Wall clock time and date at job start Mon Mar 30 2020 06:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47268 * 2 1 4 4 C 1.53003 * 109.47287 * 120.00043 * 2 1 3 5 5 N 1.46901 * 115.55013 * 62.59757 * 4 2 1 6 6 C 1.46904 * 110.99952 * 65.71879 * 5 4 2 7 7 C 1.50695 * 109.47573 * 176.23809 * 6 5 4 8 8 C 1.38637 * 119.74855 * 89.99319 * 7 6 5 9 9 C 1.37615 * 120.24594 * 179.97438 * 8 7 6 10 10 C 1.40720 * 119.74830 * 0.02698 * 9 8 7 11 11 C 1.41395 * 120.24492 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99577 * 333.01057 * 11 10 9 13 13 C 1.39945 * 120.00100 * 153.01200 * 11 10 9 14 14 N 1.30818 * 119.99968 * 342.74443 * 13 11 10 15 15 Si 1.86794 * 120.00015 * 162.73829 * 13 11 10 16 16 H 1.48504 * 109.47094 * 94.91851 * 15 13 11 17 17 H 1.48497 * 109.47383 * 214.91852 * 15 13 11 18 18 H 1.48506 * 109.47225 * 334.91938 * 15 13 11 19 19 C 1.40713 * 119.50796 * 0.25025 * 10 9 8 20 20 C 1.37621 * 119.74609 * 359.46954 * 19 10 9 21 21 C 1.53000 * 117.50134 * 208.27519 * 4 2 1 22 22 C 1.52999 * 117.49532 * 276.93383 * 4 2 1 23 23 H 1.09001 * 109.47535 * 302.06886 * 1 2 3 24 24 H 1.08997 * 109.47438 * 62.07212 * 1 2 3 25 25 H 1.09007 * 109.46995 * 182.06745 * 1 2 3 26 26 H 1.09004 * 109.47243 * 239.99446 * 2 1 3 27 27 H 1.09000 * 109.47170 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47213 * 299.99765 * 3 2 1 29 29 H 1.08999 * 109.46991 * 59.99632 * 3 2 1 30 30 H 1.00898 * 111.00107 * 189.66479 * 5 4 2 31 31 H 1.08998 * 109.46741 * 56.23209 * 6 5 4 32 32 H 1.09001 * 109.46920 * 296.23892 * 6 5 4 33 33 H 1.08001 * 119.87501 * 359.97438 * 8 7 6 34 34 H 1.08006 * 120.12702 * 180.02562 * 9 8 7 35 35 H 0.96994 * 120.00472 * 180.02562 * 14 13 11 36 36 H 1.07995 * 120.12386 * 179.72642 * 19 10 9 37 37 H 1.07997 * 119.87388 * 180.26959 * 20 19 10 38 38 H 1.09002 * 117.49591 * 215.00599 * 21 4 2 39 39 H 1.08995 * 117.49538 * 0.02562 * 21 4 2 40 40 H 1.08994 * 117.50208 * 359.97438 * 22 4 2 41 41 H 1.09010 * 117.49766 * 144.97455 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6761 -2.1406 1.3543 6 6 2.3170 -2.9284 0.2928 7 6 1.9961 -4.3879 0.4869 8 6 0.8679 -4.9295 -0.1095 9 6 0.5655 -6.2612 0.0605 10 6 1.4061 -7.0736 0.8437 11 6 1.1051 -8.4431 1.0259 12 1 0.0820 -8.7837 0.9658 13 6 2.1329 -9.3572 1.2841 14 7 3.3747 -9.0343 1.0290 15 14 1.7316 -11.0381 1.9930 16 1 1.6101 -12.0245 0.8895 17 1 2.8169 -11.4584 2.9153 18 1 0.4487 -10.9679 2.7376 19 6 2.5454 -6.5117 1.4491 20 6 2.8315 -5.1788 1.2606 21 6 3.4023 -0.2984 1.8025 22 6 2.1210 0.0852 2.5469 23 1 -0.3634 0.5456 0.8708 24 1 -0.3634 0.4813 -0.9079 25 1 -0.3633 -1.0271 0.0371 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.9073 -2.5066 2.2657 31 1 3.3966 -2.7848 0.3353 32 1 1.9448 -2.6005 -0.6779 33 1 0.2239 -4.3039 -0.7098 34 1 -0.3138 -6.6812 -0.4053 35 1 4.0871 -9.6679 1.2076 36 1 3.1950 -7.1251 2.0558 37 1 3.7077 -4.7464 1.7206 38 1 4.0287 -1.0734 2.2443 39 1 3.9350 0.4940 1.2767 40 1 1.8114 1.1296 2.5106 41 1 1.9040 -0.4374 3.4787 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339514663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:55 Heat of formation + Delta-G solvation = 26.549155 kcal Electronic energy + Delta-G solvation = -18882.481929 eV Core-core repulsion = 16147.841610 eV Total energy + Delta-G solvation = -2734.640319 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.26313 -37.53262 -34.32333 -33.20230 -32.43397 -29.68288 -29.21507 -27.09585 -26.02114 -23.25561 -23.03873 -22.15446 -20.97101 -19.81760 -18.31697 -17.26721 -16.16873 -15.78555 -15.18514 -14.40081 -14.28996 -13.93161 -13.77310 -13.31317 -13.00122 -12.78434 -12.42859 -12.30540 -12.01030 -11.92956 -11.62025 -11.52185 -11.30667 -11.11070 -11.05062 -10.95549 -10.83577 -10.57441 -10.36088 -10.22164 -9.74702 -9.51743 -9.35756 -9.12475 -7.94195 -7.43296 -7.25990 -6.75094 -4.33942 2.74634 3.07307 3.09189 3.11731 3.18465 3.85138 3.94580 4.39513 4.67583 4.73673 4.85077 4.95810 5.17033 5.31395 5.43379 5.64089 5.69214 5.71469 5.80552 5.83623 5.90739 5.94739 6.00600 6.04349 6.15107 6.21084 6.33967 6.35515 6.41156 6.43925 6.53077 6.95423 7.09842 7.27174 7.37853 7.45064 7.63233 7.74683 7.90591 8.06877 8.14500 8.32088 8.65080 8.91055 8.98940 10.20911 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.043872 B = 0.003835 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.066481 B = 7298.929281 C = 7598.065723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.049 4.049 3 C -0.152 4.152 4 C 0.067 3.933 5 N -0.645 5.645 6 C 0.127 3.873 7 C -0.214 4.214 8 C -0.068 4.068 9 C -0.227 4.227 10 C 0.115 3.885 11 C -0.466 4.466 12 H 0.077 0.923 13 C 0.077 3.923 14 N -0.796 5.796 15 Si 0.906 3.094 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.260 1.260 19 C -0.163 4.163 20 C -0.095 4.095 21 C -0.225 4.225 22 C -0.176 4.176 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.342 0.658 31 H 0.021 0.979 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.280 0.720 36 H 0.112 0.888 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.390 14.004 0.529 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.068 4.068 3 C -0.210 4.210 4 C -0.026 4.026 5 N -0.274 5.274 6 C 0.000 4.000 7 C -0.216 4.216 8 C -0.087 4.087 9 C -0.246 4.246 10 C 0.112 3.888 11 C -0.496 4.496 12 H 0.095 0.905 13 C -0.141 4.141 14 N -0.421 5.421 15 Si 0.730 3.270 16 H -0.196 1.196 17 H -0.201 1.201 18 H -0.184 1.184 19 C -0.183 4.183 20 C -0.114 4.114 21 C -0.264 4.264 22 C -0.214 4.214 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.161 0.839 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.753 13.951 0.176 13.972 hybrid contribution 0.993 -0.890 0.712 1.511 sum 0.239 13.061 0.888 13.093 Atomic orbital electron populations 1.21671 0.94283 1.02952 1.00440 1.20443 0.96417 0.94361 0.95606 1.22017 1.01021 0.96191 1.01730 1.21741 0.96173 0.90146 0.94540 1.60436 1.60984 0.98551 1.07405 1.20516 0.94706 0.90833 0.93913 1.18924 1.00098 0.93119 1.09430 1.20345 0.95396 0.94539 0.98450 1.21008 1.03296 0.94321 1.06002 1.17615 0.90673 0.92793 0.87695 1.19584 0.94581 0.92131 1.43291 0.90479 1.25887 0.94470 1.00762 0.92935 1.69823 1.00643 1.36687 1.34974 0.86345 0.79522 0.81484 0.79636 1.19616 1.20089 1.18431 1.21198 1.00574 0.93160 1.03340 1.20514 0.97447 0.94617 0.98840 1.23702 0.92251 1.04497 1.05996 1.23172 1.01510 1.00717 0.95966 0.93152 0.93552 0.91191 0.90933 0.92542 0.92586 0.92443 0.83900 0.96100 0.91931 0.89422 0.89073 0.90964 0.86970 0.89984 0.89346 0.88750 0.88489 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.13 37.15 0.34 -1.27 16 2 C -0.05 -0.59 2.87 -90.62 -0.26 -0.85 16 3 C -0.15 -1.46 8.26 37.16 0.31 -1.15 16 4 C 0.07 0.87 1.72 -131.60 -0.23 0.64 16 5 N -0.64 -10.22 6.38 -101.22 -0.65 -10.87 16 6 C 0.13 2.25 5.55 -4.98 -0.03 2.23 16 7 C -0.21 -4.62 5.38 -104.33 -0.56 -5.18 16 8 C -0.07 -1.55 9.67 -39.66 -0.38 -1.93 16 9 C -0.23 -5.63 9.80 -38.87 -0.38 -6.01 16 10 C 0.11 3.08 5.54 -106.82 -0.59 2.49 16 11 C -0.47 -12.49 9.04 -37.74 -0.34 -12.83 16 12 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 13 C 0.08 1.95 5.13 -17.34 -0.09 1.86 16 14 N -0.80 -20.76 11.11 55.55 0.62 -20.14 16 15 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 16 16 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 17 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 19 C -0.16 -4.25 8.68 -38.87 -0.34 -4.58 16 20 C -0.10 -2.20 9.67 -39.66 -0.38 -2.59 16 21 C -0.22 -2.69 9.67 -26.69 -0.26 -2.95 16 22 C -0.18 -2.02 9.60 -26.69 -0.26 -2.28 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 26 H 0.07 0.93 7.11 -51.93 -0.37 0.56 16 27 H 0.06 0.52 6.30 -51.93 -0.33 0.20 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.52 6.33 -51.93 -0.33 0.19 16 30 H 0.34 5.58 8.55 -39.29 -0.34 5.24 16 31 H 0.02 0.37 8.04 -51.93 -0.42 -0.05 16 32 H 0.06 1.08 7.04 -51.93 -0.37 0.72 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 34 H 0.09 2.15 8.06 -52.48 -0.42 1.72 16 35 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 36 H 0.11 3.02 6.35 -52.49 -0.33 2.68 16 37 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.09 1.02 6.15 -51.93 -0.32 0.70 16 40 H 0.10 0.98 6.34 -51.93 -0.33 0.65 16 41 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 LS Contribution 329.36 15.07 4.96 4.96 Total: -1.00 -26.64 329.36 -10.02 -36.66 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -6.47 Total: 10.04 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: -3.45 Total: -34.40 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: -0.03 Total: -31.01 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.64 -10.02 -36.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339514663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.207 kcal (2) G-P(sol) polarization free energy of solvation -26.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds