Wall clock time and date at job start Mon Mar 30 2020 06:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38239 * 120.00009 * 2 1 4 4 C 1.38234 * 120.00044 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00027 * 179.97438 * 4 3 2 6 6 C 1.38238 * 119.99877 * 0.02562 * 4 3 2 7 7 C 1.38233 * 120.00014 * 359.95955 * 6 4 3 8 8 C 1.50700 * 119.99946 * 180.02562 * 7 6 4 9 9 H 1.08996 * 110.90450 * 357.58589 * 8 7 6 10 10 C 1.55142 * 110.99048 * 121.45671 * 8 7 6 11 11 C 1.54312 * 103.17714 * 153.83199 * 10 8 7 12 12 N 1.47443 * 107.23612 * 337.62814 * 11 10 8 13 13 C 1.46900 * 111.00227 * 236.74273 * 12 11 10 14 14 C 1.50699 * 109.47247 * 290.12346 * 13 12 11 15 15 H 1.08001 * 119.99749 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00208 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99997 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00267 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47263 * 59.99643 * 18 16 14 20 20 H 1.48501 * 109.47727 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47151 * 300.00300 * 18 16 14 22 22 C 1.47844 * 108.56494 * 359.01050 * 12 11 10 23 23 C 1.38227 * 119.99970 * 180.20730 * 2 1 3 24 24 H 1.08998 * 109.47254 * 89.99894 * 1 2 3 25 25 H 1.08996 * 109.47252 * 210.00363 * 1 2 3 26 26 H 1.09006 * 109.46903 * 329.99874 * 1 2 3 27 27 H 1.07999 * 119.99794 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47048 * 270.02328 * 5 4 3 29 29 H 1.08998 * 109.46882 * 30.02049 * 5 4 3 30 30 H 1.09005 * 109.46947 * 150.01663 * 5 4 3 31 31 H 1.07994 * 119.99586 * 179.97438 * 6 4 3 32 32 H 1.09002 * 110.70816 * 35.36047 * 10 8 7 33 33 H 1.09005 * 110.70106 * 272.30188 * 10 8 7 34 34 H 1.08997 * 109.89327 * 97.03090 * 11 10 8 35 35 H 1.09003 * 109.89220 * 218.21893 * 11 10 8 36 36 H 1.08998 * 109.46669 * 50.12444 * 13 12 11 37 37 H 1.08999 * 109.47032 * 170.11876 * 13 12 11 38 38 H 0.96999 * 119.99807 * 179.97438 * 17 16 14 39 39 H 1.08999 * 110.37744 * 142.93014 * 22 12 11 40 40 H 1.09007 * 110.37325 * 265.15824 * 22 12 11 41 41 H 1.08001 * 120.00579 * 0.04358 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5023 0.0000 6 6 4.2717 0.0000 0.0005 7 6 3.5805 -1.1971 0.0008 8 6 4.3340 -2.5022 0.0014 9 1 5.4095 -2.3304 -0.0413 10 6 3.9571 -3.3610 1.2373 11 6 4.2300 -4.8029 0.7601 12 7 4.1822 -4.7919 -0.7135 13 6 3.1879 -5.7498 -1.2152 14 6 3.6728 -7.1545 -0.9649 15 1 4.6246 -7.3192 -0.4819 16 6 2.9013 -8.2294 -1.3526 17 7 1.7420 -8.0289 -1.9404 18 14 3.5026 -9.9707 -1.0431 19 1 3.6967 -10.1756 0.4149 20 1 2.4969 -10.9391 -1.5490 21 1 4.7923 -10.1817 -1.7484 22 6 3.8696 -3.4189 -1.1640 23 6 2.1981 -1.1971 -0.0043 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1325 -0.0004 28 1 4.5157 2.8164 -1.0278 29 1 3.7449 3.2622 0.5134 30 1 5.2864 2.3722 0.5140 31 1 5.3516 0.0001 0.0005 32 1 2.9047 -3.2314 1.4902 33 1 4.5903 -3.1103 2.0884 34 1 5.2156 -5.1246 1.0967 35 1 3.4651 -5.4739 1.1510 36 1 2.2410 -5.5947 -0.6981 37 1 3.0463 -5.5994 -2.2854 38 1 1.1994 -8.7851 -2.2134 39 1 4.4210 -3.1834 -2.0743 40 1 2.7981 -3.3091 -1.3312 41 1 1.6582 -2.1324 -0.0084 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335324507.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:12 Heat of formation + Delta-G solvation = 7.242770 kcal Electronic energy + Delta-G solvation = -18958.073601 eV Core-core repulsion = 16222.596094 eV Total energy + Delta-G solvation = -2735.477506 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.86456 -37.88974 -33.69411 -33.51390 -32.31512 -30.01084 -28.17499 -27.27460 -26.68939 -26.12181 -22.73316 -22.06411 -20.75029 -19.77882 -19.32154 -16.44042 -16.13743 -15.90753 -15.10111 -14.78258 -14.33285 -14.08271 -13.75482 -13.28800 -12.99340 -12.88829 -12.75679 -12.66078 -12.58939 -12.19362 -11.96060 -11.89698 -11.68691 -11.20999 -11.11965 -10.91836 -10.73118 -10.65165 -10.48916 -10.39154 -10.02938 -9.77454 -9.17603 -8.49356 -8.46799 -8.38748 -7.19166 -6.00140 -4.01486 1.42666 1.43053 3.35366 3.38998 3.42429 3.75119 4.44481 4.68225 4.75314 4.81022 5.11294 5.17380 5.21994 5.24713 5.30201 5.34704 5.41699 5.46690 5.57459 5.58615 5.60713 5.69268 5.73384 5.81350 5.90427 6.00398 6.15381 6.21686 6.25087 6.38147 6.46032 6.60037 6.64398 6.67177 6.73189 6.85496 7.10378 7.23335 7.35476 7.84709 8.09366 8.24021 8.56711 9.06663 9.62825 11.10693 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034508 B = 0.004098 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.215127 B = 6830.262585 C = 7306.150473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.081 4.081 3 C -0.131 4.131 4 C -0.086 4.086 5 C -0.112 4.112 6 C -0.125 4.125 7 C -0.052 4.052 8 C -0.062 4.062 9 H 0.086 0.914 10 C -0.132 4.132 11 C 0.054 3.946 12 N -0.529 5.529 13 C 0.189 3.811 14 C -0.506 4.506 15 H 0.062 0.938 16 C 0.054 3.946 17 N -0.900 5.900 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.053 3.947 23 C -0.118 4.118 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.116 0.884 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.061 0.939 36 H -0.008 1.008 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.069 0.931 40 H 0.041 0.959 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.278 19.087 5.235 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.081 4.081 3 C -0.149 4.149 4 C -0.086 4.086 5 C -0.168 4.168 6 C -0.143 4.143 7 C -0.053 4.053 8 C -0.081 4.081 9 H 0.105 0.895 10 C -0.171 4.171 11 C -0.075 4.075 12 N -0.253 5.253 13 C 0.064 3.936 14 C -0.545 4.545 15 H 0.080 0.920 16 C -0.147 4.147 17 N -0.540 5.540 18 Si 0.726 3.274 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.075 4.075 23 C -0.136 4.136 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.134 0.866 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.010 0.990 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.594 18.806 4.947 19.511 hybrid contribution -0.604 -0.807 0.357 1.069 sum 0.991 17.999 5.304 18.791 Atomic orbital electron populations 1.20789 0.91359 1.02596 1.02355 1.19871 0.95930 0.93044 0.99302 1.20808 0.93468 0.97267 1.03403 1.19833 0.93795 0.95109 0.99869 1.20759 0.99777 0.94156 1.02132 1.20901 0.99513 0.91376 1.02478 1.19791 0.93567 0.94467 0.97451 1.21418 0.99190 0.90956 0.96583 0.89535 1.22922 1.01129 0.96135 0.96868 1.22666 1.01308 0.94123 0.89379 1.63660 1.50418 1.03765 1.07491 1.19892 0.88028 0.90326 0.95404 1.21133 1.04747 0.90083 1.38513 0.91962 1.24995 0.94924 0.99378 0.95372 1.69954 1.11772 1.31213 1.41051 0.86555 0.78430 0.83856 0.78529 1.20290 1.21387 1.20155 1.23141 0.98685 0.89032 0.96654 1.20949 0.93811 0.97626 1.01240 0.91171 0.91444 0.91812 0.86578 0.91350 0.91832 0.91674 0.86288 0.91779 0.91569 0.91859 0.92100 0.99029 0.95412 0.92909 0.91306 0.94083 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16 2 C -0.08 -1.03 5.88 -104.63 -0.62 -1.64 16 3 C -0.13 -1.53 9.36 -39.58 -0.37 -1.90 16 4 C -0.09 -1.00 5.88 -104.62 -0.62 -1.61 16 5 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 6 C -0.12 -1.59 9.34 -39.58 -0.37 -1.96 16 7 C -0.05 -0.75 5.01 -104.62 -0.52 -1.27 16 8 C -0.06 -0.97 3.27 -89.38 -0.29 -1.26 16 9 H 0.09 1.27 7.96 -51.93 -0.41 0.86 16 10 C -0.13 -2.10 6.34 -24.91 -0.16 -2.26 16 11 C 0.05 1.05 6.39 -2.84 -0.02 1.03 16 12 N -0.53 -11.77 5.15 -232.38 -1.20 -12.97 16 13 C 0.19 5.04 4.30 -4.98 -0.02 5.02 16 14 C -0.51 -14.51 8.66 -34.44 -0.30 -14.81 16 15 H 0.06 1.77 7.78 -52.49 -0.41 1.36 16 16 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 18 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.05 1.00 6.11 -2.04 -0.01 0.98 16 23 C -0.12 -1.70 7.96 -39.58 -0.32 -2.01 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 26 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 27 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.46 8.09 -51.93 -0.42 0.05 16 30 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 31 H 0.12 1.33 7.99 -52.49 -0.42 0.91 16 32 H 0.06 1.02 7.11 -51.93 -0.37 0.65 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.31 7.31 -51.93 -0.38 0.93 16 36 H -0.01 -0.23 7.96 -51.93 -0.41 -0.64 16 37 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.04 0.80 6.42 -51.93 -0.33 0.46 16 41 H 0.12 1.85 7.02 -52.49 -0.37 1.48 16 LS Contribution 330.33 15.07 4.98 4.98 Total: -1.00 -30.53 330.33 -10.36 -40.90 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -6.88 Total: -1.85 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -2.99 Total: -21.62 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: -0.46 Total: -39.31 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.53 -10.36 -40.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335324507.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.141 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds