 17 16 6 19 19 C 1.38235 * 120.00013 * 0.44095 * 18 17 16 20 20 C 1.38240 * 119.99870 * 359.81129 * 19 18 17 21 21 C 1.38234 * 120.00071 * 359.97438 * 20 19 18 22 22 C 1.53000 * 109.47040 * 184.81932 * 3 2 1 23 23 C 1.52998 * 117.49989 * 253.31534 * 22 3 2 24 24 C 1.52998 * 60.00128 * 252.51072 * 23 22 3 25 25 H 1.08993 * 109.46898 * 53.17938 * 1 2 3 26 26 H 1.09005 * 109.47205 * 293.18066 * 1 2 3 27 27 H 1.08998 * 109.47052 * 173.18116 * 1 2 3 28 28 H 1.09006 * 109.47274 * 119.99897 * 2 1 3 29 29 H 1.09000 * 109.47331 * 240.00326 * 2 1 3 30 30 H 1.00899 * 110.99967 * 141.49472 * 5 3 2 31 31 H 0.97000 * 120.00389 * 180.02562 * 11 10 8 32 32 H 1.08004 * 120.00429 * 0.02562 * 17 16 6 33 33 H 1.07997 * 120.00018 * 180.27321 * 18 17 16 34 34 H 1.07991 * 120.00381 * 179.83709 * 19 18 17 35 35 H 1.07993 * 119.99901 * 179.97438 * 20 19 18 36 36 H 1.08000 * 120.00160 * 179.97438 * 21 20 19 37 37 H 1.08999 * 115.55044 * 39.02384 * 22 3 2 38 38 H 1.09005 * 117.50103 * 359.97438 * 23 22 3 39 39 H 1.09003 * 117.50208 * 145.01946 * 23 22 3 40 40 H 1.09000 * 117.49827 * 252.51497 * 24 23 22 41 41 H 1.08995 * 117.50508 * 107.48827 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6079 1.9807 -0.8437 5 7 1.6477 2.1006 1.2534 6 6 0.3894 2.8404 1.0881 7 1 -0.2655 2.2960 0.4078 8 6 0.6803 4.2057 0.5202 9 1 1.6429 4.6660 0.6870 10 6 -0.2826 4.8672 -0.2122 11 7 -1.4861 4.3511 -0.3342 12 14 0.1222 6.4965 -1.0313 13 1 1.5335 6.8580 -0.7435 14 1 -0.0684 6.3737 -2.4988 15 1 -0.7767 7.5534 -0.5020 16 6 -0.2869 2.9868 2.4268 17 6 0.4466 3.3728 3.5331 18 6 -0.1746 3.5113 4.7602 19 6 -1.5275 3.2551 4.8830 20 6 -2.2599 2.8641 3.7777 21 6 -1.6396 2.7298 2.5496 22 6 3.5652 1.4442 -0.1212 23 6 4.3728 1.7981 1.1291 24 6 4.2797 2.7940 -0.0286 25 1 -0.3633 0.6159 -0.8226 26 1 -0.3634 0.4045 0.9447 27 1 -0.3633 -1.0204 -0.1220 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.3817 2.7061 1.5891 31 1 -2.1634 4.8162 -0.8497 32 1 1.5042 3.5698 3.4380 33 1 0.3975 3.8171 5.6236 34 1 -2.0123 3.3608 5.8421 35 1 -3.3167 2.6635 3.8736 36 1 -2.2118 2.4240 1.6862 37 1 3.9839 0.6984 -0.7968 38 1 3.8176 2.0301 2.0380 39 1 5.3231 1.2849 1.2765 40 1 5.1687 2.9359 -0.6431 41 1 3.6632 3.6807 0.1185 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323732477.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:23 Heat of formation + Delta-G solvation = 30.284449 kcal Electronic energy + Delta-G solvation = -20085.029275 eV Core-core repulsion = 17350.550931 eV Total energy + Delta-G solvation = -2734.478344 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.28694 -39.22321 -36.22564 -34.64013 -33.18203 -31.48549 -30.98441 -28.38572 -26.88899 -24.39073 -23.28361 -23.08579 -22.40339 -21.44850 -20.29068 -18.81645 -17.68100 -16.90223 -16.54302 -16.26822 -15.66543 -15.39225 -15.12771 -14.76768 -14.33462 -14.00913 -13.79573 -13.70419 -13.31687 -13.27124 -13.03284 -12.84480 -12.81909 -12.34086 -12.19960 -12.09018 -11.83741 -11.67952 -11.59218 -11.41850 -11.12471 -10.95118 -10.77154 -10.51500 -9.49403 -9.23518 -8.95278 -8.07131 -6.26360 0.83165 0.91399 1.32659 1.36459 1.44582 2.37250 3.00421 3.12927 3.31511 3.77929 3.84607 4.10753 4.22201 4.31160 4.36124 4.39094 4.47439 4.51018 4.53605 4.76344 4.81330 4.87640 4.96850 5.02311 5.09712 5.14490 5.15522 5.20766 5.28599 5.34399 5.42573 5.47336 5.53992 5.55692 5.61949 5.71046 5.86860 5.97595 6.09337 6.29904 6.40946 6.53604 6.94249 7.01205 7.42913 8.89278 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.012271 B = 0.009968 C = 0.007335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.342273 B = 2808.317145 C = 3816.373697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C 0.119 3.881 4 H 0.019 0.981 5 N -0.674 5.674 6 C 0.235 3.765 7 H 0.049 0.951 8 C -0.541 4.541 9 H 0.048 0.952 10 C 0.028 3.972 11 N -0.902 5.902 12 Si 0.939 3.061 13 H -0.269 1.269 14 H -0.281 1.281 15 H -0.286 1.286 16 C -0.029 4.029 17 C -0.128 4.128 18 C -0.131 4.131 19 C -0.151 4.151 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.157 4.157 23 C -0.164 4.164 24 C -0.193 4.193 25 H 0.027 0.973 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.329 0.671 31 H 0.260 0.740 32 H 0.108 0.892 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.348 -5.748 4.310 9.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.133 4.133 3 C 0.009 3.991 4 H 0.037 0.963 5 N -0.306 5.306 6 C 0.126 3.874 7 H 0.067 0.933 8 C -0.580 4.580 9 H 0.066 0.934 10 C -0.173 4.173 11 N -0.540 5.540 12 Si 0.765 3.235 13 H -0.194 1.194 14 H -0.207 1.207 15 H -0.212 1.212 16 C -0.030 4.030 17 C -0.147 4.147 18 C -0.149 4.149 19 C -0.169 4.169 20 C -0.153 4.153 21 C -0.149 4.149 22 C -0.175 4.175 23 C -0.201 4.201 24 C -0.230 4.230 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.149 0.851 31 H 0.070 0.930 32 H 0.126 0.874 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.145 0.855 36 H 0.111 0.889 37 H 0.139 0.861 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.877 -6.283 4.473 9.696 hybrid contribution -0.080 2.100 -1.402 2.526 sum 5.797 -4.183 3.072 7.780 Atomic orbital electron populations 1.21710 0.97089 1.00405 1.00589 1.21408 0.94892 0.95271 1.01683 1.20902 0.92077 0.94988 0.91156 0.96285 1.61118 1.05867 1.35384 1.28225 1.18300 0.88261 0.91241 0.89563 0.93263 1.21933 0.99155 1.04269 1.32667 0.93389 1.25564 0.94978 1.00142 0.96660 1.70033 1.03280 1.39910 1.40746 0.85804 0.78317 0.80934 0.78400 1.19367 1.20737 1.21203 1.20428 0.93687 0.92870 0.96026 1.20922 0.99463 1.01321 0.92969 1.21313 0.95402 1.00797 0.97398 1.21190 0.94442 1.02402 0.98825 1.21261 1.00028 1.01039 0.92947 1.20988 0.95123 1.01888 0.96860 1.22569 0.93187 0.99300 1.02493 1.23010 1.01715 1.02605 0.92767 1.22987 1.02876 0.93466 1.03720 0.95357 0.93929 0.91969 0.91367 0.91060 0.85111 0.93049 0.87379 0.84482 0.84158 0.85513 0.88855 0.86099 0.88801 0.86854 0.87427 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 8.45 71.98 0.61 -4.48 16 2 C -0.09 -3.07 5.61 30.59 0.17 -2.90 16 3 C 0.12 4.40 2.46 44.92 0.11 4.51 16 4 H 0.02 0.86 7.53 -2.39 -0.02 0.84 16 5 N -0.67 -27.26 5.12 -477.18 -2.45 -29.70 16 6 C 0.23 11.28 1.09 43.42 0.05 11.32 16 7 H 0.05 2.63 4.69 -2.39 -0.01 2.62 16 8 C -0.54 -28.53 8.03 25.60 0.21 -28.32 16 9 H 0.05 2.54 7.40 -2.91 -0.02 2.52 16 10 C 0.03 1.52 5.45 84.66 0.46 1.98 16 11 N -0.90 -50.85 12.99 21.45 0.28 -50.57 16 12 Si 0.94 43.59 29.54 68.60 2.03 45.61 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 15 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 16 C -0.03 -1.34 4.93 -19.87 -0.10 -1.44 16 17 C -0.13 -5.32 9.27 22.27 0.21 -5.11 16 18 C -0.13 -4.63 10.05 22.27 0.22 -4.41 16 19 C -0.15 -5.12 10.05 22.27 0.22 -4.90 16 20 C -0.13 -5.16 10.05 22.27 0.22 -4.94 16 21 C -0.13 -5.94 9.67 22.27 0.22 -5.73 16 22 C -0.16 -4.69 5.69 -10.79 -0.06 -4.75 16 23 C -0.16 -4.39 9.66 30.59 0.30 -4.09 16 24 C -0.19 -5.76 9.82 30.59 0.30 -5.46 16 25 H 0.03 1.13 7.70 -2.39 -0.02 1.11 16 26 H 0.04 1.74 6.75 -2.38 -0.02 1.72 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.33 13.04 4.19 -89.69 -0.38 12.66 16 31 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 32 H 0.11 4.30 7.43 -2.91 -0.02 4.28 16 33 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 34 H 0.14 3.70 8.06 -2.92 -0.02 3.67 16 35 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 36 H 0.09 4.62 8.00 -2.91 -0.02 4.59 16 37 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.09 2.77 6.17 -2.38 -0.01 2.76 16 39 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.11 2.69 8.14 -2.39 -0.02 2.68 16 41 H 0.07 2.55 7.47 -2.39 -0.02 2.53 16 Total: -1.00 -58.57 327.92 3.62 -54.95 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: 0.63 Total: 38.41 kcal Atomic # 6 Polarization: -61.84 SS G_CDS: 3.13 Total: -58.70 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -2.17 Total: -80.27 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -58.57 3.62 -54.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323732477.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.233 kcal (2) G-P(sol) polarization free energy of solvation -58.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds