Wall clock time and date at job start Mon Mar 30 2020 06:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47268 * 2 1 4 4 C 1.53003 * 109.47287 * 120.00043 * 2 1 3 5 5 N 1.46901 * 115.55013 * 62.59757 * 4 2 1 6 6 C 1.46904 * 110.99952 * 65.71879 * 5 4 2 7 7 C 1.50695 * 109.47573 * 176.23809 * 6 5 4 8 8 C 1.38637 * 119.74855 * 89.99319 * 7 6 5 9 9 C 1.37615 * 120.24594 * 179.97438 * 8 7 6 10 10 C 1.40720 * 119.74830 * 0.02698 * 9 8 7 11 11 C 1.41395 * 120.24492 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99577 * 333.01057 * 11 10 9 13 13 C 1.39945 * 120.00100 * 153.01200 * 11 10 9 14 14 N 1.30818 * 119.99968 * 342.74443 * 13 11 10 15 15 Si 1.86794 * 120.00015 * 162.73829 * 13 11 10 16 16 H 1.48504 * 109.47094 * 94.91851 * 15 13 11 17 17 H 1.48497 * 109.47383 * 214.91852 * 15 13 11 18 18 H 1.48506 * 109.47225 * 334.91938 * 15 13 11 19 19 C 1.40713 * 119.50796 * 0.25025 * 10 9 8 20 20 C 1.37621 * 119.74609 * 359.46954 * 19 10 9 21 21 C 1.53000 * 117.50134 * 208.27519 * 4 2 1 22 22 C 1.52999 * 117.49532 * 276.93383 * 4 2 1 23 23 H 1.09001 * 109.47535 * 302.06886 * 1 2 3 24 24 H 1.08997 * 109.47438 * 62.07212 * 1 2 3 25 25 H 1.09007 * 109.46995 * 182.06745 * 1 2 3 26 26 H 1.09004 * 109.47243 * 239.99446 * 2 1 3 27 27 H 1.09000 * 109.47170 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47213 * 299.99765 * 3 2 1 29 29 H 1.08999 * 109.46991 * 59.99632 * 3 2 1 30 30 H 1.00898 * 111.00107 * 189.66479 * 5 4 2 31 31 H 1.08998 * 109.46741 * 56.23209 * 6 5 4 32 32 H 1.09001 * 109.46920 * 296.23892 * 6 5 4 33 33 H 1.08001 * 119.87501 * 359.97438 * 8 7 6 34 34 H 1.08006 * 120.12702 * 180.02562 * 9 8 7 35 35 H 0.96994 * 120.00472 * 180.02562 * 14 13 11 36 36 H 1.07995 * 120.12386 * 179.72642 * 19 10 9 37 37 H 1.07997 * 119.87388 * 180.26959 * 20 19 10 38 38 H 1.09002 * 117.49591 * 215.00599 * 21 4 2 39 39 H 1.08995 * 117.49538 * 0.02562 * 21 4 2 40 40 H 1.08994 * 117.50208 * 359.97438 * 22 4 2 41 41 H 1.09010 * 117.49766 * 144.97455 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6761 -2.1406 1.3543 6 6 2.3170 -2.9284 0.2928 7 6 1.9961 -4.3879 0.4869 8 6 0.8679 -4.9295 -0.1095 9 6 0.5655 -6.2612 0.0605 10 6 1.4061 -7.0736 0.8437 11 6 1.1051 -8.4431 1.0259 12 1 0.0820 -8.7837 0.9658 13 6 2.1329 -9.3572 1.2841 14 7 3.3747 -9.0343 1.0290 15 14 1.7316 -11.0381 1.9930 16 1 1.6101 -12.0245 0.8895 17 1 2.8169 -11.4584 2.9153 18 1 0.4487 -10.9679 2.7376 19 6 2.5454 -6.5117 1.4491 20 6 2.8315 -5.1788 1.2606 21 6 3.4023 -0.2984 1.8025 22 6 2.1210 0.0852 2.5469 23 1 -0.3634 0.5456 0.8708 24 1 -0.3634 0.4813 -0.9079 25 1 -0.3633 -1.0271 0.0371 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.9073 -2.5066 2.2657 31 1 3.3966 -2.7848 0.3353 32 1 1.9448 -2.6005 -0.6779 33 1 0.2239 -4.3039 -0.7098 34 1 -0.3138 -6.6812 -0.4053 35 1 4.0871 -9.6679 1.2076 36 1 3.1950 -7.1251 2.0558 37 1 3.7077 -4.7464 1.7206 38 1 4.0287 -1.0734 2.2443 39 1 3.9350 0.4940 1.2767 40 1 1.8114 1.1296 2.5106 41 1 1.9040 -0.4374 3.4787 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339514663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:54 Heat of formation + Delta-G solvation = 13.590900 kcal Electronic energy + Delta-G solvation = -18883.043841 eV Core-core repulsion = 16147.841610 eV Total energy + Delta-G solvation = -2735.202231 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.35248 -39.30796 -36.01368 -34.54939 -33.62046 -31.43758 -31.08708 -28.19464 -27.50830 -24.87229 -23.98693 -23.15880 -22.87348 -21.60961 -19.30968 -19.20522 -17.32540 -17.15245 -16.76629 -15.93263 -15.59226 -15.42701 -15.21573 -14.83245 -14.30921 -13.98651 -13.81444 -13.76215 -13.58977 -13.21996 -12.95797 -12.83462 -12.72572 -12.51794 -12.38642 -12.31452 -12.00972 -11.90840 -11.73992 -11.34503 -11.33347 -11.20898 -11.02431 -10.68601 -9.39236 -9.25395 -9.03054 -8.63782 -6.33662 0.93967 1.15034 1.37528 1.47675 1.53540 2.21064 2.67146 2.89604 3.33294 3.75927 3.79808 3.88977 4.03399 4.29309 4.32226 4.36874 4.46515 4.51535 4.59351 4.68566 4.74327 4.82032 4.90376 4.94427 5.00573 5.04809 5.09882 5.17428 5.19464 5.25570 5.33961 5.35848 5.46720 5.49839 5.57790 5.71772 5.95040 6.10324 6.18960 6.27644 6.40378 6.51285 6.70278 6.94801 7.03983 8.34665 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.043872 B = 0.003835 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.066481 B = 7298.929281 C = 7598.065723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.050 4.050 3 C -0.147 4.147 4 C 0.049 3.951 5 N -0.651 5.651 6 C 0.139 3.861 7 C -0.200 4.200 8 C -0.072 4.072 9 C -0.243 4.243 10 C 0.082 3.918 11 C -0.506 4.506 12 H 0.073 0.927 13 C 0.036 3.964 14 N -0.829 5.829 15 Si 0.981 3.019 16 H -0.262 1.262 17 H -0.266 1.266 18 H -0.259 1.259 19 C -0.186 4.186 20 C -0.098 4.098 21 C -0.220 4.220 22 C -0.164 4.164 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.338 0.662 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.287 0.713 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.329 15.823 0.637 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.069 4.069 3 C -0.204 4.204 4 C -0.043 4.043 5 N -0.279 5.279 6 C 0.011 3.989 7 C -0.201 4.201 8 C -0.090 4.090 9 C -0.262 4.262 10 C 0.080 3.920 11 C -0.536 4.536 12 H 0.092 0.908 13 C -0.178 4.178 14 N -0.455 5.455 15 Si 0.801 3.199 16 H -0.187 1.187 17 H -0.190 1.190 18 H -0.183 1.183 19 C -0.205 4.205 20 C -0.117 4.117 21 C -0.260 4.260 22 C -0.202 4.202 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.156 0.844 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.130 0.870 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.128 0.872 40 H 0.134 0.866 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.694 15.796 0.277 15.814 hybrid contribution 0.978 -1.276 0.644 1.732 sum 0.284 14.520 0.921 14.552 Atomic orbital electron populations 1.21629 0.94387 1.01560 1.01410 1.20476 0.96319 0.95654 0.94431 1.21974 1.01239 0.94479 1.02727 1.21876 0.97577 0.88619 0.96203 1.60343 1.61011 1.00079 1.06483 1.20350 0.95071 0.88436 0.95017 1.19342 0.98650 0.95169 1.06950 1.20642 0.96000 0.93963 0.98428 1.21209 1.03439 0.95384 1.06179 1.17950 0.91703 0.93564 0.88802 1.19824 0.94997 0.92966 1.45812 0.90846 1.26728 0.93975 1.04590 0.92533 1.69873 1.01612 1.38397 1.35665 0.85219 0.79345 0.76333 0.78962 1.18702 1.19004 1.18325 1.21163 1.00786 0.94315 1.04285 1.20748 0.98293 0.93767 0.98861 1.23710 0.91941 1.04553 1.05758 1.23252 1.00611 1.01377 0.94912 0.92620 0.92205 0.93666 0.92072 0.92138 0.91494 0.91593 0.84397 0.95742 0.91179 0.86972 0.88714 0.90232 0.88759 0.88041 0.90345 0.87209 0.86552 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.13 71.98 0.66 -2.19 16 2 C -0.05 -1.06 2.87 -10.80 -0.03 -1.09 16 3 C -0.15 -2.31 8.26 71.98 0.59 -1.72 16 4 C 0.05 1.18 1.72 3.53 0.01 1.18 16 5 N -0.65 -19.63 6.38 -474.14 -3.03 -22.66 16 6 C 0.14 4.69 5.55 85.55 0.47 5.17 16 7 C -0.20 -8.47 5.38 -19.68 -0.11 -8.58 16 8 C -0.07 -3.21 9.67 22.22 0.21 -3.00 16 9 C -0.24 -12.31 9.80 22.73 0.22 -12.09 16 10 C 0.08 4.57 5.54 -21.29 -0.12 4.45 16 11 C -0.51 -28.18 9.04 23.46 0.21 -27.97 16 12 H 0.07 3.96 7.90 -2.91 -0.02 3.93 16 13 C 0.04 1.87 5.13 85.26 0.44 2.31 16 14 N -0.83 -44.47 11.11 21.83 0.24 -44.23 16 15 Si 0.98 39.08 29.59 68.60 2.03 41.11 16 16 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 17 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 18 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 19 C -0.19 -9.99 8.68 22.73 0.20 -9.79 16 20 C -0.10 -4.55 9.67 22.22 0.21 -4.34 16 21 C -0.22 -4.71 9.67 30.62 0.30 -4.41 16 22 C -0.16 -3.31 9.60 30.62 0.29 -3.02 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.04 1.19 7.93 -2.38 -0.02 1.17 16 26 H 0.06 1.43 7.11 -2.38 -0.02 1.42 16 27 H 0.06 0.91 6.30 -2.39 -0.02 0.90 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.93 6.33 -2.39 -0.02 0.92 16 30 H 0.34 10.62 8.55 -89.70 -0.77 9.85 16 31 H 0.02 0.81 8.04 -2.39 -0.02 0.79 16 32 H 0.07 2.29 7.04 -2.39 -0.02 2.27 16 33 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 34 H 0.09 4.59 8.06 -2.91 -0.02 4.56 16 35 H 0.29 13.89 8.30 -92.71 -0.77 13.13 16 36 H 0.09 5.31 6.35 -2.91 -0.02 5.29 16 37 H 0.10 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.11 2.02 6.15 -2.39 -0.01 2.00 16 40 H 0.12 1.91 6.34 -2.39 -0.02 1.90 16 41 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -58.55 329.36 3.06 -55.49 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: 0.24 Total: 35.37 kcal Atomic # 6 Polarization: -68.65 SS G_CDS: 3.57 Total: -65.09 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -2.78 Total: -66.89 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -58.55 3.06 -55.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339514663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.082 kcal (2) G-P(sol) polarization free energy of solvation -58.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds