Wall clock time and date at job start Mon Mar 30 2020 07:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 110.05600 * 2 1 4 4 C 1.54263 * 110.03571 * 121.41787 * 2 1 3 5 5 C 1.54886 * 104.19679 * 142.89317 * 4 2 1 6 6 C 1.54895 * 102.74902 * 322.05915 * 5 4 2 7 7 C 1.53880 * 110.02985 * 238.58782 * 2 1 3 8 8 H 1.09004 * 110.03505 * 121.43112 * 7 2 1 9 9 N 1.46889 * 110.07504 * 0.02562 * 7 2 1 10 10 C 1.46907 * 111.00258 * 155.71860 * 9 7 2 11 11 C 1.50699 * 109.47433 * 180.02562 * 10 9 7 12 12 C 1.38637 * 119.74947 * 269.72832 * 11 10 9 13 13 C 1.37617 * 120.24457 * 179.76401 * 12 11 10 14 14 C 1.40715 * 119.74720 * 0.48159 * 13 12 11 15 15 C 1.41394 * 120.24518 * 179.78584 * 14 13 12 16 16 H 1.07994 * 120.00213 * 330.22632 * 15 14 13 17 17 C 1.39949 * 119.99718 * 150.21887 * 15 14 13 18 18 N 1.30834 * 119.99692 * 161.72558 * 17 15 14 19 19 Si 1.86794 * 120.00393 * 341.72544 * 17 15 14 20 20 H 1.48502 * 109.47482 * 95.40822 * 19 17 15 21 21 H 1.48496 * 109.47321 * 215.41307 * 19 17 15 22 22 H 1.48498 * 109.46978 * 335.41104 * 19 17 15 23 23 C 1.40721 * 119.51226 * 359.77151 * 14 13 12 24 24 C 1.37617 * 119.74156 * 359.97438 * 23 14 13 25 25 H 1.09005 * 109.47368 * 181.41381 * 1 2 3 26 26 H 1.08995 * 109.47268 * 301.41414 * 1 2 3 27 27 H 1.09000 * 109.47278 * 61.41500 * 1 2 3 28 28 H 1.08998 * 110.48336 * 24.21948 * 4 2 1 29 29 H 1.09000 * 110.60193 * 261.62889 * 4 2 1 30 30 H 1.09005 * 110.75929 * 203.74187 * 5 4 2 31 31 H 1.09004 * 110.91611 * 80.44501 * 5 4 2 32 32 H 1.08999 * 110.48275 * 279.26023 * 6 5 4 33 33 H 1.08999 * 110.59696 * 156.67573 * 6 5 4 34 34 H 1.00901 * 111.00447 * 279.67518 * 9 7 2 35 35 H 1.09001 * 109.46568 * 300.00112 * 10 9 7 36 36 H 1.09000 * 109.46633 * 60.00147 * 10 9 7 37 37 H 1.07999 * 119.87288 * 359.97438 * 12 11 10 38 38 H 1.08003 * 120.12476 * 180.23116 * 13 12 11 39 39 H 0.96997 * 119.99549 * 180.02562 * 18 17 15 40 40 H 1.08003 * 120.12630 * 179.97438 * 23 14 13 41 41 H 1.08002 * 119.87307 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 1.2368 5 6 3.3136 -1.5007 0.7190 6 6 2.8874 -1.9406 -0.7037 7 6 2.0570 -0.7535 -1.2338 8 1 2.6866 -0.0953 -1.8326 9 7 0.9335 -1.2461 -2.0417 10 6 1.3363 -1.4399 -3.4411 11 6 0.1603 -1.9440 -4.2373 12 6 -0.0554 -3.3083 -4.3569 13 6 -1.1289 -3.7798 -5.0775 14 6 -2.0033 -2.8716 -5.7025 15 6 -3.1069 -3.3446 -6.4491 16 1 -3.0508 -4.3000 -6.9495 17 6 -4.2721 -2.5746 -6.5397 18 7 -5.1412 -2.8124 -7.4883 19 14 -4.5864 -1.2075 -5.3062 20 1 -4.1229 0.0853 -5.8712 21 1 -6.0405 -1.1277 -5.0156 22 1 -3.8458 -1.4932 -4.0513 23 6 -1.7715 -1.4891 -5.5786 24 6 -0.6947 -1.0401 -4.8488 25 1 -0.3634 -1.0274 0.0254 26 1 -0.3633 0.5356 0.8770 27 1 -0.3634 0.4917 -0.9024 28 1 1.3143 -1.4660 1.5965 29 1 2.3294 -0.0553 2.0270 30 1 3.5326 -2.3679 1.3421 31 1 4.1730 -0.8316 0.6751 32 1 2.2771 -2.8426 -0.6572 33 1 3.7624 -2.1051 -1.3325 34 1 0.5545 -2.0969 -1.6535 35 1 1.6756 -0.4908 -3.8562 36 1 2.1464 -2.1676 -3.4885 37 1 0.6196 -4.0035 -3.8800 38 1 -1.2972 -4.8429 -5.1663 39 1 -5.9485 -2.2785 -7.5513 40 1 -2.4361 -0.7833 -6.0546 41 1 -0.5145 0.0204 -4.7527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337409937.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:56 Heat of formation + Delta-G solvation = -16.203104 kcal Electronic energy + Delta-G solvation = -19052.540139 eV Core-core repulsion = 16316.045943 eV Total energy + Delta-G solvation = -2736.494196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.17836 -39.42210 -36.10177 -34.90859 -32.32305 -31.96261 -31.47102 -28.92747 -26.90128 -25.62425 -24.39836 -23.22624 -21.77794 -21.64492 -19.95349 -19.34389 -17.62916 -17.13670 -16.46814 -15.87456 -15.75957 -15.61406 -15.20641 -14.75401 -14.53342 -14.26110 -14.09584 -14.04487 -13.75067 -13.20047 -13.02195 -12.90333 -12.74755 -12.59209 -12.20806 -12.03874 -11.87133 -11.71204 -11.58086 -11.47337 -11.40029 -11.27306 -11.24201 -10.97936 -9.47603 -9.39505 -9.06546 -8.89975 -6.48560 0.77880 0.90179 1.26177 1.39894 1.49081 2.12665 2.57430 3.35640 3.63676 3.73378 3.81859 4.09270 4.22243 4.28890 4.44155 4.46829 4.52776 4.58091 4.66010 4.69323 4.76802 4.79763 4.83367 4.89099 5.00546 5.07512 5.09220 5.12336 5.15164 5.26843 5.33933 5.35236 5.45106 5.53952 5.64007 5.68425 5.78276 5.92737 6.09335 6.27129 6.33360 6.44416 6.59356 6.76420 6.86158 8.18997 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.032122 B = 0.004607 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.460532 B = 6076.788861 C = 6571.803323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.086 4.086 3 H 0.073 0.927 4 C -0.119 4.119 5 C -0.118 4.118 6 C -0.151 4.151 7 C 0.084 3.916 8 H 0.076 0.924 9 N -0.681 5.681 10 C 0.128 3.872 11 C -0.188 4.188 12 C -0.074 4.074 13 C -0.223 4.223 14 C 0.072 3.928 15 C -0.490 4.490 16 H 0.054 0.946 17 C 0.049 3.951 18 N -0.853 5.853 19 Si 0.967 3.033 20 H -0.261 1.261 21 H -0.278 1.278 22 H -0.255 1.255 23 C -0.250 4.250 24 C -0.063 4.063 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.339 0.661 35 H 0.070 0.930 36 H 0.036 0.964 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.293 0.707 40 H 0.092 0.908 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.318 5.866 16.086 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.156 4.156 5 C -0.156 4.156 6 C -0.190 4.190 7 C -0.026 4.026 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.000 4.000 11 C -0.189 4.189 12 C -0.092 4.092 13 C -0.242 4.242 14 C 0.070 3.930 15 C -0.520 4.520 16 H 0.073 0.927 17 C -0.165 4.165 18 N -0.480 5.480 19 Si 0.790 3.210 20 H -0.186 1.186 21 H -0.205 1.205 22 H -0.179 1.179 23 C -0.270 4.270 24 C -0.082 4.082 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.158 0.842 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.141 0.859 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.814 6.498 15.790 21.963 hybrid contribution -0.282 -0.714 -0.307 0.826 sum 13.533 5.784 15.484 21.362 Atomic orbital electron populations 1.21469 0.94980 1.00995 1.00265 1.21763 0.96046 0.98969 0.93746 0.90870 1.22451 0.97175 0.99022 0.96995 1.22401 0.97778 1.00156 0.95222 1.23087 1.00127 0.98115 0.97685 1.22309 0.90351 0.95821 0.94147 0.90579 1.60749 1.32044 1.36875 1.01493 1.20521 0.92558 0.99247 0.87646 1.19478 1.00893 0.92574 1.05959 1.20831 0.96002 0.95114 0.97256 1.21190 0.99999 0.98113 1.04888 1.17871 0.92827 0.92371 0.89959 1.19493 0.98720 1.05289 1.28507 0.92738 1.26776 0.95008 0.98823 0.95884 1.69733 1.10725 1.38960 1.28580 0.85471 0.76852 0.78264 0.80373 1.18639 1.20450 1.17879 1.21120 1.01920 0.94957 1.08957 1.20744 0.93526 0.98790 0.95132 0.93787 0.93517 0.93487 0.92024 0.90829 0.91146 0.90788 0.92152 0.91599 0.84179 0.91118 0.94587 0.85884 0.88288 0.89694 0.89020 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 8.06 71.98 0.58 -2.08 16 2 C -0.09 -1.63 3.50 -10.07 -0.04 -1.67 16 3 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 4 C -0.12 -1.86 6.36 31.67 0.20 -1.66 16 5 C -0.12 -1.71 6.91 31.89 0.22 -1.49 16 6 C -0.15 -2.65 6.42 31.67 0.20 -2.45 16 7 C 0.08 1.71 3.21 45.64 0.15 1.85 16 8 H 0.08 1.55 7.82 -2.38 -0.02 1.53 16 9 N -0.68 -17.49 4.44 -491.83 -2.19 -19.67 16 10 C 0.13 3.61 5.63 85.56 0.48 4.10 16 11 C -0.19 -6.92 5.42 -19.67 -0.11 -7.03 16 12 C -0.07 -2.85 9.67 22.22 0.21 -2.63 16 13 C -0.22 -10.35 9.80 22.73 0.22 -10.12 16 14 C 0.07 3.77 5.11 -21.29 -0.11 3.66 16 15 C -0.49 -28.37 9.57 23.46 0.22 -28.15 16 16 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 17 C 0.05 2.72 5.40 85.26 0.46 3.18 16 18 N -0.85 -48.18 13.93 21.83 0.30 -47.87 16 19 Si 0.97 44.63 24.52 68.60 1.68 46.31 16 20 H -0.26 -11.46 6.71 99.48 0.67 -10.80 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.25 -12.11 6.86 99.48 0.68 -11.43 16 23 C -0.25 -12.13 7.18 22.73 0.16 -11.96 16 24 C -0.06 -2.62 9.67 22.22 0.21 -2.41 16 25 H 0.04 1.05 7.47 -2.38 -0.02 1.03 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 1.23 7.81 -2.39 -0.02 1.22 16 28 H 0.06 1.03 7.84 -2.39 -0.02 1.01 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.06 1.15 7.57 -2.39 -0.02 1.13 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.34 8.99 7.65 -89.69 -0.69 8.30 16 35 H 0.07 1.92 8.01 -2.39 -0.02 1.90 16 36 H 0.04 0.93 8.06 -2.39 -0.02 0.91 16 37 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 38 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 39 H 0.29 14.85 8.30 -92.71 -0.77 14.08 16 40 H 0.09 4.50 4.73 -2.91 -0.01 4.49 16 41 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -59.13 321.78 3.13 -56.00 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.25 Total: 24.10 kcal Atomic # 6 Polarization: -61.94 SS G_CDS: 3.08 Total: -58.86 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: -1.88 Total: -67.55 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.68 Total: 46.31 kcal Total: -59.13 3.13 -56.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337409937.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.794 kcal (2) G-P(sol) polarization free energy of solvation -59.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds