Wall clock time and date at job start Mon Mar 30 2020 06:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 110.00802 * 2 1 4 4 C 1.54323 * 109.88551 * 238.88880 * 2 1 3 5 5 C 1.55431 * 103.04591 * 262.87621 * 4 2 1 6 6 C 1.54901 * 101.52119 * 324.36788 * 5 4 2 7 7 N 1.47442 * 109.88925 * 121.12043 * 2 1 3 8 8 C 1.46901 * 111.00030 * 242.66085 * 7 2 1 9 9 C 1.50692 * 109.47100 * 175.33097 * 8 7 2 10 10 C 1.38634 * 119.75047 * 273.58681 * 9 8 7 11 11 C 1.37617 * 120.25164 * 179.72512 * 10 9 8 12 12 C 1.40721 * 119.73940 * 0.56709 * 11 10 9 13 13 C 1.41401 * 120.24035 * 179.68343 * 12 11 10 14 14 H 1.07998 * 119.99771 * 27.86284 * 13 12 11 15 15 C 1.39948 * 119.99888 * 207.86185 * 13 12 11 16 16 N 1.30825 * 119.99878 * 12.13607 * 15 13 12 17 17 Si 1.86795 * 119.99997 * 192.13909 * 15 13 12 18 18 H 1.48497 * 109.47428 * 59.99798 * 17 15 13 19 19 H 1.48498 * 109.47039 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46862 * 299.99429 * 17 15 13 21 21 C 1.40707 * 119.51383 * 359.71065 * 12 11 10 22 22 C 1.37618 * 119.74784 * 359.97438 * 21 12 11 23 23 H 1.09005 * 109.47036 * 298.87998 * 1 2 3 24 24 H 1.09001 * 109.47398 * 58.88047 * 1 2 3 25 25 H 1.09002 * 109.47031 * 178.88340 * 1 2 3 26 26 H 1.09005 * 109.46985 * 177.45161 * 3 2 1 27 27 H 1.08994 * 109.47747 * 297.45502 * 3 2 1 28 28 H 1.09000 * 109.47085 * 57.46304 * 3 2 1 29 29 H 1.09002 * 110.70200 * 21.25743 * 4 2 1 30 30 H 1.08995 * 110.70207 * 144.31873 * 4 2 1 31 31 H 1.08995 * 111.10603 * 206.29427 * 5 4 2 32 32 H 1.09008 * 111.00130 * 82.38910 * 5 4 2 33 33 H 1.08997 * 110.37541 * 278.17953 * 6 5 4 34 34 H 1.09006 * 110.37598 * 155.94530 * 6 5 4 35 35 H 1.09004 * 109.46683 * 295.33181 * 8 7 2 36 36 H 1.09003 * 109.46750 * 55.33142 * 8 7 2 37 37 H 1.08007 * 119.87413 * 359.97438 * 10 9 8 38 38 H 1.07997 * 120.13149 * 180.28019 * 11 10 9 39 39 H 0.96999 * 119.99771 * 180.02562 * 16 15 13 40 40 H 1.08000 * 120.13187 * 179.97438 * 21 12 11 41 41 H 1.07991 * 119.88092 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0535 1.4376 0.0000 4 6 2.0550 -0.7498 -1.2425 5 6 2.3509 -2.1737 -0.6939 6 6 2.8586 -1.8556 0.7345 7 7 2.0317 -0.7166 1.1869 8 6 2.8030 0.1812 2.0569 9 6 3.2008 -0.5538 3.3109 10 6 2.3314 -0.5935 4.3901 11 6 2.6818 -1.2665 5.5382 12 6 3.9329 -1.9057 5.6184 13 6 4.3064 -2.5945 6.7955 14 1 3.5482 -3.0245 7.4331 15 6 5.6586 -2.7191 7.1340 16 7 6.5586 -2.0076 6.5052 17 14 6.1785 -3.9014 8.4835 18 1 5.7720 -5.2816 8.1161 19 1 7.6532 -3.8466 8.6486 20 1 5.5234 -3.5153 9.7591 21 6 4.8095 -1.8538 4.5191 22 6 4.4355 -1.1806 3.3786 23 1 -0.3633 0.4964 0.8999 24 1 -0.3634 0.5311 -0.8798 25 1 -0.3633 -1.0275 -0.0200 26 1 3.1426 1.4277 0.0457 27 1 1.7327 1.9412 -0.9118 28 1 1.6585 1.9681 0.8664 29 1 1.2924 -0.7876 -2.0205 30 1 2.9648 -0.2824 -1.6188 31 1 3.1240 -2.6681 -1.2821 32 1 1.4429 -2.7760 -0.6605 33 1 3.9112 -1.5738 0.7092 34 1 2.7120 -2.7146 1.3895 35 1 3.6981 0.5152 1.5321 36 1 2.1925 1.0450 2.3202 37 1 1.3738 -0.0978 4.3280 38 1 2.0012 -1.3001 6.3760 39 1 7.4958 -2.0943 6.7396 40 1 5.7723 -2.3405 4.5700 41 1 5.1065 -1.1397 2.5335 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343521977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:12 Heat of formation + Delta-G solvation = 0.089278 kcal Electronic energy + Delta-G solvation = -19458.922059 eV Core-core repulsion = 16723.134354 eV Total energy + Delta-G solvation = -2735.787705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.87409 -39.16575 -35.77694 -33.71262 -33.25202 -31.26726 -30.97169 -28.39729 -27.73262 -26.07895 -24.86077 -23.01928 -22.15773 -21.42784 -19.51231 -19.19271 -17.18138 -16.87906 -16.67699 -15.88739 -15.85078 -15.51595 -15.04561 -14.45021 -14.24188 -14.09329 -13.79957 -13.73789 -13.48660 -13.25517 -13.14083 -12.79361 -12.72433 -12.49239 -12.35086 -12.22229 -12.09468 -11.93711 -11.78618 -11.47531 -11.40032 -11.30567 -11.18782 -11.00508 -9.34743 -9.19756 -9.02532 -8.58081 -6.33590 0.96464 1.17076 1.37404 1.48966 1.52395 2.21856 2.72125 3.18461 3.68309 3.79481 3.84745 4.03888 4.28359 4.30724 4.32612 4.41302 4.52733 4.59563 4.64802 4.69406 4.77753 4.78844 4.93538 4.97500 5.01391 5.05163 5.11493 5.13733 5.17695 5.23131 5.25991 5.36075 5.39261 5.49216 5.57131 5.73501 5.97448 6.12227 6.16444 6.33922 6.39470 6.42472 6.72519 6.96785 7.05854 8.38330 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.039851 B = 0.004436 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.452593 B = 6310.057647 C = 6490.855431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.083 3.917 3 C -0.160 4.160 4 C -0.125 4.125 5 C -0.124 4.124 6 C 0.048 3.952 7 N -0.527 5.527 8 C 0.123 3.877 9 C -0.190 4.190 10 C -0.076 4.076 11 C -0.240 4.240 12 C 0.078 3.922 13 C -0.505 4.505 14 H 0.072 0.928 15 C 0.033 3.967 16 N -0.835 5.835 17 Si 0.983 3.017 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.260 1.260 21 C -0.183 4.183 22 C -0.097 4.097 23 H 0.046 0.954 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.051 0.949 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.286 0.714 40 H 0.099 0.901 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.185 2.987 -13.527 15.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.006 4.006 3 C -0.218 4.218 4 C -0.164 4.164 5 C -0.162 4.162 6 C -0.079 4.079 7 N -0.252 5.252 8 C -0.004 4.004 9 C -0.191 4.191 10 C -0.095 4.095 11 C -0.260 4.260 12 C 0.075 3.925 13 C -0.535 4.535 14 H 0.090 0.910 15 C -0.180 4.180 16 N -0.462 5.462 17 Si 0.804 3.196 18 H -0.185 1.185 19 H -0.192 1.192 20 H -0.185 1.185 21 C -0.202 4.202 22 C -0.116 4.116 23 H 0.065 0.935 24 H 0.093 0.907 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.096 0.904 37 H 0.129 0.871 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.358 2.884 -13.243 14.971 hybrid contribution 1.248 -0.242 0.654 1.430 sum -5.111 2.642 -12.589 13.841 Atomic orbital electron populations 1.21705 0.92964 1.01657 1.01542 1.21935 0.96465 0.93114 0.89065 1.22333 1.00709 0.95894 1.02888 1.22906 1.01675 0.94701 0.97074 1.22730 1.01665 0.97499 0.94261 1.22886 0.95017 0.93989 0.96058 1.63638 1.36273 1.08909 1.16373 1.20865 0.95242 0.93930 0.90344 1.19392 0.95347 1.07802 0.96604 1.20610 0.97828 0.98209 0.92845 1.21209 0.99408 1.06362 0.98979 1.17955 0.91753 0.89937 0.92806 1.19798 0.93191 1.33107 1.07423 0.90978 1.26728 0.95925 0.95843 0.99541 1.69863 1.03231 1.33929 1.39201 0.85238 0.77769 0.78670 0.77903 1.18545 1.19151 1.18464 1.21268 1.00806 1.04830 0.93329 1.20723 0.95962 0.98391 0.96523 0.93532 0.90716 0.93066 0.93145 0.90396 0.92310 0.89018 0.91184 0.89848 0.90709 0.94805 0.93077 0.95028 0.90428 0.87121 0.88783 0.90387 0.88295 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 8.71 71.98 0.63 -1.93 16 2 C 0.08 1.95 1.16 3.87 0.00 1.96 16 3 C -0.16 -3.41 7.16 71.98 0.52 -2.90 16 4 C -0.13 -2.48 6.02 31.88 0.19 -2.29 16 5 C -0.12 -2.81 7.10 32.08 0.23 -2.58 16 6 C 0.05 1.50 5.58 86.77 0.48 1.98 16 7 N -0.53 -16.42 4.82 -841.00 -4.06 -20.48 16 8 C 0.12 4.23 3.82 85.55 0.33 4.56 16 9 C -0.19 -8.25 4.93 -19.68 -0.10 -8.35 16 10 C -0.08 -3.49 9.68 22.22 0.22 -3.27 16 11 C -0.24 -12.37 9.80 22.73 0.22 -12.14 16 12 C 0.08 4.38 5.56 -21.29 -0.12 4.26 16 13 C -0.50 -28.44 9.06 23.46 0.21 -28.22 16 14 H 0.07 3.92 7.87 -2.91 -0.02 3.90 16 15 C 0.03 1.72 5.23 85.26 0.45 2.17 16 16 N -0.84 -45.32 10.85 21.83 0.24 -45.09 16 17 Si 0.98 39.63 29.58 68.60 2.03 41.66 16 18 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 19 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 20 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 21 C -0.18 -9.98 8.67 22.73 0.20 -9.79 16 22 C -0.10 -4.61 8.78 22.22 0.20 -4.42 16 23 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.15 6.63 -2.38 -0.02 1.14 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.31 6.68 -2.39 -0.02 1.29 16 29 H 0.09 1.44 7.83 -2.39 -0.02 1.42 16 30 H 0.07 1.33 7.85 -2.39 -0.02 1.31 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.03 1.10 6.88 -2.39 -0.02 1.08 16 34 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.03 1.06 6.48 -2.39 -0.02 1.05 16 36 H 0.08 2.51 6.46 -2.39 -0.02 2.49 16 37 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.09 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.29 14.06 8.30 -92.71 -0.77 13.29 16 40 H 0.10 5.68 6.20 -2.91 -0.02 5.66 16 41 H 0.10 4.20 7.52 -2.92 -0.02 4.18 16 Total: -1.00 -60.58 319.63 2.85 -57.73 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.99 Total: 27.14 kcal Atomic # 6 Polarization: -64.61 SS G_CDS: 3.65 Total: -60.96 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -3.82 Total: -65.57 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -60.58 2.85 -57.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343521977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.820 kcal (2) G-P(sol) polarization free energy of solvation -60.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds