Wall clock time and date at job start Mon Mar 30 2020 06:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38239 * 120.00009 * 2 1 4 4 C 1.38234 * 120.00044 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00027 * 179.97438 * 4 3 2 6 6 C 1.38238 * 119.99877 * 0.02562 * 4 3 2 7 7 C 1.38233 * 120.00014 * 359.95955 * 6 4 3 8 8 C 1.50700 * 119.99946 * 180.02562 * 7 6 4 9 9 H 1.08996 * 110.90450 * 357.58589 * 8 7 6 10 10 C 1.55142 * 110.99048 * 121.45671 * 8 7 6 11 11 C 1.54312 * 103.17714 * 153.83199 * 10 8 7 12 12 N 1.47443 * 107.23612 * 337.62814 * 11 10 8 13 13 C 1.46900 * 111.00227 * 236.74273 * 12 11 10 14 14 C 1.50699 * 109.47247 * 290.12346 * 13 12 11 15 15 H 1.08001 * 119.99749 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00208 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99997 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00267 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47263 * 59.99643 * 18 16 14 20 20 H 1.48501 * 109.47727 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47151 * 300.00300 * 18 16 14 22 22 C 1.47844 * 108.56494 * 359.01050 * 12 11 10 23 23 C 1.38227 * 119.99970 * 180.20730 * 2 1 3 24 24 H 1.08998 * 109.47254 * 89.99894 * 1 2 3 25 25 H 1.08996 * 109.47252 * 210.00363 * 1 2 3 26 26 H 1.09006 * 109.46903 * 329.99874 * 1 2 3 27 27 H 1.07999 * 119.99794 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47048 * 270.02328 * 5 4 3 29 29 H 1.08998 * 109.46882 * 30.02049 * 5 4 3 30 30 H 1.09005 * 109.46947 * 150.01663 * 5 4 3 31 31 H 1.07994 * 119.99586 * 179.97438 * 6 4 3 32 32 H 1.09002 * 110.70816 * 35.36047 * 10 8 7 33 33 H 1.09005 * 110.70106 * 272.30188 * 10 8 7 34 34 H 1.08997 * 109.89327 * 97.03090 * 11 10 8 35 35 H 1.09003 * 109.89220 * 218.21893 * 11 10 8 36 36 H 1.08998 * 109.46669 * 50.12444 * 13 12 11 37 37 H 1.08999 * 109.47032 * 170.11876 * 13 12 11 38 38 H 0.96999 * 119.99807 * 179.97438 * 17 16 14 39 39 H 1.08999 * 110.37744 * 142.93014 * 22 12 11 40 40 H 1.09007 * 110.37325 * 265.15824 * 22 12 11 41 41 H 1.08001 * 120.00579 * 0.04358 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5023 0.0000 6 6 4.2717 0.0000 0.0005 7 6 3.5805 -1.1971 0.0008 8 6 4.3340 -2.5022 0.0014 9 1 5.4095 -2.3304 -0.0413 10 6 3.9571 -3.3610 1.2373 11 6 4.2300 -4.8029 0.7601 12 7 4.1822 -4.7919 -0.7135 13 6 3.1879 -5.7498 -1.2152 14 6 3.6728 -7.1545 -0.9649 15 1 4.6246 -7.3192 -0.4819 16 6 2.9013 -8.2294 -1.3526 17 7 1.7420 -8.0289 -1.9404 18 14 3.5026 -9.9707 -1.0431 19 1 3.6967 -10.1756 0.4149 20 1 2.4969 -10.9391 -1.5490 21 1 4.7923 -10.1817 -1.7484 22 6 3.8696 -3.4189 -1.1640 23 6 2.1981 -1.1971 -0.0043 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1325 -0.0004 28 1 4.5157 2.8164 -1.0278 29 1 3.7449 3.2622 0.5134 30 1 5.2864 2.3722 0.5140 31 1 5.3516 0.0001 0.0005 32 1 2.9047 -3.2314 1.4902 33 1 4.5903 -3.1103 2.0884 34 1 5.2156 -5.1246 1.0967 35 1 3.4651 -5.4739 1.1510 36 1 2.2410 -5.5947 -0.6981 37 1 3.0463 -5.5994 -2.2854 38 1 1.1994 -8.7851 -2.2134 39 1 4.4210 -3.1834 -2.0743 40 1 2.7981 -3.3091 -1.3312 41 1 1.6582 -2.1324 -0.0084 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335324507.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:11 Heat of formation + Delta-G solvation = -9.601321 kcal Electronic energy + Delta-G solvation = -18958.804015 eV Core-core repulsion = 16222.596094 eV Total energy + Delta-G solvation = -2736.207921 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.97568 -39.32030 -35.44974 -34.37532 -34.03038 -31.53409 -29.62665 -28.43881 -27.77877 -27.56063 -24.63316 -23.38768 -21.70381 -21.48975 -20.52503 -18.37883 -17.53017 -17.07447 -16.78904 -16.05720 -16.02454 -14.96522 -14.90355 -14.70792 -14.34990 -14.17339 -13.99880 -13.78085 -13.77905 -13.64085 -13.33017 -13.02016 -12.91508 -12.78017 -12.64311 -12.41374 -12.30401 -12.03526 -11.87411 -11.78121 -11.59780 -11.52817 -11.25191 -10.63607 -9.48310 -9.44109 -9.02208 -8.22546 -6.33877 0.43374 0.46558 1.39454 1.43412 1.51448 2.39012 2.76439 3.09245 3.28140 3.71801 3.77029 3.93818 3.97525 3.99551 4.22946 4.27954 4.40195 4.46260 4.49750 4.59755 4.67824 4.74631 4.77405 4.81926 4.84557 4.88947 4.95688 5.01942 5.03681 5.08021 5.12804 5.19194 5.27776 5.32260 5.38637 5.63588 5.66782 5.68789 5.78098 6.01652 6.15903 6.30040 6.54552 6.82074 7.36336 8.88457 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034508 B = 0.004098 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.215127 B = 6830.262585 C = 7306.150473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.132 4.132 4 C -0.086 4.086 5 C -0.110 4.110 6 C -0.130 4.130 7 C -0.067 4.067 8 C -0.046 4.046 9 H 0.103 0.897 10 C -0.121 4.121 11 C 0.052 3.948 12 N -0.539 5.539 13 C 0.207 3.793 14 C -0.526 4.526 15 H 0.062 0.938 16 C 0.000 4.000 17 N -0.936 5.936 18 Si 0.973 3.027 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.267 1.267 22 C 0.050 3.950 23 C -0.141 4.141 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.142 0.858 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.136 0.864 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.033 0.967 36 H -0.038 1.038 37 H -0.003 1.003 38 H 0.265 0.735 39 H 0.071 0.929 40 H 0.026 0.974 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 20.766 6.213 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.086 4.086 5 C -0.166 4.166 6 C -0.148 4.148 7 C -0.067 4.067 8 C -0.065 4.065 9 H 0.121 0.879 10 C -0.159 4.159 11 C -0.076 4.076 12 N -0.263 5.263 13 C 0.080 3.920 14 C -0.564 4.564 15 H 0.080 0.920 16 C -0.198 4.198 17 N -0.576 5.576 18 Si 0.797 3.203 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.192 1.192 22 C -0.078 4.078 23 C -0.159 4.159 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.160 0.840 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.154 0.846 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.052 0.948 36 H -0.020 1.020 37 H 0.015 0.985 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.924 20.506 5.934 21.547 hybrid contribution -1.046 -1.238 0.028 1.621 sum 1.877 19.269 5.962 20.257 Atomic orbital electron populations 1.20827 0.90063 1.03343 1.02819 1.20144 0.97109 0.92880 0.98865 1.21161 0.93880 0.97738 1.02247 1.20246 0.94059 0.96110 0.98196 1.20820 1.00056 0.92662 1.03096 1.21122 1.00469 0.91073 1.02135 1.19687 0.93413 0.94405 0.99200 1.21284 1.00112 0.90899 0.94170 0.87910 1.22832 1.01511 0.93472 0.98084 1.22684 1.00929 0.96296 0.87718 1.63575 1.48546 1.04848 1.09332 1.19511 0.87867 0.91360 0.93253 1.21432 1.04919 0.91214 1.38884 0.91975 1.25970 0.94895 1.04177 0.94729 1.70091 1.13014 1.32759 1.41753 0.85387 0.78116 0.77885 0.78941 1.19106 1.20665 1.19220 1.23184 0.97994 0.88190 0.98424 1.20920 0.94219 0.97618 1.03166 0.90798 0.92154 0.89623 0.84018 0.90402 0.90345 0.90693 0.84571 0.92375 0.88556 0.90748 0.94836 1.02035 0.98458 0.92608 0.91050 0.95610 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 10.01 71.24 0.71 -1.54 16 2 C -0.09 -2.20 5.88 -19.87 -0.12 -2.32 16 3 C -0.13 -2.75 9.36 22.27 0.21 -2.55 16 4 C -0.09 -1.75 5.88 -19.87 -0.12 -1.87 16 5 C -0.11 -1.45 10.01 71.24 0.71 -0.74 16 6 C -0.13 -3.03 9.34 22.27 0.21 -2.82 16 7 C -0.07 -1.86 5.01 -19.87 -0.10 -1.96 16 8 C -0.05 -1.39 3.27 -9.99 -0.03 -1.43 16 9 H 0.10 2.80 7.96 -2.39 -0.02 2.79 16 10 C -0.12 -3.80 6.34 31.77 0.20 -3.60 16 11 C 0.05 2.07 6.39 86.64 0.55 2.63 16 12 N -0.54 -24.89 5.15 -889.11 -4.58 -29.46 16 13 C 0.21 11.68 4.30 85.56 0.37 12.05 16 14 C -0.53 -31.12 8.66 25.60 0.22 -30.90 16 15 H 0.06 3.59 7.78 -2.91 -0.02 3.57 16 16 C 0.00 0.01 5.46 84.65 0.46 0.47 16 17 N -0.94 -57.94 13.29 21.45 0.28 -57.66 16 18 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 C 0.05 1.94 6.11 86.94 0.53 2.47 16 23 C -0.14 -4.13 7.96 22.27 0.18 -3.95 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.06 1.26 8.09 -2.39 -0.02 1.24 16 26 H 0.08 1.29 8.09 -2.38 -0.02 1.27 16 27 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 30 H 0.07 0.87 8.09 -2.38 -0.02 0.85 16 31 H 0.14 2.63 7.99 -2.91 -0.02 2.61 16 32 H 0.06 1.90 7.11 -2.39 -0.02 1.88 16 33 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 34 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.03 1.51 7.31 -2.39 -0.02 1.49 16 36 H -0.04 -2.32 7.96 -2.39 -0.02 -2.34 16 37 H 0.00 -0.17 8.07 -2.39 -0.02 -0.18 16 38 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.03 1.07 6.42 -2.38 -0.02 1.06 16 41 H 0.10 3.26 7.02 -2.91 -0.02 3.24 16 Total: -1.00 -67.78 330.33 2.71 -65.08 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.98 Total: 10.77 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 3.99 Total: -36.04 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -4.29 Total: -87.12 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -67.78 2.71 -65.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335324507.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.475 kcal (2) G-P(sol) polarization free energy of solvation -67.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds