Wall clock time and date at job start Mon Mar 30 2020 07:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 110.05600 * 2 1 4 4 C 1.54263 * 110.03571 * 121.41787 * 2 1 3 5 5 C 1.54886 * 104.19679 * 142.89317 * 4 2 1 6 6 C 1.54895 * 102.74902 * 322.05915 * 5 4 2 7 7 C 1.53880 * 110.02985 * 238.58782 * 2 1 3 8 8 H 1.09004 * 110.03505 * 121.43112 * 7 2 1 9 9 N 1.46889 * 110.07504 * 0.02562 * 7 2 1 10 10 C 1.46907 * 111.00258 * 155.71860 * 9 7 2 11 11 C 1.50699 * 109.47433 * 180.02562 * 10 9 7 12 12 C 1.38637 * 119.74947 * 269.72832 * 11 10 9 13 13 C 1.37617 * 120.24457 * 179.76401 * 12 11 10 14 14 C 1.40715 * 119.74720 * 0.48159 * 13 12 11 15 15 C 1.41394 * 120.24518 * 179.78584 * 14 13 12 16 16 H 1.07994 * 120.00213 * 330.22632 * 15 14 13 17 17 C 1.39949 * 119.99718 * 150.21887 * 15 14 13 18 18 N 1.30834 * 119.99692 * 161.72558 * 17 15 14 19 19 Si 1.86794 * 120.00393 * 341.72544 * 17 15 14 20 20 H 1.48502 * 109.47482 * 95.40822 * 19 17 15 21 21 H 1.48496 * 109.47321 * 215.41307 * 19 17 15 22 22 H 1.48498 * 109.46978 * 335.41104 * 19 17 15 23 23 C 1.40721 * 119.51226 * 359.77151 * 14 13 12 24 24 C 1.37617 * 119.74156 * 359.97438 * 23 14 13 25 25 H 1.09005 * 109.47368 * 181.41381 * 1 2 3 26 26 H 1.08995 * 109.47268 * 301.41414 * 1 2 3 27 27 H 1.09000 * 109.47278 * 61.41500 * 1 2 3 28 28 H 1.08998 * 110.48336 * 24.21948 * 4 2 1 29 29 H 1.09000 * 110.60193 * 261.62889 * 4 2 1 30 30 H 1.09005 * 110.75929 * 203.74187 * 5 4 2 31 31 H 1.09004 * 110.91611 * 80.44501 * 5 4 2 32 32 H 1.08999 * 110.48275 * 279.26023 * 6 5 4 33 33 H 1.08999 * 110.59696 * 156.67573 * 6 5 4 34 34 H 1.00901 * 111.00447 * 279.67518 * 9 7 2 35 35 H 1.09001 * 109.46568 * 300.00112 * 10 9 7 36 36 H 1.09000 * 109.46633 * 60.00147 * 10 9 7 37 37 H 1.07999 * 119.87288 * 359.97438 * 12 11 10 38 38 H 1.08003 * 120.12476 * 180.23116 * 13 12 11 39 39 H 0.96997 * 119.99549 * 180.02562 * 18 17 15 40 40 H 1.08003 * 120.12630 * 179.97438 * 23 14 13 41 41 H 1.08002 * 119.87307 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 1.2368 5 6 3.3136 -1.5007 0.7190 6 6 2.8874 -1.9406 -0.7037 7 6 2.0570 -0.7535 -1.2338 8 1 2.6866 -0.0953 -1.8326 9 7 0.9335 -1.2461 -2.0417 10 6 1.3363 -1.4399 -3.4411 11 6 0.1603 -1.9440 -4.2373 12 6 -0.0554 -3.3083 -4.3569 13 6 -1.1289 -3.7798 -5.0775 14 6 -2.0033 -2.8716 -5.7025 15 6 -3.1069 -3.3446 -6.4491 16 1 -3.0508 -4.3000 -6.9495 17 6 -4.2721 -2.5746 -6.5397 18 7 -5.1412 -2.8124 -7.4883 19 14 -4.5864 -1.2075 -5.3062 20 1 -4.1229 0.0853 -5.8712 21 1 -6.0405 -1.1277 -5.0156 22 1 -3.8458 -1.4932 -4.0513 23 6 -1.7715 -1.4891 -5.5786 24 6 -0.6947 -1.0401 -4.8488 25 1 -0.3634 -1.0274 0.0254 26 1 -0.3633 0.5356 0.8770 27 1 -0.3634 0.4917 -0.9024 28 1 1.3143 -1.4660 1.5965 29 1 2.3294 -0.0553 2.0270 30 1 3.5326 -2.3679 1.3421 31 1 4.1730 -0.8316 0.6751 32 1 2.2771 -2.8426 -0.6572 33 1 3.7624 -2.1051 -1.3325 34 1 0.5545 -2.0969 -1.6535 35 1 1.6756 -0.4908 -3.8562 36 1 2.1464 -2.1676 -3.4885 37 1 0.6196 -4.0035 -3.8800 38 1 -1.2972 -4.8429 -5.1663 39 1 -5.9485 -2.2785 -7.5513 40 1 -2.4361 -0.7833 -6.0546 41 1 -0.5145 0.0204 -4.7527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337409937.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:56 Heat of formation + Delta-G solvation = -2.747689 kcal Electronic energy + Delta-G solvation = -19051.956669 eV Core-core repulsion = 16316.045943 eV Total energy + Delta-G solvation = -2735.910725 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.10786 -37.81056 -34.59701 -33.25938 -31.17160 -30.60693 -29.66805 -27.62545 -25.57026 -24.63513 -22.84702 -21.44984 -20.88745 -20.01742 -19.01930 -17.39379 -16.37553 -15.58907 -15.37091 -14.55606 -14.22459 -13.97201 -13.77532 -13.61180 -13.24075 -13.11388 -12.68290 -12.29381 -12.17189 -12.04679 -11.79320 -11.56639 -11.16002 -11.12660 -10.85734 -10.76144 -10.66715 -10.61861 -10.43398 -10.37794 -10.18775 -9.74345 -9.50832 -9.10221 -8.02505 -7.67353 -7.47937 -6.92638 -4.45596 2.58797 2.73028 3.14882 3.25262 3.37064 4.02445 4.34016 4.52818 4.57246 4.68854 4.97027 5.28361 5.36652 5.42019 5.47348 5.52081 5.56165 5.66016 5.73645 5.76613 5.82879 5.88680 5.97872 6.05316 6.12620 6.16432 6.19115 6.23177 6.28684 6.42770 6.59843 6.66658 6.88102 6.93230 7.21212 7.39852 7.46704 7.61290 7.72475 7.87671 7.92710 8.16330 8.38633 8.69302 8.83543 10.09863 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.032122 B = 0.004607 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.460532 B = 6076.788861 C = 6571.803323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.087 4.087 3 H 0.066 0.934 4 C -0.122 4.122 5 C -0.122 4.122 6 C -0.153 4.153 7 C 0.084 3.916 8 H 0.074 0.926 9 N -0.674 5.674 10 C 0.123 3.877 11 C -0.214 4.214 12 C -0.076 4.076 13 C -0.211 4.211 14 C 0.095 3.905 15 C -0.450 4.450 16 H 0.089 0.911 17 C 0.084 3.916 18 N -0.811 5.811 19 Si 0.912 3.088 20 H -0.271 1.271 21 H -0.292 1.292 22 H -0.243 1.243 23 C -0.240 4.240 24 C -0.054 4.054 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.341 0.659 35 H 0.061 0.939 36 H 0.020 0.980 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.284 0.716 40 H 0.099 0.901 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.734 4.442 13.440 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.106 4.106 3 H 0.085 0.915 4 C -0.160 4.160 5 C -0.160 4.160 6 C -0.193 4.193 7 C -0.027 4.027 8 H 0.092 0.908 9 N -0.304 5.304 10 C -0.005 4.005 11 C -0.215 4.215 12 C -0.095 4.095 13 C -0.230 4.230 14 C 0.092 3.908 15 C -0.479 4.479 16 H 0.107 0.893 17 C -0.134 4.134 18 N -0.435 5.435 19 Si 0.739 3.261 20 H -0.197 1.197 21 H -0.220 1.220 22 H -0.166 1.166 23 C -0.259 4.259 24 C -0.072 4.072 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.160 0.840 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.218 5.074 13.141 18.008 hybrid contribution 0.264 -0.264 0.393 0.542 sum 11.482 4.810 13.534 18.388 Atomic orbital electron populations 1.21530 0.93910 1.01798 1.00838 1.21760 0.97066 0.98428 0.93381 0.91543 1.22480 0.97133 0.98971 0.97391 1.22411 0.97762 0.99694 0.96171 1.23138 1.00368 0.99066 0.96693 1.22246 0.91013 0.95238 0.94175 0.90776 1.60828 1.30603 1.36915 1.02096 1.20582 0.94237 0.98507 0.87182 1.18938 1.01179 0.93015 1.08393 1.20480 0.96607 0.93999 0.98382 1.20977 0.99361 0.98058 1.04630 1.17734 0.92660 0.91191 0.89189 1.19507 0.96690 1.05707 1.25966 0.89301 1.26162 0.95554 0.96985 0.94714 1.69707 1.09689 1.37077 1.27025 0.86295 0.76458 0.80273 0.83077 1.19729 1.21990 1.16576 1.21027 1.00909 0.95635 1.08308 1.20415 0.94184 0.97071 0.95561 0.92830 0.94541 0.91405 0.91610 0.92112 0.92008 0.91750 0.91559 0.92039 0.84004 0.92005 0.96212 0.89362 0.88403 0.90517 0.88374 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 8.06 37.15 0.30 -1.21 16 2 C -0.09 -0.96 3.50 -89.50 -0.31 -1.28 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.12 -1.17 6.36 -25.08 -0.16 -1.33 16 5 C -0.12 -1.12 6.91 -24.74 -0.17 -1.29 16 6 C -0.15 -1.63 6.42 -25.07 -0.16 -1.79 16 7 C 0.08 1.00 3.21 -66.60 -0.21 0.79 16 8 H 0.07 0.90 7.82 -51.93 -0.41 0.49 16 9 N -0.67 -9.77 4.44 -106.81 -0.47 -10.24 16 10 C 0.12 1.97 5.63 -4.97 -0.03 1.95 16 11 C -0.21 -4.27 5.42 -104.33 -0.56 -4.83 16 12 C -0.08 -1.57 9.67 -39.66 -0.38 -1.95 16 13 C -0.21 -4.92 9.80 -38.87 -0.38 -5.30 16 14 C 0.10 2.44 5.11 -106.82 -0.55 1.90 16 15 C -0.45 -12.35 9.57 -37.74 -0.36 -12.71 16 16 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 17 C 0.08 2.25 5.40 -17.34 -0.09 2.15 16 18 N -0.81 -21.91 13.93 55.55 0.77 -21.14 16 19 Si 0.91 21.28 24.52 -169.99 -4.17 17.11 16 20 H -0.27 -6.16 6.71 56.52 0.38 -5.78 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.24 -5.84 6.86 56.52 0.39 -5.45 16 23 C -0.24 -5.84 7.18 -38.87 -0.28 -6.12 16 24 C -0.05 -1.17 9.67 -39.66 -0.38 -1.55 16 25 H 0.05 0.69 7.47 -51.93 -0.39 0.30 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.96 7.81 -51.93 -0.41 0.55 16 28 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.74 7.57 -51.93 -0.39 0.35 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.34 5.05 7.65 -39.29 -0.30 4.75 16 35 H 0.06 0.98 8.01 -51.93 -0.42 0.56 16 36 H 0.02 0.30 8.06 -51.93 -0.42 -0.12 16 37 H 0.09 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 39 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 40 H 0.10 2.41 4.73 -52.48 -0.25 2.16 16 41 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 321.78 15.07 4.85 4.85 Total: -1.00 -26.68 321.78 -9.54 -36.22 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.78 Total: 5.78 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: -3.74 Total: -32.57 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: 0.30 Total: -31.38 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.17 Total: 17.11 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.68 -9.54 -36.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337409937.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.471 kcal (2) G-P(sol) polarization free energy of solvation -26.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds