Wall clock time and date at job start Mon Mar 30 2020 06:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 110.00802 * 2 1 4 4 C 1.54323 * 109.88551 * 238.88880 * 2 1 3 5 5 C 1.55431 * 103.04591 * 262.87621 * 4 2 1 6 6 C 1.54901 * 101.52119 * 324.36788 * 5 4 2 7 7 N 1.47442 * 109.88925 * 121.12043 * 2 1 3 8 8 C 1.46901 * 111.00030 * 242.66085 * 7 2 1 9 9 C 1.50692 * 109.47100 * 175.33097 * 8 7 2 10 10 C 1.38634 * 119.75047 * 273.58681 * 9 8 7 11 11 C 1.37617 * 120.25164 * 179.72512 * 10 9 8 12 12 C 1.40721 * 119.73940 * 0.56709 * 11 10 9 13 13 C 1.41401 * 120.24035 * 179.68343 * 12 11 10 14 14 H 1.07998 * 119.99771 * 27.86284 * 13 12 11 15 15 C 1.39948 * 119.99888 * 207.86185 * 13 12 11 16 16 N 1.30825 * 119.99878 * 12.13607 * 15 13 12 17 17 Si 1.86795 * 119.99997 * 192.13909 * 15 13 12 18 18 H 1.48497 * 109.47428 * 59.99798 * 17 15 13 19 19 H 1.48498 * 109.47039 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46862 * 299.99429 * 17 15 13 21 21 C 1.40707 * 119.51383 * 359.71065 * 12 11 10 22 22 C 1.37618 * 119.74784 * 359.97438 * 21 12 11 23 23 H 1.09005 * 109.47036 * 298.87998 * 1 2 3 24 24 H 1.09001 * 109.47398 * 58.88047 * 1 2 3 25 25 H 1.09002 * 109.47031 * 178.88340 * 1 2 3 26 26 H 1.09005 * 109.46985 * 177.45161 * 3 2 1 27 27 H 1.08994 * 109.47747 * 297.45502 * 3 2 1 28 28 H 1.09000 * 109.47085 * 57.46304 * 3 2 1 29 29 H 1.09002 * 110.70200 * 21.25743 * 4 2 1 30 30 H 1.08995 * 110.70207 * 144.31873 * 4 2 1 31 31 H 1.08995 * 111.10603 * 206.29427 * 5 4 2 32 32 H 1.09008 * 111.00130 * 82.38910 * 5 4 2 33 33 H 1.08997 * 110.37541 * 278.17953 * 6 5 4 34 34 H 1.09006 * 110.37598 * 155.94530 * 6 5 4 35 35 H 1.09004 * 109.46683 * 295.33181 * 8 7 2 36 36 H 1.09003 * 109.46750 * 55.33142 * 8 7 2 37 37 H 1.08007 * 119.87413 * 359.97438 * 10 9 8 38 38 H 1.07997 * 120.13149 * 180.28019 * 11 10 9 39 39 H 0.96999 * 119.99771 * 180.02562 * 16 15 13 40 40 H 1.08000 * 120.13187 * 179.97438 * 21 12 11 41 41 H 1.07991 * 119.88092 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0535 1.4376 0.0000 4 6 2.0550 -0.7498 -1.2425 5 6 2.3509 -2.1737 -0.6939 6 6 2.8586 -1.8556 0.7345 7 7 2.0317 -0.7166 1.1869 8 6 2.8030 0.1812 2.0569 9 6 3.2008 -0.5538 3.3109 10 6 2.3314 -0.5935 4.3901 11 6 2.6818 -1.2665 5.5382 12 6 3.9329 -1.9057 5.6184 13 6 4.3064 -2.5945 6.7955 14 1 3.5482 -3.0245 7.4331 15 6 5.6586 -2.7191 7.1340 16 7 6.5586 -2.0076 6.5052 17 14 6.1785 -3.9014 8.4835 18 1 5.7720 -5.2816 8.1161 19 1 7.6532 -3.8466 8.6486 20 1 5.5234 -3.5153 9.7591 21 6 4.8095 -1.8538 4.5191 22 6 4.4355 -1.1806 3.3786 23 1 -0.3633 0.4964 0.8999 24 1 -0.3634 0.5311 -0.8798 25 1 -0.3633 -1.0275 -0.0200 26 1 3.1426 1.4277 0.0457 27 1 1.7327 1.9412 -0.9118 28 1 1.6585 1.9681 0.8664 29 1 1.2924 -0.7876 -2.0205 30 1 2.9648 -0.2824 -1.6188 31 1 3.1240 -2.6681 -1.2821 32 1 1.4429 -2.7760 -0.6605 33 1 3.9112 -1.5738 0.7092 34 1 2.7120 -2.7146 1.3895 35 1 3.6981 0.5152 1.5321 36 1 2.1925 1.0450 2.3202 37 1 1.3738 -0.0978 4.3280 38 1 2.0012 -1.3001 6.3760 39 1 7.4958 -2.0943 6.7396 40 1 5.7723 -2.3405 4.5700 41 1 5.1065 -1.1397 2.5335 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343521977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:12 Heat of formation + Delta-G solvation = 13.822845 kcal Electronic energy + Delta-G solvation = -19458.326527 eV Core-core repulsion = 16723.134354 eV Total energy + Delta-G solvation = -2735.192173 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.65537 -37.35166 -33.95148 -32.23206 -32.14994 -29.46884 -29.14230 -27.37011 -26.08464 -24.96650 -23.25652 -21.36022 -20.59788 -19.78773 -18.36738 -17.22887 -15.69181 -15.53744 -15.23894 -14.56380 -14.22353 -13.82874 -13.46418 -13.24936 -12.95657 -12.63768 -12.40137 -12.17575 -12.02173 -11.85405 -11.59803 -11.49723 -11.33289 -11.11879 -10.91477 -10.73601 -10.70382 -10.51113 -10.39683 -10.34890 -10.27103 -9.48889 -9.29484 -9.11874 -7.84129 -7.38600 -7.18664 -6.66820 -4.31316 2.79807 3.08803 3.12069 3.13705 3.22163 3.97495 4.30618 4.67082 4.79127 4.87223 5.04252 5.33041 5.39414 5.51611 5.64374 5.70940 5.75619 5.81115 5.83896 5.88942 5.97937 6.00716 6.09138 6.11937 6.20100 6.32595 6.38100 6.43164 6.46501 6.48650 6.57603 6.99023 7.13783 7.30932 7.43457 7.51145 7.58835 7.68407 7.94802 8.11312 8.19931 8.36665 8.70039 8.95776 9.03350 10.27412 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.039851 B = 0.004436 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.452593 B = 6310.057647 C = 6490.855431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.089 3.911 3 C -0.163 4.163 4 C -0.132 4.132 5 C -0.131 4.131 6 C 0.052 3.948 7 N -0.514 5.514 8 C 0.114 3.886 9 C -0.203 4.203 10 C -0.072 4.072 11 C -0.224 4.224 12 C 0.111 3.889 13 C -0.465 4.465 14 H 0.075 0.925 15 C 0.074 3.926 16 N -0.803 5.803 17 Si 0.909 3.091 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.160 4.160 22 C -0.096 4.096 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.026 0.974 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.279 0.721 40 H 0.118 0.882 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.407 2.434 -11.796 13.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.000 4.000 3 C -0.221 4.221 4 C -0.171 4.171 5 C -0.169 4.169 6 C -0.075 4.075 7 N -0.238 5.238 8 C -0.012 4.012 9 C -0.205 4.205 10 C -0.091 4.091 11 C -0.244 4.244 12 C 0.109 3.891 13 C -0.495 4.495 14 H 0.093 0.907 15 C -0.142 4.142 16 N -0.429 5.429 17 Si 0.734 3.266 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.179 4.179 22 C -0.115 4.115 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.135 0.865 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.564 2.319 -11.493 12.978 hybrid contribution 1.090 -0.148 0.243 1.127 sum -4.474 2.171 -11.250 12.300 Atomic orbital electron populations 1.21719 0.93947 1.01735 1.00781 1.21757 0.95801 0.92645 0.89822 1.22366 1.01314 0.96546 1.01847 1.22914 1.00742 0.96014 0.97381 1.22764 1.01198 0.96454 0.96508 1.22930 0.95389 0.94961 0.94258 1.63747 1.36790 1.08716 1.14539 1.20973 0.94481 0.93998 0.91764 1.18940 0.96545 1.09725 0.95248 1.20315 0.96689 0.98726 0.93373 1.21012 0.99737 1.05857 0.97806 1.17619 0.90599 0.88746 0.92183 1.19548 0.92040 1.31268 1.06690 0.90689 1.25871 0.96535 0.94625 0.97160 1.69797 1.02710 1.32783 1.37651 0.86359 0.77735 0.81338 0.81181 1.18939 1.20423 1.19099 1.21312 1.01211 1.03264 0.92150 1.20532 0.94987 0.99014 0.97005 0.92518 0.93294 0.92484 0.92355 0.92783 0.91774 0.91304 0.91785 0.91386 0.91035 0.93811 0.90235 0.95565 0.91538 0.89549 0.89167 0.91038 0.86460 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 8.71 37.16 0.32 -1.18 16 2 C 0.09 1.18 1.16 -130.61 -0.15 1.03 16 3 C -0.16 -1.99 7.16 37.16 0.27 -1.73 16 4 C -0.13 -1.54 6.02 -24.75 -0.15 -1.69 16 5 C -0.13 -1.64 7.10 -24.44 -0.17 -1.82 16 6 C 0.05 0.83 5.58 -2.30 -0.01 0.82 16 7 N -0.51 -8.42 4.82 -217.17 -1.05 -9.47 16 8 C 0.11 2.05 3.82 -4.98 -0.02 2.03 16 9 C -0.20 -4.44 4.93 -104.33 -0.51 -4.95 16 10 C -0.07 -1.65 9.68 -39.66 -0.38 -2.04 16 11 C -0.22 -5.63 9.80 -38.87 -0.38 -6.02 16 12 C 0.11 3.00 5.56 -106.82 -0.59 2.41 16 13 C -0.47 -12.57 9.06 -37.74 -0.34 -12.92 16 14 H 0.07 1.95 7.87 -52.49 -0.41 1.54 16 15 C 0.07 1.90 5.23 -17.34 -0.09 1.81 16 16 N -0.80 -21.13 10.85 55.55 0.60 -20.52 16 17 Si 0.91 19.02 29.58 -169.99 -5.03 14.00 16 18 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 C -0.16 -4.19 8.67 -38.88 -0.34 -4.53 16 22 C -0.10 -2.25 8.78 -39.66 -0.35 -2.60 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.75 6.63 -51.93 -0.34 0.40 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.81 6.68 -51.93 -0.35 0.46 16 29 H 0.07 0.70 7.83 -51.93 -0.41 0.30 16 30 H 0.06 0.73 7.85 -51.93 -0.41 0.32 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 33 H 0.04 0.73 6.88 -51.93 -0.36 0.37 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.03 0.46 6.48 -51.93 -0.34 0.13 16 36 H 0.07 1.15 6.46 -51.93 -0.34 0.81 16 37 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 38 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 40 H 0.12 3.19 6.20 -52.49 -0.33 2.87 16 41 H 0.08 1.74 7.52 -52.49 -0.39 1.34 16 LS Contribution 319.63 15.07 4.82 4.82 Total: -1.00 -27.26 319.63 -10.17 -37.42 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.61 Total: 5.12 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: -2.91 Total: -31.37 kcal Atomic # 7 Polarization: -29.55 SS G_CDS: -0.44 Total: -29.99 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.26 -10.17 -37.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343521977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.247 kcal (2) G-P(sol) polarization free energy of solvation -27.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds