Wall clock time and date at job start Mon Mar 30 2020 07:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.53901 * 2 1 4 4 C 1.54888 * 110.48458 * 122.61415 * 2 1 3 5 5 C 1.54888 * 102.74547 * 156.61658 * 4 2 1 6 6 C 1.54265 * 104.19864 * 322.06151 * 5 4 2 7 7 C 1.53871 * 106.60027 * 23.60368 * 6 5 4 8 8 H 1.08998 * 110.03670 * 240.67280 * 7 6 5 9 9 N 1.46906 * 110.02926 * 119.28816 * 7 6 5 10 10 C 1.46901 * 110.99886 * 86.45554 * 9 7 6 11 11 C 1.50701 * 109.46990 * 179.97438 * 10 9 7 12 12 C 1.38635 * 119.74938 * 270.25654 * 11 10 9 13 13 C 1.37619 * 120.24352 * 180.25874 * 12 11 10 14 14 C 1.40711 * 119.74798 * 359.46791 * 13 12 11 15 15 C 1.41396 * 120.24787 * 180.29782 * 14 13 12 16 16 H 1.08005 * 119.99505 * 335.28837 * 15 14 13 17 17 C 1.39942 * 120.00083 * 155.28075 * 15 14 13 18 18 N 1.30817 * 120.00502 * 342.23482 * 17 15 14 19 19 Si 1.86807 * 119.99811 * 162.22853 * 17 15 14 20 20 H 1.48505 * 109.46906 * 94.66663 * 19 17 15 21 21 H 1.48499 * 109.47220 * 214.66572 * 19 17 15 22 22 H 1.48500 * 109.47278 * 334.66810 * 19 17 15 23 23 C 1.40719 * 119.50966 * 0.27391 * 14 13 12 24 24 C 1.37612 * 119.74521 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.47404 * 182.61164 * 1 2 3 26 26 H 1.08999 * 109.46856 * 302.60960 * 1 2 3 27 27 H 1.08996 * 109.47391 * 62.60854 * 1 2 3 28 28 H 1.08996 * 110.75507 * 38.30502 * 4 2 1 29 29 H 1.08998 * 110.75472 * 274.93122 * 4 2 1 30 30 H 1.09002 * 110.48853 * 203.37399 * 5 4 2 31 31 H 1.09001 * 110.48591 * 80.73791 * 5 4 2 32 32 H 1.09007 * 110.02985 * 264.32037 * 6 5 4 33 33 H 1.08998 * 110.07776 * 142.91771 * 6 5 4 34 34 H 1.00898 * 110.99954 * 322.49883 * 9 7 6 35 35 H 1.09003 * 109.46692 * 60.00047 * 10 9 7 36 36 H 1.08997 * 109.47290 * 300.00278 * 10 9 7 37 37 H 1.07995 * 119.87697 * 0.02562 * 12 11 10 38 38 H 1.07999 * 120.12174 * 179.73950 * 13 12 11 39 39 H 0.97001 * 120.00527 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.12678 * 180.02562 * 23 14 13 41 41 H 1.08006 * 119.87565 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0721 -0.7820 1.2222 5 6 3.4906 -1.1980 0.7599 6 6 3.3165 -1.5405 -0.7342 7 6 2.0698 -0.7789 -1.2173 8 1 1.3178 -1.4822 -1.5749 9 7 2.4354 0.1553 -2.2906 10 6 2.4113 -0.5112 -3.5995 11 6 2.7902 0.4762 -4.6730 12 6 1.8057 1.2317 -5.2912 13 6 2.1397 2.1325 -6.2765 14 6 3.4874 2.2933 -6.6479 15 6 3.8430 3.2204 -7.6546 16 1 3.1199 3.5083 -8.4033 17 6 5.1319 3.7649 -7.6805 18 7 5.8890 3.7049 -6.6154 19 14 5.7713 4.5774 -9.2364 20 1 5.5302 6.0411 -9.1654 21 1 7.2284 4.3215 -9.3655 22 1 5.0637 4.0158 -10.4149 23 6 4.4786 1.5249 -6.0098 24 6 4.1210 0.6257 -5.0315 25 1 -0.3634 -1.0266 0.0468 26 1 -0.3633 0.5538 0.8657 27 1 -0.3634 0.4728 -0.9124 28 1 1.4580 -1.6600 1.4222 29 1 2.1252 -0.1382 2.1001 30 1 3.8315 -2.0723 1.3145 31 1 4.1897 -0.3708 0.8826 32 1 3.1691 -2.6136 -0.8565 33 1 4.1925 -1.2177 -1.2966 34 1 3.3365 0.5737 -2.1144 35 1 1.4090 -0.8927 -3.7944 36 1 3.1211 -1.3384 -3.5991 37 1 0.7726 1.1101 -5.0011 38 1 1.3708 2.7170 -6.7597 39 1 6.7825 4.0820 -6.6335 40 1 5.5161 1.6406 -6.2868 41 1 4.8800 0.0345 -4.5406 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337409938.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:58 Heat of formation + Delta-G solvation = -21.987650 kcal Electronic energy + Delta-G solvation = -18776.593442 eV Core-core repulsion = 16039.848410 eV Total energy + Delta-G solvation = -2736.745033 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.04780 -39.24340 -36.17517 -34.83511 -32.09034 -31.86097 -31.12357 -28.83187 -27.14709 -25.61017 -24.27153 -22.87925 -21.76777 -21.25149 -20.62843 -19.20705 -17.26374 -16.85051 -16.58349 -15.89144 -15.57065 -15.46502 -15.14973 -14.63054 -14.51252 -14.25954 -13.94306 -13.79029 -13.46464 -13.38930 -12.92149 -12.85020 -12.62787 -12.53496 -12.27174 -12.04652 -11.92903 -11.81504 -11.53688 -11.47934 -11.37862 -11.28748 -11.18574 -10.98416 -9.38147 -9.24170 -9.07321 -8.63013 -6.32310 0.95791 1.16860 1.37686 1.48470 1.54255 2.21130 2.70316 3.40229 3.70066 3.76510 3.83826 4.07205 4.30652 4.36370 4.40386 4.56281 4.57351 4.60535 4.67683 4.69160 4.72724 4.82488 4.85205 4.98598 5.04868 5.05735 5.09448 5.17313 5.24216 5.32571 5.34751 5.38987 5.44084 5.49177 5.58987 5.72596 5.97858 6.11482 6.24429 6.34506 6.41525 6.56669 6.71779 6.95629 7.05670 8.34172 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.036812 B = 0.003798 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.433053 B = 7370.590205 C = 7664.100984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.063 0.937 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.153 4.153 7 C 0.085 3.915 8 H 0.076 0.924 9 N -0.686 5.686 10 C 0.133 3.867 11 C -0.200 4.200 12 C -0.073 4.073 13 C -0.245 4.245 14 C 0.080 3.920 15 C -0.505 4.505 16 H 0.073 0.927 17 C 0.036 3.964 18 N -0.826 5.826 19 Si 0.981 3.019 20 H -0.262 1.262 21 H -0.265 1.265 22 H -0.259 1.259 23 C -0.190 4.190 24 C -0.098 4.098 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.336 0.664 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.287 0.713 40 H 0.098 0.902 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.072 -8.526 12.099 15.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.082 0.918 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.193 4.193 7 C -0.025 4.025 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.005 3.995 11 C -0.201 4.201 12 C -0.092 4.092 13 C -0.265 4.265 14 C 0.077 3.923 15 C -0.534 4.534 16 H 0.091 0.909 17 C -0.179 4.179 18 N -0.452 5.452 19 Si 0.802 3.198 20 H -0.187 1.187 21 H -0.189 1.189 22 H -0.183 1.183 23 C -0.209 4.209 24 C -0.117 4.117 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.154 0.846 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.129 0.871 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.498 -8.209 12.126 15.319 hybrid contribution 1.317 0.150 -0.833 1.566 sum -3.181 -8.059 11.293 14.234 Atomic orbital electron populations 1.21703 0.94433 1.01796 1.01377 1.21950 0.96020 0.98993 0.93573 0.91824 1.22553 0.95686 0.99970 0.97008 1.22293 0.97533 1.01254 0.94712 1.22898 0.97938 1.00923 0.97502 1.22405 0.96183 0.92664 0.91285 0.90533 1.60675 1.36213 1.33465 1.01235 1.20460 0.99671 0.92601 0.86747 1.19367 0.92626 1.04867 1.03246 1.20636 0.98056 0.95234 0.95242 1.21177 0.95879 1.05496 1.03928 1.17956 0.91905 0.90864 0.91542 1.19841 0.98274 1.23262 1.12057 0.90871 1.26742 0.96089 0.95093 0.99953 1.69880 1.09893 1.36050 1.29420 0.85216 0.78079 0.78675 0.77860 1.18718 1.18937 1.18316 1.21236 0.99039 0.99096 1.01557 1.20761 0.95424 0.98053 0.97449 0.92107 0.92083 0.93825 0.90498 0.90832 0.90634 0.92204 0.91205 0.93036 0.84593 0.91161 0.95416 0.87088 0.88834 0.90209 0.88361 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.12 71.98 0.66 -2.05 16 2 C -0.09 -1.87 3.16 -9.72 -0.03 -1.90 16 3 H 0.06 1.61 8.05 -2.39 -0.02 1.59 16 4 C -0.11 -1.95 6.33 31.88 0.20 -1.75 16 5 C -0.12 -2.17 6.83 31.67 0.22 -1.96 16 6 C -0.15 -3.29 6.37 31.32 0.20 -3.09 16 7 C 0.08 2.04 2.80 45.64 0.13 2.17 16 8 H 0.08 1.83 7.53 -2.39 -0.02 1.81 16 9 N -0.69 -21.18 6.19 -491.82 -3.04 -24.22 16 10 C 0.13 4.47 5.62 85.56 0.48 4.95 16 11 C -0.20 -8.52 5.42 -19.67 -0.11 -8.63 16 12 C -0.07 -3.30 9.67 22.22 0.21 -3.09 16 13 C -0.25 -12.55 9.80 22.73 0.22 -12.32 16 14 C 0.08 4.45 5.57 -21.29 -0.12 4.33 16 15 C -0.50 -28.19 9.05 23.46 0.21 -27.98 16 16 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 17 C 0.04 1.85 5.14 85.26 0.44 2.29 16 18 N -0.83 -44.30 10.97 21.82 0.24 -44.06 16 19 Si 0.98 39.06 29.59 68.60 2.03 41.09 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 23 C -0.19 -10.24 8.70 22.73 0.20 -10.04 16 24 C -0.10 -4.58 9.67 22.22 0.21 -4.36 16 25 H 0.06 1.05 8.12 -2.39 -0.02 1.04 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.08 1.15 8.04 -2.39 -0.02 1.13 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.36 8.14 -2.38 -0.02 1.35 16 33 H 0.05 1.24 7.59 -2.39 -0.02 1.22 16 34 H 0.34 10.98 8.18 -89.70 -0.73 10.24 16 35 H 0.07 2.23 8.01 -2.39 -0.02 2.21 16 36 H 0.03 0.88 8.04 -2.39 -0.02 0.86 16 37 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 39 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 40 H 0.10 5.55 6.18 -2.91 -0.02 5.54 16 41 H 0.10 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -58.66 330.27 2.61 -56.05 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: 0.26 Total: 34.56 kcal Atomic # 6 Polarization: -66.54 SS G_CDS: 3.13 Total: -63.42 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -2.80 Total: -68.28 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -58.66 2.61 -56.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337409938.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.058 kcal (2) G-P(sol) polarization free energy of solvation -58.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds